2NUOA

Crystal structure of a complex of griffithsin with glucose
Total Genus 18

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
121
structure length
121
Chain Sequence
SLTHRKFGGSGGSPFSGLSSIAVRSGSYLDAIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNISFETNMGRRFGPYGGSGGSANTLSNVKVIQINGSAGDYLDSLDIYYEQY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
TVIII1 (16-19)TIV3 (33-36)EMPTYS1 (20-25)S5 (50-51)S4 (45-46)TIV1 (25-28)S2 (29-34)S7 (69-76)S11 (111-120)S3 (37-40)TII1 (53-56)TI1 (76-79)S6 (58-65)TIV6 (95-98)TIV4 (65-68)S10 (98-107)TIV7 (107-110)S8 (81-86)S9 (91-95)Updating...
connected with : NaN
publication title Crystallographic studies of the complexes of antiviral protein griffithsin with glucose and N-acetylglucosamine.
pubmed doi rcsb
molecule keywords Griffithsin
molecule tags Sugar binding protein
source organism Griffithsia
total genus 18
structure length 121
sequence length 121
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 2nuoA01
3LL2A 3R52A 3WOCA 3LM1A 4AKCA 1TOQA 1WS5A 4PIKA 1UGYC 5J4TA 4R6NA 5J51A 1VBPA 1OUWA 1XXQA 5EXGA 3LL1A 4AK4A 2HYRA 1KUJA 3MIVA 2BMZA 1ZGRA 1WS4C 1ZGSA 5AV7A 3LL0A 3APAA 3VZEA 5BN6E 1JOTA 3MITA 4GX7A 1PXDA 1JACA 3LLYA 2BMYA 2BN0A 1UGWA 1J4SA 4AKBA 3O44A 1UGYA 2NUOA 1KU8A 3WOBA 3LKYA 1C3NA 3AQGA 1XXRA 1C3KA 5J4XA 2GUXA 4MQ0A 4R6QA 1J4UA 1WS4A 2JZ4A 3LLZA 3VZGA 2GUDA 4DDNA 1VBOA 3P8SA 4WOGA 4PIUA 2HYQA 1WS5C 1TP8A 1C3MA 5J50A 1XEZA 4AKDA 1UH0A 3MIUA 5JM1A 3VY7A 1UGXA 4R6OA 4R6RA 2GUEA 3VZFA 4PIFA 1UH1A 1X1VA 2GTYA 4PITA 1M26A 3R51A 3R50A 1UGWC 2GUCA 3VY6A 4R6PA 1J4TA 2NU5A
chains in the Genus database with same CATH superfamily
3LL2A 3R52A 3WOCA 3LM1A 1DLCA 4AKCA 1TOQA 1WS5A 4PIKA 1UGYC 4QX3A 5J4TA 4R6NA 3TOWA 5J51A 1VBPA 1OUWA 1XXQA 5EXGA 3LL1A 4AK4A 2HYRA 1KUJA 3MIVA 4QX1A 2BMZA 1ZGRA 1CIYA 1ZGSA 5AV7A 1WS4C 3LL0A 3APAA 3VZEA 5BN6E 1JOTA 3MITA 4GX7A 1PXDA 1JACA 3LLYA 4ARYA 2BMYA 2BN0A 1UGWA 1J4SA 4AKBA 3O44A 1UGYA 2NUOA 1KU8A 1I5PA 3WOBA 3LKYA 1C3NA 3AQGA 1XXRA 1C3KA 1JI6A 5J4XA 2GUXA 4MQ0A 1VMOA 4R6QA 1J4UA 1WS4A 2JZ4A 4MOAA 3LLZA 3VZGA 2GUDA 4DDNA 1VBOA 3P8SA 3EB7A 4WOGA 4PIUA 2HYQA 1WS5C 4D8MA 1TP8A 1C3MA 5J50A 4W8JA 1XEZA 4QX2A 4AKDA 1UH0A 3MIUA 5JM1A 4ARXA 3VY7A 1UGXA 4R6OA 4R6RA 2GUEA 3VZFA 4PIFA 1UH1A 1W99A 1X1VA 2QP2A 2C9KA 4QX0A 2GTYA 4PITA 1M26A 3R51A 3R50A 1UGWC 2GUCA 3VY6A 4R6PA 1J4TA 2NU5A
chains in the Genus database with same CATH topology
3LL2A 3R52A 3WOCA 3LM1A 4AKCA 1TOQA 1WS5A 4PIKA 1UGYC 5J4TA 4R6NA 5J51A 1VBPA 1OUWA 1XXQA 5EXGA 3LL1A 4AK4A 2HYRA 1KUJA 3MIVA 2BMZA 1ZGRA 1WS4C 1ZGSA 5AV7A 3LL0A 3APAA 3VZEA 5BN6E 1JOTA 3MITA 4GX7A 1PXDA 1JACA 3LLYA 2BMYA 2BN0A 1UGWA 1J4SA 4AKBA 3O44A 1UGYA 2NUOA 1KU8A 3WOBA 3LKYA 1C3NA 3AQGA 1XXRA 1C3KA 5J4XA 2GUXA 4MQ0A 4R6QA 1J4UA 1WS4A 2JZ4A 3LLZA 3VZGA 2GUDA 4DDNA 1VBOA 3P8SA 4WOGA 4PIUA 2HYQA 1WS5C 1TP8A 1C3MA 5J50A 1XEZA 4AKDA 1UH0A 3MIUA 5JM1A 3VY7A 1UGXA 4R6OA 4R6RA 2GUEA 3VZFA 4PIFA 1UH1A 1X1VA 2GTYA 4PITA 1M26A 3R51A 3R50A 1UGWC 2GUCA 3VY6A 4R6PA 1J4TA 2NU5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LL2 A;  3R52 A;  3WOC A;  3LM1 A;  4AKC A;  1TOQ A;  1WS5 A;  4PIK A;  1UGY C;  5J4T A;  4R6N A;  5J51 A;  1VBP A;  1OUW A;  1XXQ A;  5EXG A;  3LL1 A;  4AK4 A;  2HYR A;  1KUJ A;  3MIV A;  2BMZ A;  1ZGR A;  1WS4 C;  1ZGS A;  5AV7 A;  3LL0 A;  3APA A;  3VZE A;  5BN6 E;  1JOT A;  3MIT A;  4GX7 A;  1PXD A;  1JAC A;  3LLY A;  2BMY A;  2BN0 A;  1UGW A;  1J4S A;  4AKB A;  3O44 A;  1UGY A;  2NUO A;  1KU8 A;  3WOB A;  3LKY A;  1C3N A;  3AQG A;  1XXR A;  1C3K A;  5J4X A;  2GUX A;  4MQ0 A;  4R6Q A;  1J4U A;  1WS4 A;  2JZ4 A;  3LLZ A;  3VZG A;  2GUD A;  4DDN A;  1VBO A;  3P8S A;  4WOG A;  4PIU A;  2HYQ A;  1WS5 C;  1TP8 A;  1C3M A;  5J50 A;  1XEZ A;  4AKD A;  1UH0 A;  3MIU A;  5JM1 A;  3VY7 A;  1UGX A;  4R6O A;  4R6R A;  2GUE A;  3VZF A;  4PIF A;  1UH1 A;  1X1V A;  2GTY A;  4PIT A;  1M26 A;  3R51 A;  3R50 A;  1UGW C;  2GUC A;  3VY6 A;  4R6P A;  1J4T A;  2NU5 A; 
#chains in the Genus database with same CATH topology
 3LL2 A;  3R52 A;  3WOC A;  3LM1 A;  1DLC A;  4AKC A;  1TOQ A;  1WS5 A;  4PIK A;  1UGY C;  4QX3 A;  5J4T A;  4R6N A;  3TOW A;  5J51 A;  1VBP A;  1OUW A;  1XXQ A;  5EXG A;  3LL1 A;  4AK4 A;  2HYR A;  1KUJ A;  3MIV A;  4QX1 A;  2BMZ A;  1ZGR A;  1CIY A;  1ZGS A;  5AV7 A;  1WS4 C;  3LL0 A;  3APA A;  3VZE A;  5BN6 E;  1JOT A;  3MIT A;  4GX7 A;  1PXD A;  1JAC A;  3LLY A;  4ARY A;  2BMY A;  2BN0 A;  1UGW A;  1J4S A;  4AKB A;  3O44 A;  1UGY A;  2NUO A;  1KU8 A;  1I5P A;  3WOB A;  3LKY A;  1C3N A;  3AQG A;  1XXR A;  1C3K A;  1JI6 A;  5J4X A;  2GUX A;  4MQ0 A;  1VMO A;  4R6Q A;  1J4U A;  1WS4 A;  2JZ4 A;  4MOA A;  3LLZ A;  3VZG A;  2GUD A;  4DDN A;  1VBO A;  3P8S A;  3EB7 A;  4WOG A;  4PIU A;  2HYQ A;  1WS5 C;  4D8M A;  1TP8 A;  1C3M A;  5J50 A;  4W8J A;  1XEZ A;  4QX2 A;  4AKD A;  1UH0 A;  3MIU A;  5JM1 A;  4ARX A;  3VY7 A;  1UGX A;  4R6O A;  4R6R A;  2GUE A;  3VZF A;  4PIF A;  1UH1 A;  1W99 A;  1X1V A;  2QP2 A;  2C9K A;  4QX0 A;  2GTY A;  4PIT A;  1M26 A;  3R51 A;  3R50 A;  1UGW C;  2GUC A;  3VY6 A;  4R6P A;  1J4T A;  2NU5 A; 
#chains in the Genus database with same CATH homology
 3LL2 A;  3R52 A;  3WOC A;  3LM1 A;  4AKC A;  1TOQ A;  1WS5 A;  4PIK A;  1UGY C;  5J4T A;  4R6N A;  5J51 A;  1VBP A;  1OUW A;  1XXQ A;  5EXG A;  3LL1 A;  4AK4 A;  2HYR A;  1KUJ A;  3MIV A;  2BMZ A;  1ZGR A;  1WS4 C;  1ZGS A;  5AV7 A;  3LL0 A;  3APA A;  3VZE A;  5BN6 E;  1JOT A;  3MIT A;  4GX7 A;  1PXD A;  1JAC A;  3LLY A;  2BMY A;  2BN0 A;  1UGW A;  1J4S A;  4AKB A;  3O44 A;  1UGY A;  2NUO A;  1KU8 A;  3WOB A;  3LKY A;  1C3N A;  3AQG A;  1XXR A;  1C3K A;  5J4X A;  2GUX A;  4MQ0 A;  4R6Q A;  1J4U A;  1WS4 A;  2JZ4 A;  3LLZ A;  3VZG A;  2GUD A;  4DDN A;  1VBO A;  3P8S A;  4WOG A;  4PIU A;  2HYQ A;  1WS5 C;  1TP8 A;  1C3M A;  5J50 A;  1XEZ A;  4AKD A;  1UH0 A;  3MIU A;  5JM1 A;  3VY7 A;  1UGX A;  4R6O A;  4R6R A;  2GUE A;  3VZF A;  4PIF A;  1UH1 A;  1X1V A;  2GTY A;  4PIT A;  1M26 A;  3R51 A;  3R50 A;  1UGW C;  2GUC A;  3VY6 A;  4R6P A;  1J4T A;  2NU5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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