2JZ4A

Putative 32 kda myrosinase binding protein at3g16450.1 from arabidopsis thaliana
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
299
structure length
299
Chain Sequence
AQKVEAGGGAGGASWDDGVHDGVRKVHVGQGQDGVSSINVVYAKDSQDVEGGEHGKKTLLGFETFEVDADDYIVAVQVTYDNVFGQDSDIITSITFNTFKGKTSPPYGLETQKKFVLKDKNGGKLVGFHGRAGEALYALGAYFATTTTPVTPAKKLSAIGGDEGTAWDDGAYDGVKKVYVGQGQDGISAVKFEYNKGAENIVGGEHGKPTLLGFEEFEIDYPSEYITAVEGTYDKIFGSDGLIITMLRFKTNKQTSAPFGLEAGTAFELKEEGHKIVGFHGKASELLHQFGVHVMPLTN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
source organism Arabidopsis thaliana
publication title Structure of the putative 32 kDa myrosinase-binding protein from Arabidopsis (At3g16450.1) determined by SAIL-NMR.
pubmed doi rcsb
molecule keywords Jasmonate inducible protein isolog
total genus 30
structure length 299
sequence length 299
ec nomenclature
pdb deposition date 2007-12-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 2jz4A01
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 2jz4A02
1JOTA 4WOGA 1UGYA 4PITA 1UGWC 2GTYA 4R6OA 3VZFA 2GUCA 1J4SA 3AQGA 2HYRA 4GX7A 1WS5A 1ZGSA 3WOBA 1UH0A 1UGYC 4MQ0A 2BN0A 1M26A 1WS4A 3R50A 1PXDA 1XEZA 3VY7A 1X1VA 3LL1A 5AV7A 1KU8A 1XXRA 3VZGA 1WS5C 3VY6A 1OUWA 3P8SA 1ZGRA 5JM1A 1C3MA 1UGXA 2GUEA 5BN6E 1UH1A 3LLYA 4R6NA 1WS4C 1TOQA 1VBPA 3MIUA 3MIVA 5J51A 4R6QA 1C3KA 1JACA 3R52A 4AKCA 3LLZA 4R6PA 4PIKA 1UGWA 2BMZA 5J4XA 3O44A 3WOCA 4DDNA 4AKDA 3APAA 1J4TA 4AK4A 1VBOA 3R51A 1TP8A 1KUJA 2JZ4A 5EXGA 4R6RA 3LL0A 2GUXA 4PIFA 3LL2A 2BMYA 5J4TA 2GUDA 4PIUA 3MITA 1XXQA 2HYQA 2NUOA 1C3NA 1J4UA 3VZEA 2NU5A 4AKBA 5J50A 3LKYA 3LM1A
chains in the Genus database with same CATH superfamily
1JOTA 4WOGA 4ARYA 1UGYA 4PITA 1UGWC 2GTYA 4R6OA 3VZFA 2GUCA 1J4SA 3AQGA 2HYRA 4GX7A 4QX3A 4QX2A 1WS5A 1ZGSA 3WOBA 1UH0A 1UGYC 4MQ0A 2BN0A 1M26A 1WS4A 3R50A 1PXDA 1XEZA 3VY7A 1X1VA 3LL1A 5AV7A 1KU8A 1XXRA 3VZGA 4QX1A 4ARXA 1WS5C 3VY6A 1OUWA 3P8SA 1ZGRA 5JM1A 1C3MA 1UGXA 2GUEA 4D8MA 1UH1A 5BN6E 3LLYA 1VMOA 4R6NA 1WS4C 1TOQA 1VBPA 3MIUA 3MIVA 5J51A 4R6QA 1C3KA 1JACA 3R52A 4AKCA 4MOAA 3LLZA 1DLCA 2C9KA 4R6PA 4PIKA 1UGWA 2BMZA 5J4XA 3O44A 3TOWA 2QP2A 3WOCA 4DDNA 4AKDA 3APAA 1J4TA 4AK4A 1VBOA 3R51A 1TP8A 1KUJA 1CIYA 2JZ4A 5EXGA 3LL0A 1W99A 2GUXA 4PIFA 3LL2A 4R6RA 4W8JA 2BMYA 5J4TA 2GUDA 4PIUA 1JI6A 3EB7A 3MITA 4QX0A 1XXQA 2HYQA 2NUOA 1C3NA 1I5PA 1J4UA 3VZEA 2NU5A 4AKBA 5J50A 3LKYA 3LM1A
chains in the Genus database with same CATH topology
1JOTA 4WOGA 1UGYA 4PITA 1UGWC 2GTYA 4R6OA 3VZFA 2GUCA 1J4SA 3AQGA 2HYRA 4GX7A 1WS5A 1ZGSA 3WOBA 1UH0A 1UGYC 4MQ0A 2BN0A 1M26A 1WS4A 3R50A 1PXDA 1XEZA 3VY7A 1X1VA 3LL1A 5AV7A 1KU8A 1XXRA 3VZGA 1WS5C 3VY6A 1OUWA 3P8SA 1ZGRA 5JM1A 1C3MA 1UGXA 2GUEA 5BN6E 1UH1A 3LLYA 4R6NA 1WS4C 1TOQA 1VBPA 3MIUA 3MIVA 5J51A 4R6QA 1C3KA 1JACA 3R52A 4AKCA 3LLZA 4R6PA 4PIKA 1UGWA 2BMZA 5J4XA 3O44A 3WOCA 4DDNA 4AKDA 3APAA 1J4TA 4AK4A 1VBOA 3R51A 1TP8A 1KUJA 2JZ4A 5EXGA 4R6RA 3LL0A 2GUXA 4PIFA 3LL2A 2BMYA 5J4TA 2GUDA 4PIUA 3MITA 1XXQA 2HYQA 2NUOA 1C3NA 1J4UA 3VZEA 2NU5A 4AKBA 5J50A 3LKYA 3LM1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JOT A;  4WOG A;  1UGY A;  4PIT A;  1UGW C;  2GTY A;  4R6O A;  3VZF A;  2GUC A;  1J4S A;  3AQG A;  2HYR A;  4GX7 A;  1WS5 A;  1ZGS A;  3WOB A;  1UH0 A;  1UGY C;  4MQ0 A;  2BN0 A;  1M26 A;  1WS4 A;  3R50 A;  1PXD A;  1XEZ A;  3VY7 A;  1X1V A;  3LL1 A;  5AV7 A;  1KU8 A;  1XXR A;  3VZG A;  1WS5 C;  3VY6 A;  1OUW A;  3P8S A;  1ZGR A;  5JM1 A;  1C3M A;  1UGX A;  2GUE A;  5BN6 E;  1UH1 A;  3LLY A;  4R6N A;  1WS4 C;  1TOQ A;  1VBP A;  3MIU A;  3MIV A;  5J51 A;  4R6Q A;  1C3K A;  1JAC A;  3R52 A;  4AKC A;  3LLZ A;  4R6P A;  4PIK A;  1UGW A;  2BMZ A;  5J4X A;  3O44 A;  3WOC A;  4DDN A;  4AKD A;  3APA A;  1J4T A;  4AK4 A;  1VBO A;  3R51 A;  1TP8 A;  1KUJ A;  2JZ4 A;  5EXG A;  4R6R A;  3LL0 A;  2GUX A;  4PIF A;  3LL2 A;  2BMY A;  5J4T A;  2GUD A;  4PIU A;  3MIT A;  1XXQ A;  2HYQ A;  2NUO A;  1C3N A;  1J4U A;  3VZE A;  2NU5 A;  4AKB A;  5J50 A;  3LKY A;  3LM1 A; 
#chains in the Genus database with same CATH topology
 1JOT A;  4WOG A;  4ARY A;  1UGY A;  4PIT A;  1UGW C;  2GTY A;  4R6O A;  3VZF A;  2GUC A;  1J4S A;  3AQG A;  2HYR A;  4GX7 A;  4QX3 A;  4QX2 A;  1WS5 A;  1ZGS A;  3WOB A;  1UH0 A;  1UGY C;  4MQ0 A;  2BN0 A;  1M26 A;  1WS4 A;  3R50 A;  1PXD A;  1XEZ A;  3VY7 A;  1X1V A;  3LL1 A;  5AV7 A;  1KU8 A;  1XXR A;  3VZG A;  4QX1 A;  4ARX A;  1WS5 C;  3VY6 A;  1OUW A;  3P8S A;  1ZGR A;  5JM1 A;  1C3M A;  1UGX A;  2GUE A;  4D8M A;  1UH1 A;  5BN6 E;  3LLY A;  1VMO A;  4R6N A;  1WS4 C;  1TOQ A;  1VBP A;  3MIU A;  3MIV A;  5J51 A;  4R6Q A;  1C3K A;  1JAC A;  3R52 A;  4AKC A;  4MOA A;  3LLZ A;  1DLC A;  2C9K A;  4R6P A;  4PIK A;  1UGW A;  2BMZ A;  5J4X A;  3O44 A;  3TOW A;  2QP2 A;  3WOC A;  4DDN A;  4AKD A;  3APA A;  1J4T A;  4AK4 A;  1VBO A;  3R51 A;  1TP8 A;  1KUJ A;  1CIY A;  2JZ4 A;  5EXG A;  3LL0 A;  1W99 A;  2GUX A;  4PIF A;  3LL2 A;  4R6R A;  4W8J A;  2BMY A;  5J4T A;  2GUD A;  4PIU A;  1JI6 A;  3EB7 A;  3MIT A;  4QX0 A;  1XXQ A;  2HYQ A;  2NUO A;  1C3N A;  1I5P A;  1J4U A;  3VZE A;  2NU5 A;  4AKB A;  5J50 A;  3LKY A;  3LM1 A; 
#chains in the Genus database with same CATH homology
 1JOT A;  4WOG A;  1UGY A;  4PIT A;  1UGW C;  2GTY A;  4R6O A;  3VZF A;  2GUC A;  1J4S A;  3AQG A;  2HYR A;  4GX7 A;  1WS5 A;  1ZGS A;  3WOB A;  1UH0 A;  1UGY C;  4MQ0 A;  2BN0 A;  1M26 A;  1WS4 A;  3R50 A;  1PXD A;  1XEZ A;  3VY7 A;  1X1V A;  3LL1 A;  5AV7 A;  1KU8 A;  1XXR A;  3VZG A;  1WS5 C;  3VY6 A;  1OUW A;  3P8S A;  1ZGR A;  5JM1 A;  1C3M A;  1UGX A;  2GUE A;  5BN6 E;  1UH1 A;  3LLY A;  4R6N A;  1WS4 C;  1TOQ A;  1VBP A;  3MIU A;  3MIV A;  5J51 A;  4R6Q A;  1C3K A;  1JAC A;  3R52 A;  4AKC A;  3LLZ A;  4R6P A;  4PIK A;  1UGW A;  2BMZ A;  5J4X A;  3O44 A;  3WOC A;  4DDN A;  4AKD A;  3APA A;  1J4T A;  4AK4 A;  1VBO A;  3R51 A;  1TP8 A;  1KUJ A;  2JZ4 A;  5EXG A;  4R6R A;  3LL0 A;  2GUX A;  4PIF A;  3LL2 A;  2BMY A;  5J4T A;  2GUD A;  4PIU A;  3MIT A;  1XXQ A;  2HYQ A;  2NUO A;  1C3N A;  1J4U A;  3VZE A;  2NU5 A;  4AKB A;  5J50 A;  3LKY A;  3LM1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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