2QP2A

Structure of a macpf/perforin-like protein
Total Genus 155
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
155
sequence length
502
structure length
498
Chain Sequence
KSLEQENSERDVEIRDRNYFRKLSLFDDTVIAGAEMIGTSYDVFGKYCNVGSCMNSLFDERKINASEDNFKKVTILGKTLKVPYYIDCYSVGDLKYTNASGESIESYQSNISSKSRIKGNYLFFSASLKVDFDTDSLTDFENAFSRIQYTYDLYILKSSAEALKEFLKESVKTALDKADTEEDMNDLFNTWGSHFLSGVVMGGCAQYSSSTNKYTSNLTNSFDVVAAASFAGFIGLSARTGNSFMEDIKKFRSASNIKTHAIGGDLSRFDPFGGATSADQPSAEEIAAAKKAFEDWKASVPNAPELVNFADSNPLTGIWELCSDRTQKAKLKKHFETVWAPAESAKRRVHADYIDEIIIGINNTNTPPEGYIGLKSTKDENLNSKGNICLFMHKAKYDPNIDNKDCITELKFITVRDKSPEGDWVKIPQDIYISPNQYLYLCYLPAKYSAEKAIKDIQLLCSSMILPYGYNDVLDERGERANATEDDNVHYLIYSAGW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title A common fold mediates vertebrate defense and bacterial attack
pubmed doi rcsb
molecule tags Unknown function
source organism Photorhabdus luminescens subsp. laumondii
molecule keywords Unknown protein
total genus 155
structure length 498
sequence length 502
ec nomenclature
pdb deposition date 2007-07-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01823 MACPF MAC/Perforin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.50 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Vitelline Membrane Outer Layer Protein I, subunit A 2qp2A02
2QP2A 3TOWA
chains in the Genus database with same CATH superfamily
4MQ0A 4QX0A 1C3NA 1JACA 1VBPA 2GUXA 3LKYA 1JOTA 1PXDA 4AKCA 2GTYA 1ZGSA 3MITA 1XEZA 2NU5A 2BMYA 4R6NA 3MIUA 1ZGRA 3LL0A 1CIYA 1UGXA 3VY7A 1VBOA 4PIKA 3O44A 1WS4C 1I5PA 4R6OA 1VMOA 1UGYC 2QP2A 4QX1A 3AQGA 2GUEA 2C9KA 1UGWC 1DLCA 5AV7A 4R6PA 3LL2A 4PITA 4DDNA 1C3MA 2BN0A 3LM1A 1JI6A 4R6RA 3LLYA 1WS5C 5J4XA 4QX2A 1C3KA 4WOGA 3MIVA 3EB7A 1UH1A 4AKDA 4AKBA 1WS4A 4ARXA 1W99A 1XXRA 1UGYA 4MOAA 4PIUA 5J4TA 3LL1A 2BMZA 1J4SA 1OUWA 1KUJA 3TOWA 1J4UA 2HYRA 3R50A 3VY6A 4D8MA 1J4TA 4W8JA 3VZGA 1TOQA 2HYQA 4PIFA 1X1VA 3P8SA 1WS5A 3APAA 4ARYA 3VZEA 5JM1A 1TP8A 2GUCA 3WOCA 4GX7A 3WOBA 5J50A 1UGWA 5EXGA 5BN6E 2JZ4A 4R6QA 3R52A 2GUDA 5J51A 1KU8A 1UH0A 1M26A 3R51A 2NUOA 3VZFA 1XXQA 3LLZA 4AK4A 4QX3A
chains in the Genus database with same CATH topology
4D8MA 2QP2A 3TOWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QP2 A;  3TOW A; 
#chains in the Genus database with same CATH topology
 4MQ0 A;  4QX0 A;  1C3N A;  1JAC A;  1VBP A;  2GUX A;  3LKY A;  1JOT A;  1PXD A;  4AKC A;  2GTY A;  1ZGS A;  3MIT A;  1XEZ A;  2NU5 A;  2BMY A;  4R6N A;  3MIU A;  1ZGR A;  3LL0 A;  1CIY A;  1UGX A;  3VY7 A;  1VBO A;  4PIK A;  3O44 A;  1WS4 C;  1I5P A;  4R6O A;  1VMO A;  1UGY C;  2QP2 A;  4QX1 A;  3AQG A;  2GUE A;  2C9K A;  1UGW C;  1DLC A;  5AV7 A;  4R6P A;  3LL2 A;  4PIT A;  4DDN A;  1C3M A;  2BN0 A;  3LM1 A;  1JI6 A;  4R6R A;  3LLY A;  1WS5 C;  5J4X A;  4QX2 A;  1C3K A;  4WOG A;  3MIV A;  3EB7 A;  1UH1 A;  4AKD A;  4AKB A;  1WS4 A;  4ARX A;  1W99 A;  1XXR A;  1UGY A;  4MOA A;  4PIU A;  5J4T A;  3LL1 A;  2BMZ A;  1J4S A;  1OUW A;  1KUJ A;  3TOW A;  1J4U A;  2HYR A;  3R50 A;  3VY6 A;  4D8M A;  1J4T A;  4W8J A;  3VZG A;  1TOQ A;  2HYQ A;  4PIF A;  1X1V A;  3P8S A;  1WS5 A;  3APA A;  4ARY A;  3VZE A;  5JM1 A;  1TP8 A;  2GUC A;  3WOC A;  4GX7 A;  3WOB A;  5J50 A;  1UGW A;  5EXG A;  5BN6 E;  2JZ4 A;  4R6Q A;  3R52 A;  2GUD A;  5J51 A;  1KU8 A;  1UH0 A;  1M26 A;  3R51 A;  2NUO A;  3VZF A;  1XXQ A;  3LLZ A;  4AK4 A;  4QX3 A; 
#chains in the Genus database with same CATH homology
 4D8M A;  2QP2 A;  3TOW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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