2JHWA

Crystal structure of rhogdi e155a, e157a mutant
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
138
structure length
138
Chain Sequence
AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEAYAFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Protein Crystallization by Surface Entropy Reduction: Optimization of the Ser Strategy
pubmed doi rcsb
molecule tags Inhibitor
source organism Homo sapiens
molecule keywords RHO GDP-DISSOCIATION INHIBITOR 1
total genus 26
structure length 138
sequence length 138
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-02-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.50.30 Mainly Beta Distorted Sandwich Coagulation Factor XIII; Chain A, domain 1 Coagulation Factor XIII, subunit A, domain 1 2jhwA00
2JHTA 1DS6B 2JHXA 2JI0A 1FSOA 1RHOA 2JHUA 2JHVA 2JHSA 1QVYA 2BXWA 1AJWA 4F38B 1FSTA 1KMTA 2JHYA 1DOAB 1FT3A 1FT0A 2JHZA 1GDFA 2JHWA 1HH4D
chains in the Genus database with same CATH superfamily
2JHXA 4JV6B 1FSOA 3EJAA 2JHVA 4GOJC 5L7KA 2JHSA 4RE1A 4JHPB 4ALEA 4QI8A 5IJUA 2JHYA 2YOWA 2YETA 1FT0A 4OY6A 4MAHA 2LHSA 5ACJA 5EMVA 1KSHB 5FOHA 4GBOA 1HH4D 1DS6B 5TB5B 5EMWA 4ALQA 4A02A 1RHOA 4EISA 4OY8A 2YOXA 1KSGB 2XWXA 4JV8B 2BXWA 1AJWA 4F38B 3ZUDA 4OY7A 4EIRA 2VTCA 3UAMA 4B5QA 1FT3A 5ACIA 2BENA 5ACFA 3EIIA 4GOKC 3RBQA 3T5IA 5FTZA 5ACHA 4D7UA 5E80A 2JHWA 5DQEA 4ALRA 2JHTA 3T5GB 2JI0A 5FJQA 4FMRA 5TARB 3GQQA 3JUAA 5DQ8A 2YOYA 1QVYA 4JVFB 4MAIA 4EISB 4ALCA 4ALSA 3KYSA 1GDFA 3L15A 2JHUA 4JVBB 4D7VA 4ALTA 2R5OA 1FSTA 1KSJB 1KMTA 5HGUA 4LN0A 5AA7A 5F2UA 5HNOA 1DOAB 5ACGA 5HNPA 5E8FA 2JHZA 2BEMA
chains in the Genus database with same CATH topology
2JHTA 1DS6B 2JHXA 2JI0A 1FSOA 1RHOA 2JHUA 2JHVA 2JHSA 1QVYA 2BXWA 1AJWA 4F38B 1FSTA 1KMTA 2JHYA 1DOAB 1FT3A 1FT0A 2JHZA 1GDFA 2JHWA 1HH4D
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JHT A;  1DS6 B;  2JHX A;  2JI0 A;  1FSO A;  1RHO A;  2JHU A;  2JHV A;  2JHS A;  1QVY A;  2BXW A;  1AJW A;  4F38 B;  1FST A;  1KMT A;  2JHY A;  1DOA B;  1FT3 A;  1FT0 A;  2JHZ A;  1GDF A;  2JHW A;  1HH4 D; 
#chains in the Genus database with same CATH topology
 2JHX A;  4JV6 B;  1FSO A;  3EJA A;  2JHV A;  4GOJ C;  5L7K A;  2JHS A;  4RE1 A;  4JHP B;  4ALE A;  4QI8 A;  5IJU A;  2JHY A;  2YOW A;  2YET A;  1FT0 A;  4OY6 A;  4MAH A;  2LHS A;  5ACJ A;  5EMV A;  1KSH B;  5FOH A;  4GBO A;  1HH4 D;  1DS6 B;  5TB5 B;  5EMW A;  4ALQ A;  4A02 A;  1RHO A;  4EIS A;  4OY8 A;  2YOX A;  1KSG B;  2XWX A;  4JV8 B;  2BXW A;  1AJW A;  4F38 B;  3ZUD A;  4OY7 A;  4EIR A;  2VTC A;  3UAM A;  4B5Q A;  1FT3 A;  5ACI A;  2BEN A;  5ACF A;  3EII A;  4GOK C;  3RBQ A;  3T5I A;  5FTZ A;  5ACH A;  4D7U A;  5E80 A;  2JHW A;  5DQE A;  4ALR A;  2JHT A;  3T5G B;  2JI0 A;  5FJQ A;  4FMR A;  5TAR B;  3GQQ A;  3JUA A;  5DQ8 A;  2YOY A;  1QVY A;  4JVF B;  4MAI A;  4EIS B;  4ALC A;  4ALS A;  3KYS A;  1GDF A;  3L15 A;  2JHU A;  4JVB B;  4D7V A;  4ALT A;  2R5O A;  1FST A;  1KSJ B;  1KMT A;  5HGU A;  4LN0 A;  5AA7 A;  5F2U A;  5HNO A;  1DOA B;  5ACG A;  5HNP A;  5E8F A;  2JHZ A;  2BEM A; 
#chains in the Genus database with same CATH homology
 2JHT A;  1DS6 B;  2JHX A;  2JI0 A;  1FSO A;  1RHO A;  2JHU A;  2JHV A;  2JHS A;  1QVY A;  2BXW A;  1AJW A;  4F38 B;  1FST A;  1KMT A;  2JHY A;  1DOA B;  1FT3 A;  1FT0 A;  2JHZ A;  1GDF A;  2JHW A;  1HH4 D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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