2QP2 | Genus

Total Genus 155

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	155
sequence length	502
structure length	498
Chain Sequence	KSLEQENSERDVEIRDRNYFRKLSLFDDTVIAGAEMIGTSYDVFGKYCNVGSCMNSLFDERKINASEDNFKKVTILGKTLKVPYYIDCYSVGDLKYTNASGESIESYQSNISSKSRIKGNYLFFSASLKVDFDTDSLTDFENAFSRIQYTYDLYILKSSAEALKEFLKESVKTALDKADTEEDMNDLFNTWGSHFLSGVVMGGCAQYSSSTNKYTSNLTNSFDVVAAASFAGFIGLSARTGNSFMEDIKKFRSASNIKTHAIGGDLSRFDPFGGATSADQPSAEEIAAAKKAFEDWKASVPNAPELVNFADSNPLTGIWELCSDRTQKAKLKKHFETVWAPAESAKRRVHADYIDEIIIGINNTNTPPEGYIGLKSTKDENLNSKGNICLFMHKAKYDPNIDNKDCITELKFITVRDKSPEGDWVKIPQDIYISPNQYLYLCYLPAKYSAEKAIKDIQLLCSSMILPYGYNDVLDERGERANATEDDNVHYLIYSAGW

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cfd839ffceb31809b2e6077/pdb.gz): 1135 ms

reading 498 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

498 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 30 ms

Adding embedded #jmolscript: select ({0:497});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Unknown function
source organism	Photorhabdus luminescens subsp. laumondii
publication title	A common fold mediates vertebrate defense and bacterial attack pubmed doi rcsb
molecule keywords	Unknown protein
total genus	155
structure length	498
sequence length	502
ec nomenclature
pdb deposition date	2007-07-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01823	MACPF	MAC/Perforin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.50	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Vitelline Membrane Outer Layer Protein I, subunit A	2qp2A02

2QP2A 3TOWA
chains in the Genus database with same CATH superfamily

4ARXA 2C9KA 1C3KA 4PIKA 3LL0A 5AV7A 4W8JA 3EB7A 4QX3A 3WOBA 1UH1A 1CIYA 1XEZA 1X1VA 3LLZA 1C3MA 4AKBA 1JACA 4DDNA 3R52A 3VZFA 2JZ4A 5J4TA 4AKDA 1TP8A 1WS5C 1TOQA 1WS5A 3VZGA 5J4XA 1UGWC 2GUCA 3VY7A 4QX2A 1UGWA 3LL1A 4PIUA 2GUDA 1PXDA 2BN0A 2GUEA 2GTYA 4R6PA 5J51A 1I5PA 1VMOA 5J50A 1C3NA 3TOWA 1VBPA 3AQGA 4MOAA 4GX7A 1JOTA 2BMZA 3VZEA 3P8SA 1XXRA 1ZGSA 2GUXA 1UH0A 1WS4C 3O44A 4ARYA 5BN6E 4WOGA 1OUWA 3LKYA 1M26A 1UGXA 3MIUA 1UGYC 4R6QA 3VY6A 3MIVA 1KU8A 2QP2A 4R6NA 2NUOA 1KUJA 4PITA 1J4SA 2NU5A 3MITA 2BMYA 4R6RA 1WS4A 1ZGRA 3APAA 1JI6A 4AKCA 4AK4A 4R6OA 5JM1A 3LLYA 3WOCA 3LL2A 3LM1A 3R50A 4PIFA 1W99A 1VBOA 3R51A 1XXQA 4MQ0A 1UGYA 1DLCA 2HYQA 5EXGA 4QX1A 4D8MA 2HYRA 1J4UA 4QX0A 1J4TA
chains in the Genus database with same CATH topology

4D8MA 2QP2A 3TOWA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2QP2 A;  3TOW A; 
#chains in the Genus database with same CATH topology
 4ARX A;  2C9K A;  1C3K A;  4PIK A;  3LL0 A;  5AV7 A;  4W8J A;  3EB7 A;  4QX3 A;  3WOB A;  1UH1 A;  1CIY A;  1XEZ A;  1X1V A;  3LLZ A;  1C3M A;  4AKB A;  1JAC A;  4DDN A;  3R52 A;  3VZF A;  2JZ4 A;  5J4T A;  4AKD A;  1TP8 A;  1WS5 C;  1TOQ A;  1WS5 A;  3VZG A;  5J4X A;  1UGW C;  2GUC A;  3VY7 A;  4QX2 A;  1UGW A;  3LL1 A;  4PIU A;  2GUD A;  1PXD A;  2BN0 A;  2GUE A;  2GTY A;  4R6P A;  5J51 A;  1I5P A;  1VMO A;  5J50 A;  1C3N A;  3TOW A;  1VBP A;  3AQG A;  4MOA A;  4GX7 A;  1JOT A;  2BMZ A;  3VZE A;  3P8S A;  1XXR A;  1ZGS A;  2GUX A;  1UH0 A;  1WS4 C;  3O44 A;  4ARY A;  5BN6 E;  4WOG A;  1OUW A;  3LKY A;  1M26 A;  1UGX A;  3MIU A;  1UGY C;  4R6Q A;  3VY6 A;  3MIV A;  1KU8 A;  2QP2 A;  4R6N A;  2NUO A;  1KUJ A;  4PIT A;  1J4S A;  2NU5 A;  3MIT A;  2BMY A;  4R6R A;  1WS4 A;  1ZGR A;  3APA A;  1JI6 A;  4AKC A;  4AK4 A;  4R6O A;  5JM1 A;  3LLY A;  3WOC A;  3LL2 A;  3LM1 A;  3R50 A;  4PIF A;  1W99 A;  1VBO A;  3R51 A;  1XXQ A;  4MQ0 A;  1UGY A;  1DLC A;  2HYQ A;  5EXG A;  4QX1 A;  4D8M A;  2HYR A;  1J4U A;  4QX0 A;  1J4T A; 
#chains in the Genus database with same CATH homology
 4D8M A;  2QP2 A;  3TOW A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2QP2A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

pfam database annotations