2NUOA

Crystal structure of a complex of griffithsin with glucose
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
121
structure length
121
Chain Sequence
SLTHRKFGGSGGSPFSGLSSIAVRSGSYLDAIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNISFETNMGRRFGPYGGSGGSANTLSNVKVIQINGSAGDYLDSLDIYYEQY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystallographic studies of the complexes of antiviral protein griffithsin with glucose and N-acetylglucosamine.
pubmed doi rcsb
molecule tags Sugar binding protein
source organism Griffithsia
molecule keywords Griffithsin
total genus 18
structure length 121
sequence length 121
chains with identical sequence B
ec nomenclature
pdb deposition date 2006-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 2nuoA01
1VBOA 1ZGSA 2GUCA 1XXQA 3O44A 5EXGA 1WS4C 1KUJA 2BMYA 4MQ0A 1UGYC 4R6NA 1ZGRA 5J51A 1UGXA 1J4SA 1JOTA 2HYRA 4R6QA 1UGWC 1OUWA 1C3KA 1UH1A 3MIVA 2BN0A 1WS5C 3MIUA 4AK4A 3APAA 1X1VA 1M26A 1XEZA 4WOGA 3R51A 4PIUA 4AKCA 5J4TA 4AKDA 4R6RA 2NU5A 2HYQA 3LL1A 1J4TA 1JACA 2GUEA 3VZEA 1KU8A 1J4UA 5JM1A 3R52A 1TOQA 4DDNA 3LLZA 4AKBA 5AV7A 1VBPA 3AQGA 3LL2A 4PITA 1C3NA 1UH0A 2JZ4A 3LLYA 3LM1A 3LKYA 1C3MA 1XXRA 2GUXA 4GX7A 3VZGA 2GUDA 3R50A 1WS4A 3WOCA 4PIKA 1UGYA 5J50A 3LL0A 3VY6A 3VY7A 5BN6E 2BMZA 1UGWA 3MITA 3P8SA 3VZFA 1WS5A 1PXDA 4R6PA 5J4XA 4R6OA 2NUOA 1TP8A 2GTYA 4PIFA 3WOBA
chains in the Genus database with same CATH superfamily
1VBOA 1ZGSA 2GUCA 1XXQA 1JI6A 3O44A 5EXGA 1WS4C 1W99A 1KUJA 2BMYA 4MQ0A 1UGYC 4R6NA 1ZGRA 5J51A 1UGXA 1J4SA 1JOTA 2HYRA 3EB7A 4R6QA 4QX0A 1UGWC 1OUWA 4D8MA 1C3KA 1CIYA 1UH1A 3MIVA 2BN0A 1WS5C 3MIUA 4AK4A 3APAA 1X1VA 1M26A 1XEZA 4WOGA 3R51A 4PIUA 1I5PA 4AKCA 5J4TA 4AKDA 4R6RA 2NU5A 2HYQA 3LL1A 1VMOA 1J4TA 4QX1A 1JACA 2GUEA 3VZEA 1KU8A 1J4UA 5JM1A 3R52A 1TOQA 4DDNA 3LLZA 4AKBA 5AV7A 4ARYA 4W8JA 1VBPA 3AQGA 3LL2A 4QX2A 2C9KA 4PITA 1C3NA 1UH0A 2JZ4A 3LLYA 3LM1A 2QP2A 3LKYA 1C3MA 1XXRA 2GUXA 4GX7A 3VZGA 4QX3A 2GUDA 3R50A 1DLCA 1WS4A 3WOCA 4PIKA 1UGYA 5J50A 3LL0A 3VY6A 3VY7A 5BN6E 2BMZA 1UGWA 4ARXA 3MITA 3P8SA 3VZFA 1WS5A 1PXDA 4R6PA 5J4XA 4R6OA 2NUOA 1TP8A 4MOAA 4PIFA 2GTYA 3WOBA 3TOWA
chains in the Genus database with same CATH topology
1VBOA 1ZGSA 2GUCA 1XXQA 3O44A 5EXGA 1WS4C 1KUJA 2BMYA 4MQ0A 1UGYC 4R6NA 1ZGRA 5J51A 1UGXA 1J4SA 1JOTA 2HYRA 4R6QA 1UGWC 1OUWA 1C3KA 1UH1A 3MIVA 2BN0A 1WS5C 3MIUA 4AK4A 3APAA 1X1VA 1M26A 1XEZA 4WOGA 3R51A 4PIUA 4AKCA 5J4TA 4AKDA 4R6RA 2NU5A 2HYQA 3LL1A 1J4TA 1JACA 2GUEA 3VZEA 1KU8A 1J4UA 5JM1A 3R52A 1TOQA 4DDNA 3LLZA 4AKBA 5AV7A 1VBPA 3AQGA 3LL2A 4PITA 1C3NA 1UH0A 2JZ4A 3LLYA 3LM1A 3LKYA 1C3MA 1XXRA 2GUXA 4GX7A 3VZGA 2GUDA 3R50A 1WS4A 3WOCA 4PIKA 1UGYA 5J50A 3LL0A 3VY6A 3VY7A 5BN6E 2BMZA 1UGWA 3MITA 3P8SA 3VZFA 1WS5A 1PXDA 4R6PA 5J4XA 4R6OA 2NUOA 1TP8A 2GTYA 4PIFA 3WOBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VBO A;  1ZGS A;  2GUC A;  1XXQ A;  3O44 A;  5EXG A;  1WS4 C;  1KUJ A;  2BMY A;  4MQ0 A;  1UGY C;  4R6N A;  1ZGR A;  5J51 A;  1UGX A;  1J4S A;  1JOT A;  2HYR A;  4R6Q A;  1UGW C;  1OUW A;  1C3K A;  1UH1 A;  3MIV A;  2BN0 A;  1WS5 C;  3MIU A;  4AK4 A;  3APA A;  1X1V A;  1M26 A;  1XEZ A;  4WOG A;  3R51 A;  4PIU A;  4AKC A;  5J4T A;  4AKD A;  4R6R A;  2NU5 A;  2HYQ A;  3LL1 A;  1J4T A;  1JAC A;  2GUE A;  3VZE A;  1KU8 A;  1J4U A;  5JM1 A;  3R52 A;  1TOQ A;  4DDN A;  3LLZ A;  4AKB A;  5AV7 A;  1VBP A;  3AQG A;  3LL2 A;  4PIT A;  1C3N A;  1UH0 A;  2JZ4 A;  3LLY A;  3LM1 A;  3LKY A;  1C3M A;  1XXR A;  2GUX A;  4GX7 A;  3VZG A;  2GUD A;  3R50 A;  1WS4 A;  3WOC A;  4PIK A;  1UGY A;  5J50 A;  3LL0 A;  3VY6 A;  3VY7 A;  5BN6 E;  2BMZ A;  1UGW A;  3MIT A;  3P8S A;  3VZF A;  1WS5 A;  1PXD A;  4R6P A;  5J4X A;  4R6O A;  2NUO A;  1TP8 A;  2GTY A;  4PIF A;  3WOB A; 
#chains in the Genus database with same CATH topology
 1VBO A;  1ZGS A;  2GUC A;  1XXQ A;  1JI6 A;  3O44 A;  5EXG A;  1WS4 C;  1W99 A;  1KUJ A;  2BMY A;  4MQ0 A;  1UGY C;  4R6N A;  1ZGR A;  5J51 A;  1UGX A;  1J4S A;  1JOT A;  2HYR A;  3EB7 A;  4R6Q A;  4QX0 A;  1UGW C;  1OUW A;  4D8M A;  1C3K A;  1CIY A;  1UH1 A;  3MIV A;  2BN0 A;  1WS5 C;  3MIU A;  4AK4 A;  3APA A;  1X1V A;  1M26 A;  1XEZ A;  4WOG A;  3R51 A;  4PIU A;  1I5P A;  4AKC A;  5J4T A;  4AKD A;  4R6R A;  2NU5 A;  2HYQ A;  3LL1 A;  1VMO A;  1J4T A;  4QX1 A;  1JAC A;  2GUE A;  3VZE A;  1KU8 A;  1J4U A;  5JM1 A;  3R52 A;  1TOQ A;  4DDN A;  3LLZ A;  4AKB A;  5AV7 A;  4ARY A;  4W8J A;  1VBP A;  3AQG A;  3LL2 A;  4QX2 A;  2C9K A;  4PIT A;  1C3N A;  1UH0 A;  2JZ4 A;  3LLY A;  3LM1 A;  2QP2 A;  3LKY A;  1C3M A;  1XXR A;  2GUX A;  4GX7 A;  3VZG A;  4QX3 A;  2GUD A;  3R50 A;  1DLC A;  1WS4 A;  3WOC A;  4PIK A;  1UGY A;  5J50 A;  3LL0 A;  3VY6 A;  3VY7 A;  5BN6 E;  2BMZ A;  1UGW A;  4ARX A;  3MIT A;  3P8S A;  3VZF A;  1WS5 A;  1PXD A;  4R6P A;  5J4X A;  4R6O A;  2NUO A;  1TP8 A;  4MOA A;  4PIF A;  2GTY A;  3WOB A;  3TOW A; 
#chains in the Genus database with same CATH homology
 1VBO A;  1ZGS A;  2GUC A;  1XXQ A;  3O44 A;  5EXG A;  1WS4 C;  1KUJ A;  2BMY A;  4MQ0 A;  1UGY C;  4R6N A;  1ZGR A;  5J51 A;  1UGX A;  1J4S A;  1JOT A;  2HYR A;  4R6Q A;  1UGW C;  1OUW A;  1C3K A;  1UH1 A;  3MIV A;  2BN0 A;  1WS5 C;  3MIU A;  4AK4 A;  3APA A;  1X1V A;  1M26 A;  1XEZ A;  4WOG A;  3R51 A;  4PIU A;  4AKC A;  5J4T A;  4AKD A;  4R6R A;  2NU5 A;  2HYQ A;  3LL1 A;  1J4T A;  1JAC A;  2GUE A;  3VZE A;  1KU8 A;  1J4U A;  5JM1 A;  3R52 A;  1TOQ A;  4DDN A;  3LLZ A;  4AKB A;  5AV7 A;  1VBP A;  3AQG A;  3LL2 A;  4PIT A;  1C3N A;  1UH0 A;  2JZ4 A;  3LLY A;  3LM1 A;  3LKY A;  1C3M A;  1XXR A;  2GUX A;  4GX7 A;  3VZG A;  2GUD A;  3R50 A;  1WS4 A;  3WOC A;  4PIK A;  1UGY A;  5J50 A;  3LL0 A;  3VY6 A;  3VY7 A;  5BN6 E;  2BMZ A;  1UGW A;  3MIT A;  3P8S A;  3VZF A;  1WS5 A;  1PXD A;  4R6P A;  5J4X A;  4R6O A;  2NUO A;  1TP8 A;  2GTY A;  4PIF A;  3WOB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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