2NU5A

Crystal structure of a complex of griffithsin cocrystallized with n-acetylglucosamine
Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
121
structure length
121
Chain Sequence
SLTHRKFGGSGGSPFSGLSSIAVRSGSYLDAIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNISFETNMGRRFGPYGGSGGSANTLSNVKVIQINGSAGDYLDSLDIYYEQY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TVIII1 (16-19)TIV3 (33-36)EMPTYS1 (20-25)S5 (50-51)S4 (45-46)TIV1 (25-28)S2 (29-34)S7 (69-76)S11 (111-120)S3 (37-40)TII1 (53-56)TI1 (76-79)S6 (58-65)TIV6 (95-98)TIV4 (65-68)S10 (98-107)TIV7 (107-110)S8 (81-86)S9 (91-95)Updating...
connected with : NaN
molecule tags Antiviral protein,sugar binding protein
source organism Griffithsia sp.
publication title Crystallographic studies of the complexes of antiviral protein griffithsin with glucose and N-acetylglucosamine
pubmed doi rcsb
molecule keywords griffithsin
total genus 18
structure length 121
sequence length 121
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-11-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 2nu5A01
1J4TA 4GX7A 2GTYA 2HYQA 1VBOA 1J4UA 4R6OA 1VBPA 2BN0A 3APAA 3P8SA 5J51A 1ZGSA 1WS4C 5AV7A 3VZEA 3WOCA 3MIUA 3VZGA 1PXDA 2GUEA 3LLYA 3VY6A 1ZGRA 3R52A 5J50A 3AQGA 1UGWC 2HYRA 1JACA 1UGYA 1X1VA 1XXRA 4PIFA 4R6NA 1WS5A 1KUJA 3LKYA 1UH0A 1J4SA 3LL2A 1C3KA 4R6RA 1TP8A 5J4TA 2GUXA 1UH1A 5EXGA 3WOBA 4R6PA 3MITA 4PITA 1UGYC 1XXQA 3MIVA 1TOQA 3R51A 1WS5C 5J4XA 4AK4A 1C3NA 1JOTA 4WOGA 4DDNA 2GUDA 2NU5A 4PIKA 2GUCA 1UGXA 3R50A 3VZFA 3VY7A 4AKDA 3O44A 4PIUA 2JZ4A 3LM1A 4AKCA 1KU8A 3LL0A 1WS4A 2BMYA 5BN6E 4MQ0A 1M26A 4AKBA 2NUOA 3LLZA 1XEZA 1UGWA 4R6QA 2BMZA 1OUWA 5JM1A 1C3MA 3LL1A
chains in the Genus database with same CATH superfamily
1J4TA 4GX7A 2GTYA 1I5PA 2HYQA 1VBOA 1J4UA 4R6OA 1VBPA 1CIYA 2BN0A 3APAA 4MOAA 3P8SA 5J51A 1ZGSA 1WS4C 5AV7A 3VZEA 3WOCA 3MIUA 3VZGA 1PXDA 2GUEA 3LLYA 3VY6A 1ZGRA 3R52A 5J50A 3AQGA 1UGWC 2HYRA 1DLCA 1JACA 1UGYA 1X1VA 1XXRA 4PIFA 4R6NA 4QX2A 1WS5A 4QX3A 1KUJA 3LKYA 1UH0A 1J4SA 3LL2A 1C3KA 4R6RA 1TP8A 2QP2A 5J4TA 2GUXA 1UH1A 5EXGA 4QX0A 3WOBA 4ARYA 4R6PA 3MITA 1W99A 4PITA 3TOWA 4ARXA 1UGYC 1XXQA 3MIVA 1TOQA 3R51A 1WS5C 5J4XA 4QX1A 4AK4A 1JI6A 1C3NA 1JOTA 4WOGA 4DDNA 2GUDA 2NU5A 4PIKA 2GUCA 1UGXA 3R50A 3VZFA 3VY7A 4AKDA 3O44A 4PIUA 2JZ4A 3LM1A 4AKCA 1KU8A 3LL0A 1WS4A 2BMYA 5BN6E 4MQ0A 1M26A 4AKBA 2NUOA 3LLZA 1XEZA 3EB7A 1UGWA 4D8MA 4R6QA 2BMZA 1VMOA 1OUWA 4W8JA 2C9KA 5JM1A 1C3MA 3LL1A
chains in the Genus database with same CATH topology
1J4TA 4GX7A 2GTYA 2HYQA 1VBOA 1J4UA 4R6OA 1VBPA 2BN0A 3APAA 3P8SA 5J51A 1ZGSA 1WS4C 5AV7A 3VZEA 3WOCA 3MIUA 3VZGA 1PXDA 2GUEA 3LLYA 3VY6A 1ZGRA 3R52A 5J50A 3AQGA 1UGWC 2HYRA 1JACA 1UGYA 1X1VA 1XXRA 4PIFA 4R6NA 1WS5A 1KUJA 3LKYA 1UH0A 1J4SA 3LL2A 1C3KA 4R6RA 1TP8A 5J4TA 2GUXA 1UH1A 5EXGA 3WOBA 4R6PA 3MITA 4PITA 1UGYC 1XXQA 3MIVA 1TOQA 3R51A 1WS5C 5J4XA 4AK4A 1C3NA 1JOTA 4WOGA 4DDNA 2GUDA 2NU5A 4PIKA 2GUCA 1UGXA 3R50A 3VZFA 3VY7A 4AKDA 3O44A 4PIUA 2JZ4A 3LM1A 4AKCA 1KU8A 3LL0A 1WS4A 2BMYA 5BN6E 4MQ0A 1M26A 4AKBA 2NUOA 3LLZA 1XEZA 1UGWA 4R6QA 2BMZA 1OUWA 5JM1A 1C3MA 3LL1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J4T A;  4GX7 A;  2GTY A;  2HYQ A;  1VBO A;  1J4U A;  4R6O A;  1VBP A;  2BN0 A;  3APA A;  3P8S A;  5J51 A;  1ZGS A;  1WS4 C;  5AV7 A;  3VZE A;  3WOC A;  3MIU A;  3VZG A;  1PXD A;  2GUE A;  3LLY A;  3VY6 A;  1ZGR A;  3R52 A;  5J50 A;  3AQG A;  1UGW C;  2HYR A;  1JAC A;  1UGY A;  1X1V A;  1XXR A;  4PIF A;  4R6N A;  1WS5 A;  1KUJ A;  3LKY A;  1UH0 A;  1J4S A;  3LL2 A;  1C3K A;  4R6R A;  1TP8 A;  5J4T A;  2GUX A;  1UH1 A;  5EXG A;  3WOB A;  4R6P A;  3MIT A;  4PIT A;  1UGY C;  1XXQ A;  3MIV A;  1TOQ A;  3R51 A;  1WS5 C;  5J4X A;  4AK4 A;  1C3N A;  1JOT A;  4WOG A;  4DDN A;  2GUD A;  2NU5 A;  4PIK A;  2GUC A;  1UGX A;  3R50 A;  3VZF A;  3VY7 A;  4AKD A;  3O44 A;  4PIU A;  2JZ4 A;  3LM1 A;  4AKC A;  1KU8 A;  3LL0 A;  1WS4 A;  2BMY A;  5BN6 E;  4MQ0 A;  1M26 A;  4AKB A;  2NUO A;  3LLZ A;  1XEZ A;  1UGW A;  4R6Q A;  2BMZ A;  1OUW A;  5JM1 A;  1C3M A;  3LL1 A; 
#chains in the Genus database with same CATH topology
 1J4T A;  4GX7 A;  2GTY A;  1I5P A;  2HYQ A;  1VBO A;  1J4U A;  4R6O A;  1VBP A;  1CIY A;  2BN0 A;  3APA A;  4MOA A;  3P8S A;  5J51 A;  1ZGS A;  1WS4 C;  5AV7 A;  3VZE A;  3WOC A;  3MIU A;  3VZG A;  1PXD A;  2GUE A;  3LLY A;  3VY6 A;  1ZGR A;  3R52 A;  5J50 A;  3AQG A;  1UGW C;  2HYR A;  1DLC A;  1JAC A;  1UGY A;  1X1V A;  1XXR A;  4PIF A;  4R6N A;  4QX2 A;  1WS5 A;  4QX3 A;  1KUJ A;  3LKY A;  1UH0 A;  1J4S A;  3LL2 A;  1C3K A;  4R6R A;  1TP8 A;  2QP2 A;  5J4T A;  2GUX A;  1UH1 A;  5EXG A;  4QX0 A;  3WOB A;  4ARY A;  4R6P A;  3MIT A;  1W99 A;  4PIT A;  3TOW A;  4ARX A;  1UGY C;  1XXQ A;  3MIV A;  1TOQ A;  3R51 A;  1WS5 C;  5J4X A;  4QX1 A;  4AK4 A;  1JI6 A;  1C3N A;  1JOT A;  4WOG A;  4DDN A;  2GUD A;  2NU5 A;  4PIK A;  2GUC A;  1UGX A;  3R50 A;  3VZF A;  3VY7 A;  4AKD A;  3O44 A;  4PIU A;  2JZ4 A;  3LM1 A;  4AKC A;  1KU8 A;  3LL0 A;  1WS4 A;  2BMY A;  5BN6 E;  4MQ0 A;  1M26 A;  4AKB A;  2NUO A;  3LLZ A;  1XEZ A;  3EB7 A;  1UGW A;  4D8M A;  4R6Q A;  2BMZ A;  1VMO A;  1OUW A;  4W8J A;  2C9K A;  5JM1 A;  1C3M A;  3LL1 A; 
#chains in the Genus database with same CATH homology
 1J4T A;  4GX7 A;  2GTY A;  2HYQ A;  1VBO A;  1J4U A;  4R6O A;  1VBP A;  2BN0 A;  3APA A;  3P8S A;  5J51 A;  1ZGS A;  1WS4 C;  5AV7 A;  3VZE A;  3WOC A;  3MIU A;  3VZG A;  1PXD A;  2GUE A;  3LLY A;  3VY6 A;  1ZGR A;  3R52 A;  5J50 A;  3AQG A;  1UGW C;  2HYR A;  1JAC A;  1UGY A;  1X1V A;  1XXR A;  4PIF A;  4R6N A;  1WS5 A;  1KUJ A;  3LKY A;  1UH0 A;  1J4S A;  3LL2 A;  1C3K A;  4R6R A;  1TP8 A;  5J4T A;  2GUX A;  1UH1 A;  5EXG A;  3WOB A;  4R6P A;  3MIT A;  4PIT A;  1UGY C;  1XXQ A;  3MIV A;  1TOQ A;  3R51 A;  1WS5 C;  5J4X A;  4AK4 A;  1C3N A;  1JOT A;  4WOG A;  4DDN A;  2GUD A;  2NU5 A;  4PIK A;  2GUC A;  1UGX A;  3R50 A;  3VZF A;  3VY7 A;  4AKD A;  3O44 A;  4PIU A;  2JZ4 A;  3LM1 A;  4AKC A;  1KU8 A;  3LL0 A;  1WS4 A;  2BMY A;  5BN6 E;  4MQ0 A;  1M26 A;  4AKB A;  2NUO A;  3LLZ A;  1XEZ A;  1UGW A;  4R6Q A;  2BMZ A;  1OUW A;  5JM1 A;  1C3M A;  3LL1 A; 
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similar chains in the Genus database (?% sequence similarity)
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