2QP2A

Structure of a macpf/perforin-like protein
Total Genus 155
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
155
sequence length
502
structure length
498
Chain Sequence
KSLEQENSERDVEIRDRNYFRKLSLFDDTVIAGAEMIGTSYDVFGKYCNVGSCMNSLFDERKINASEDNFKKVTILGKTLKVPYYIDCYSVGDLKYTNASGESIESYQSNISSKSRIKGNYLFFSASLKVDFDTDSLTDFENAFSRIQYTYDLYILKSSAEALKEFLKESVKTALDKADTEEDMNDLFNTWGSHFLSGVVMGGCAQYSSSTNKYTSNLTNSFDVVAAASFAGFIGLSARTGNSFMEDIKKFRSASNIKTHAIGGDLSRFDPFGGATSADQPSAEEIAAAKKAFEDWKASVPNAPELVNFADSNPLTGIWELCSDRTQKAKLKKHFETVWAPAESAKRRVHADYIDEIIIGINNTNTPPEGYIGLKSTKDENLNSKGNICLFMHKAKYDPNIDNKDCITELKFITVRDKSPEGDWVKIPQDIYISPNQYLYLCYLPAKYSAEKAIKDIQLLCSSMILPYGYNDVLDERGERANATEDDNVHYLIYSAGW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title A common fold mediates vertebrate defense and bacterial attack
pubmed doi rcsb
molecule tags Unknown function
source organism Photorhabdus luminescens subsp. laumondii
molecule keywords Unknown protein
total genus 155
structure length 498
sequence length 502
ec nomenclature
pdb deposition date 2007-07-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01823 MACPF MAC/Perforin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.50 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Vitelline Membrane Outer Layer Protein I, subunit A 2qp2A02
2QP2A 3TOWA
chains in the Genus database with same CATH superfamily
3R51A 3VY7A 1UH1A 3VZFA 1WS4A 4WOGA 1XXQA 3LL2A 4QX1A 1C3MA 1KUJA 3LL0A 1TOQA 1UH0A 1J4UA 1UGYA 1VMOA 1C3NA 5J4XA 2HYQA 3VY6A 3LLYA 1XEZA 1VBPA 4AKBA 1UGXA 2BMYA 5J4TA 1X1VA 4MOAA 3MIVA 1W99A 1XXRA 4QX2A 3LLZA 1UGYC 1DLCA 3R52A 1TP8A 2GTYA 2JZ4A 1CIYA 1OUWA 4R6PA 2QP2A 4ARYA 2GUDA 4MQ0A 3MIUA 5AV7A 1C3KA 4QX3A 4QX0A 3O44A 3LKYA 4PITA 3WOCA 1VBOA 4R6QA 1J4TA 5BN6E 3LM1A 3EB7A 1UGWA 1J4SA 2GUXA 3TOWA 4ARXA 4R6NA 3P8SA 4AKDA 3WOBA 3APAA 1UGWC 1JOTA 2C9KA 1WS5A 3LL1A 3R50A 2HYRA 1KU8A 4PIFA 4D8MA 2GUCA 2GUEA 2NU5A 4DDNA 1ZGSA 4PIKA 5EXGA 3VZGA 1WS5C 1JACA 4AKCA 1M26A 4R6RA 1PXDA 4GX7A 5JM1A 4W8JA 4PIUA 5J50A 3AQGA 1WS4C 1I5PA 4R6OA 5J51A 2NUOA 1ZGRA 3VZEA 2BN0A 3MITA 4AK4A 1JI6A 2BMZA
chains in the Genus database with same CATH topology
2QP2A 3TOWA 4D8MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QP2 A;  3TOW A; 
#chains in the Genus database with same CATH topology
 3R51 A;  3VY7 A;  1UH1 A;  3VZF A;  1WS4 A;  4WOG A;  1XXQ A;  3LL2 A;  4QX1 A;  1C3M A;  1KUJ A;  3LL0 A;  1TOQ A;  1UH0 A;  1J4U A;  1UGY A;  1VMO A;  1C3N A;  5J4X A;  2HYQ A;  3VY6 A;  3LLY A;  1XEZ A;  1VBP A;  4AKB A;  1UGX A;  2BMY A;  5J4T A;  1X1V A;  4MOA A;  3MIV A;  1W99 A;  1XXR A;  4QX2 A;  3LLZ A;  1UGY C;  1DLC A;  3R52 A;  1TP8 A;  2GTY A;  2JZ4 A;  1CIY A;  1OUW A;  4R6P A;  2QP2 A;  4ARY A;  2GUD A;  4MQ0 A;  3MIU A;  5AV7 A;  1C3K A;  4QX3 A;  4QX0 A;  3O44 A;  3LKY A;  4PIT A;  3WOC A;  1VBO A;  4R6Q A;  1J4T A;  5BN6 E;  3LM1 A;  3EB7 A;  1UGW A;  1J4S A;  2GUX A;  3TOW A;  4ARX A;  4R6N A;  3P8S A;  4AKD A;  3WOB A;  3APA A;  1UGW C;  1JOT A;  2C9K A;  1WS5 A;  3LL1 A;  3R50 A;  2HYR A;  1KU8 A;  4PIF A;  4D8M A;  2GUC A;  2GUE A;  2NU5 A;  4DDN A;  1ZGS A;  4PIK A;  5EXG A;  3VZG A;  1WS5 C;  1JAC A;  4AKC A;  1M26 A;  4R6R A;  1PXD A;  4GX7 A;  5JM1 A;  4W8J A;  4PIU A;  5J50 A;  3AQG A;  1WS4 C;  1I5P A;  4R6O A;  5J51 A;  2NUO A;  1ZGR A;  3VZE A;  2BN0 A;  3MIT A;  4AK4 A;  1JI6 A;  2BMZ A; 
#chains in the Genus database with same CATH homology
 2QP2 A;  3TOW A;  4D8M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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