2JHWA

Crystal structure of rhogdi e155a, e157a mutant
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
138
structure length
138
Chain Sequence
AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEAYAFLTPVEEAPKGMLARGSYSIKSRFTDDDKTDHLSWEWNLTIKKDW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Inhibitor
source organism Homo sapiens
publication title Protein Crystallization by Surface Entropy Reduction: Optimization of the Ser Strategy
pubmed doi rcsb
molecule keywords RHO GDP-DISSOCIATION INHIBITOR 1
total genus 26
structure length 138
sequence length 138
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-02-23
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.70.50.30 Mainly Beta Distorted Sandwich Coagulation Factor XIII; Chain A, domain 1 Coagulation Factor XIII, subunit A, domain 1 2jhwA00
1FSOA 1RHOA 1FT0A 2JHWA 2JHZA 1AJWA 2JHTA 2JHYA 1DS6B 2JHXA 1QVYA 2JI0A 2BXWA 2JHVA 1KMTA 1HH4D 1FT3A 1FSTA 2JHUA 4F38B 2JHSA 1GDFA 1DOAB
chains in the Genus database with same CATH superfamily
2R5OA 5FJQA 3GQQA 4EISB 4ALRA 5ACHA 3L15A 4RE1A 2JHYA 3RBQA 1DS6B 3T5GB 4OY7A 2YOYA 4GOKC 3EIIA 1KSHB 3KYSA 2BXWA 2JHVA 1KMTA 3JUAA 5ACGA 3T5IA 2JHUA 1GDFA 5TARB 4ALEA 2VTCA 2JHTA 3ZUDA 1KSGB 4GBOA 4QI8A 5HNPA 4ALTA 5ACIA 4A02A 5DQ8A 4D7UA 3UAMA 5F2UA 4MAIA 4ALQA 1FT3A 5E80A 4B5QA 1FSTA 5HGUA 2XWXA 1DOAB 4D7VA 1FSOA 1RHOA 5AA7A 5ACFA 4ALSA 5DQEA 4JVFB 5EMVA 4OY6A 4JHPB 2YETA 5E8FA 1QVYA 5HNOA 1KSJB 1HH4D 4OY8A 2BENA 3EJAA 4F38B 4JVBB 2LHSA 5FOHA 5ACJA 5FTZA 4ALCA 4MAHA 2BEMA 4EISA 4GOJC 5IJUA 1FT0A 2JHWA 2JHZA 4JV6B 4JV8B 1AJWA 4LN0A 4EIRA 5L7KA 2JHXA 2JI0A 2YOXA 2YOWA 2JHSA 5EMWA 5TB5B 4FMRA
chains in the Genus database with same CATH topology
1FSOA 1RHOA 1FT0A 2JHWA 2JHZA 1AJWA 2JHTA 2JHYA 1DS6B 2JHXA 1QVYA 2JI0A 2BXWA 2JHVA 1KMTA 1HH4D 1FT3A 1FSTA 2JHUA 4F38B 2JHSA 1GDFA 1DOAB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FSO A;  1RHO A;  1FT0 A;  2JHW A;  2JHZ A;  1AJW A;  2JHT A;  2JHY A;  1DS6 B;  2JHX A;  1QVY A;  2JI0 A;  2BXW A;  2JHV A;  1KMT A;  1HH4 D;  1FT3 A;  1FST A;  2JHU A;  4F38 B;  2JHS A;  1GDF A;  1DOA B; 
#chains in the Genus database with same CATH topology
 2R5O A;  5FJQ A;  3GQQ A;  4EIS B;  4ALR A;  5ACH A;  3L15 A;  4RE1 A;  2JHY A;  3RBQ A;  1DS6 B;  3T5G B;  4OY7 A;  2YOY A;  4GOK C;  3EII A;  1KSH B;  3KYS A;  2BXW A;  2JHV A;  1KMT A;  3JUA A;  5ACG A;  3T5I A;  2JHU A;  1GDF A;  5TAR B;  4ALE A;  2VTC A;  2JHT A;  3ZUD A;  1KSG B;  4GBO A;  4QI8 A;  5HNP A;  4ALT A;  5ACI A;  4A02 A;  5DQ8 A;  4D7U A;  3UAM A;  5F2U A;  4MAI A;  4ALQ A;  1FT3 A;  5E80 A;  4B5Q A;  1FST A;  5HGU A;  2XWX A;  1DOA B;  4D7V A;  1FSO A;  1RHO A;  5AA7 A;  5ACF A;  4ALS A;  5DQE A;  4JVF B;  5EMV A;  4OY6 A;  4JHP B;  2YET A;  5E8F A;  1QVY A;  5HNO A;  1KSJ B;  1HH4 D;  4OY8 A;  2BEN A;  3EJA A;  4F38 B;  4JVB B;  2LHS A;  5FOH A;  5ACJ A;  5FTZ A;  4ALC A;  4MAH A;  2BEM A;  4EIS A;  4GOJ C;  5IJU A;  1FT0 A;  2JHW A;  2JHZ A;  4JV6 B;  4JV8 B;  1AJW A;  4LN0 A;  4EIR A;  5L7K A;  2JHX A;  2JI0 A;  2YOX A;  2YOW A;  2JHS A;  5EMW A;  5TB5 B;  4FMR A; 
#chains in the Genus database with same CATH homology
 1FSO A;  1RHO A;  1FT0 A;  2JHW A;  2JHZ A;  1AJW A;  2JHT A;  2JHY A;  1DS6 B;  2JHX A;  1QVY A;  2JI0 A;  2BXW A;  2JHV A;  1KMT A;  1HH4 D;  1FT3 A;  1FST A;  2JHU A;  4F38 B;  2JHS A;  1GDF A;  1DOA B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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