2QD0A

Crystal structure of mitoneet
Total Genus 11

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
64
structure length
64
Chain Sequence
AMINLHIQKDNPKIVHAFDMEDLGDKAVYCRCWRSKKFPFCDGAHTKHNEETGDNVGPLIIKKK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (62-64)EMPTYTIV1 (46-49)TVIII2 (51-54)TVIII3 (53-56)TI1 (50-53)TVIII1 (44-47)TIV2 (48-51)Updating...
connected with : NaN
publication title Crystal structure of human mitoNEET reveals distinct groups of iron sulfur proteins.
pubmed doi rcsb
molecule tags Metal binding protein
source organism Homo sapiens
molecule keywords Zinc finger CDGSH domain-containing protein 1
total genus 11
structure length 64
sequence length 64
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-06-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09360 zf-CDGSH Iron-binding zinc finger CDGSH type
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.5.90 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L9; domain 1 Ribosomal Protein L9; domain 1 2qd0A01
3TBOA 4OO7A 4F1EA 3FNVA 3EW0A 2QH7A 4F2CA 2QD0A 4EZFA 3S2QA 2R13A 4OOAA 3S2RA 3TBNA 4F28A 3LPQA 3REEA
chains in the Genus database with same CATH superfamily
5GHSC 3CO4A 3EW0A 4FSDA 2EHOC 4RSRA 3ANWA 2E9XB 2R13A 4UY8H 3TBOA 4F28A 3LPQA 5EG5A 3S2QA 3TBNA 4F1EA 2QH7A 2HJQA 4KW7A 2HBBA 2OUTA 2X4AA 4EZFA 4OOAA 2Q9QA 3FNDA 3REEA 4OO7A 2E9XD 1CQUA 3J7ZH 2X49A 2QD0A 3S2RA 2HVFA 2LSMA 2HBAA 2Q9QB 3FNVA 4F2CA 5GHRB 1DIVA 4FR0A 4FS8A
chains in the Genus database with same CATH topology
5GHSC 3EW0A 4FSDA 2EHOC 4RSRA 3ANWA 2E9XB 2R13A 3TBOA 4F28A 3LPQA 5EG5A 3S2QA 3TBNA 4F1EA 2QH7A 4KW7A 2OUTA 2X4AA 4EZFA 4OOAA 2Q9QA 3REEA 4OO7A 2E9XD 2X49A 2QD0A 3S2RA 2LSMA 2Q9QB 3FNVA 4F2CA 5GHRB 4FR0A 4FS8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TBO A;  4OO7 A;  4F1E A;  3FNV A;  3EW0 A;  2QH7 A;  4F2C A;  2QD0 A;  4EZF A;  3S2Q A;  2R13 A;  4OOA A;  3S2R A;  3TBN A;  4F28 A;  3LPQ A;  3REE A; 
#chains in the Genus database with same CATH topology
 5GHS C;  3CO4 A;  3EW0 A;  4FSD A;  2EHO C;  4RSR A;  3ANW A;  2E9X B;  2R13 A;  4UY8 H;  3TBO A;  4F28 A;  3LPQ A;  5EG5 A;  3S2Q A;  3TBN A;  4F1E A;  2QH7 A;  2HJQ A;  4KW7 A;  2HBB A;  2OUT A;  2X4A A;  4EZF A;  4OOA A;  2Q9Q A;  3FND A;  3REE A;  4OO7 A;  2E9X D;  1CQU A;  3J7Z H;  2X49 A;  2QD0 A;  3S2R A;  2HVF A;  2LSM A;  2HBA A;  2Q9Q B;  3FNV A;  4F2C A;  5GHR B;  1DIV A;  4FR0 A;  4FS8 A; 
#chains in the Genus database with same CATH homology
 5GHS C;  3EW0 A;  4FSD A;  2EHO C;  4RSR A;  3ANW A;  2E9X B;  2R13 A;  3TBO A;  4F28 A;  3LPQ A;  5EG5 A;  3S2Q A;  3TBN A;  4F1E A;  2QH7 A;  4KW7 A;  2OUT A;  2X4A A;  4EZF A;  4OOA A;  2Q9Q A;  3REE A;  4OO7 A;  2E9X D;  2X49 A;  2QD0 A;  3S2R A;  2LSM A;  2Q9Q B;  3FNV A;  4F2C A;  5GHR B;  4FR0 A;  4FS8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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