2MHG | Genus

Total Genus 13

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	13
sequence length	75
structure length	75
Chain Sequence	GADDDAPSGEPDVTIRQEGDKTIQEYRVNGFLYAIKVVPKHGKPYFLVRADGSDGNFIRSDQPDKLIPQWEIFSW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 75 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural genomics, unknown function
source organism	Pseudomonas aeruginosa pao1
publication title	NMR structure of protein NP_254181.1 from Pseudomonas aeruginosa PA01 rcsb
molecule keywords	Uncharacterized protein
total genus	13
structure length	75
sequence length	75
chains with identical sequence	B
ec nomenclature
pdb deposition date	2013-11-22

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.20.130.30	Mainly Beta	Single Sheet	S-adenosyl-L-methionine-dependent methyltransferases	S-adenosyl-L-methionine-dependent methyltransferases	2mhgA00

2MHGA
chains in the Genus database with same CATH superfamily

1JVGA 2PN5A 3T4AB 3OHXB 3PX2A 5FO9B 2MHGA 2R6ZA 3HS0B 2QKIB 2A74B 2XWJB 5JTWA 2PKWA 5FO7B 2OYRA 5FOBB 4D94A 2XWBB 2PGXA 2WINB 4OQDA 2WIIB 5FO8B 4LNVA 3G6JB 3PFGA 3CU7A 4OQEA 5JPMA 5JPMB 4FXKA 4FXGA 3L3OB 4FXKB 3BXOA 4FXGB 3HRZB 2B39A 3PFHA 1JV3A 1JV1A 3PX3A 3FRPG 1NT2B 1JVDA 3KLSA 5JPNA 2I07B 1VM8A 5JPNB 2A73B 2ICEB
chains in the Genus database with same CATH topology

1JVGA 2PN5A 3T4AB 3OHXB 5FO9B 2MHGA 3HS0B 3D2LA 2QKIB 2A74B 2XWJB 5JTWA 5FO7B 5FOBB 1WZNA 4D94A 2XWBB 2WINB 2P35A 2WIIB 5FO8B 4LNVA 3G6JB 1Y8CA 3CU7A 5JPMA 5JPMB 4FXKA 4FXGA 3L3OB 4FXKB 4FXGB 3HRZB 2B39A 1JV3A 1JV1A 3FRPG 1JVDA 3KLSA 5JPNA 2I07B 1VM8A 5JPNB 2A73B 2ICEB
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2MHG A; 
#chains in the Genus database with same CATH topology
 1JVG A;  2PN5 A;  3T4A B;  3OHX B;  3PX2 A;  5FO9 B;  2MHG A;  2R6Z A;  3HS0 B;  2QKI B;  2A74 B;  2XWJ B;  5JTW A;  2PKW A;  5FO7 B;  2OYR A;  5FOB B;  4D94 A;  2XWB B;  2PGX A;  2WIN B;  4OQD A;  2WII B;  5FO8 B;  4LNV A;  3G6J B;  3PFG A;  3CU7 A;  4OQE A;  5JPM A;  5JPM B;  4FXK A;  4FXG A;  3L3O B;  4FXK B;  3BXO A;  4FXG B;  3HRZ B;  2B39 A;  3PFH A;  1JV3 A;  1JV1 A;  3PX3 A;  3FRP G;  1NT2 B;  1JVD A;  3KLS A;  5JPN A;  2I07 B;  1VM8 A;  5JPN B;  2A73 B;  2ICE B; 
#chains in the Genus database with same CATH homology
 1JVG A;  2PN5 A;  3T4A B;  3OHX B;  5FO9 B;  2MHG A;  3HS0 B;  3D2L A;  2QKI B;  2A74 B;  2XWJ B;  5JTW A;  5FO7 B;  5FOB B;  1WZN A;  4D94 A;  2XWB B;  2WIN B;  2P35 A;  2WII B;  5FO8 B;  4LNV A;  3G6J B;  1Y8C A;  3CU7 A;  5JPM A;  5JPM B;  4FXK A;  4FXG A;  3L3O B;  4FXK B;  4FXG B;  3HRZ B;  2B39 A;  1JV3 A;  1JV1 A;  3FRP G;  1JVD A;  3KLS A;  5JPN A;  2I07 B;  1VM8 A;  5JPN B;  2A73 B;  2ICE B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2MHGA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN