2V2UA

Structure of mouse gammac-crystallin
Total Genus 43

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
173
structure length
173
Chain Sequence
GKITFFEDRSFQGRCYECSSDCPNLQTYFSRCNSVRVDSGCWMLYERPNYQGHQYFLRRGEYPDYQQWMGFSDSIRSCRLIPHAGSHRMRLYEKEDHKGVMMELSEDCSCIQDRFHLSEVRSLQVLEGCWVLYEMPNYRGRQYLLRPQEYRRFQDWGSVDAKAGSLRRVVDLY

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYTIV1 (8-11)S3 (34-39)O1 (18-22)S2 (12-18)TIV3 (22-25)S7 (77-81)TIV4 (47-50)TI2 (26-29)TI1 (25-28)S4 (41-47)S5 (51-57)S6 (60-62)3H1 (65-68)S10 (122-127)TVIII1 (84-87)S8 (88-94)S9 (98-104)TII1 (94-97)S14 (165-168)TIV6 (108-111)TIV8 (135-138)3H2 (111-113)S11 (130-135)S12 (139-145)S13 (148-150)3H3 (153-156)S1 (2-8)Updating...
connected with : NaN
molecule tags Structural protein
source organism Mus musculus
publication title Evolutionary Adaptation of Human and Mouse Eye Lens Gammac-Crystallins for Solubility and Stability: Fine-Tuning of Molecular Dipoles.
pubmed doi rcsb
molecule keywords GAMMA CRYSTALLIN C
total genus 43
structure length 173
sequence length 173
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00030 Crystall Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 2v2uA02
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 2v2uA01
4W9AA 1A7HA 1DSLA 1OKIA 1ZWMA 1HK0X 2JDFA 1YTQA 3I9HA 3QK3A 3ENTA 4GCRA 4IAUA 2M3CA 4EL6A 1GAMA 1AG4A 2M3TA 2BB2A 1ZGTA 1NPSA 1HDFA 1A45A 2K1XA 2NBRA 3IAJA 4GR7A 2B1OA 4PSRA 4W9BA 1E7NA 1I5IA 1ZIRA 3HZ2A 2K1WA 3SNYA 4AKAA 3HZBA 1H4AX 3ENUA 1ZIQA 1AMMA 1BLBA 4JGFA 4FD9A 1A5DA 2M3UA 4PSPA 1M8UA 1PRSA 2BV2A 3SNZA 1ELPA 3SO1A 5HT8A 3SO0A 1ZWOA 2JDGA 4NI3A 5HT9A 2DADA 2V2UA 1GCSA 2KP5A 1PRRA 1BD7A 1YHPA 3CW3A 1HA4A 2KFBA 2A5MA 3LWKA 2G98A 1ZIEA
chains in the Genus database with same CATH superfamily
3QK3A 1GAMA 1C01A 1A45A 1I5IA 1F53A 1M8UA 1PRSA 3SO1A 1ZWOA 2KP5A 2KFBA 1DSLA 1OKIA 1ZWMA 2JDFA 2M3CA 4EL6A 1WKTA 2K1XA 3IAJA 1ZIRA 3SNYA 3HZBA 3ENUA 3UJZA 1ZIQA 4PSPA 2V2UA 1GCSA 2G98A 1A7HA 1HK0X 4IAUA 2M3TA 2BB2A 1NPSA 1HDFA 3HZ2A 2K1WA 4AKAA 1H4AX 1AMMA 1BLBA 1BHUA 2M3UA 2BV2A 4NI3A 5HT9A 2DADA 1PRRA 1YHPA 3CW3A 1HA4A 2A5MA 4W9AA 1YTQA 3I9HA 3ENTA 4GCRA 1G6EA 1AG4A 1ZGTA 4GR7A 4PSRA 2NBRA 4W9BA 2B1OA 1E7NA 4JGFA 1A5DA 3SNZA 1ELPA 5HT8A 3SO0A 2JDGA 1BD7A 3LWKA 4FD9A 1ZIEA 1GH5A
chains in the Genus database with same CATH topology
4W9AA 1A7HA 1DSLA 1OKIA 1ZWMA 1HK0X 2JDFA 1YTQA 3I9HA 3QK3A 3ENTA 4GCRA 4IAUA 2M3CA 4EL6A 1GAMA 1AG4A 2M3TA 2BB2A 1ZGTA 1NPSA 1HDFA 1A45A 2K1XA 2NBRA 3IAJA 4GR7A 2B1OA 4PSRA 4W9BA 1E7NA 1I5IA 1ZIRA 3HZ2A 2K1WA 3SNYA 4AKAA 3HZBA 1H4AX 3ENUA 1ZIQA 1AMMA 1BLBA 4JGFA 4FD9A 1A5DA 2M3UA 4PSPA 1M8UA 1PRSA 2BV2A 3SNZA 1ELPA 3SO1A 5HT8A 3SO0A 1ZWOA 2JDGA 4NI3A 5HT9A 2DADA 2V2UA 1GCSA 2KP5A 1PRRA 1BD7A 1YHPA 3CW3A 1HA4A 2KFBA 2A5MA 3LWKA 2G98A 1ZIEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4W9A A;  1A7H A;  1DSL A;  1OKI A;  1ZWM A;  1HK0 X;  2JDF A;  1YTQ A;  3I9H A;  3QK3 A;  3ENT A;  4GCR A;  4IAU A;  2M3C A;  4EL6 A;  1GAM A;  1AG4 A;  2M3T A;  2BB2 A;  1ZGT A;  1NPS A;  1HDF A;  1A45 A;  2K1X A;  2NBR A;  3IAJ A;  4GR7 A;  2B1O A;  4PSR A;  4W9B A;  1E7N A;  1I5I A;  1ZIR A;  3HZ2 A;  2K1W A;  3SNY A;  4AKA A;  3HZB A;  1H4A X;  3ENU A;  1ZIQ A;  1AMM A;  1BLB A;  4JGF A;  4FD9 A;  1A5D A;  2M3U A;  4PSP A;  1M8U A;  1PRS A;  2BV2 A;  3SNZ A;  1ELP A;  3SO1 A;  5HT8 A;  3SO0 A;  1ZWO A;  2JDG A;  4NI3 A;  5HT9 A;  2DAD A;  2V2U A;  1GCS A;  2KP5 A;  1PRR A;  1BD7 A;  1YHP A;  3CW3 A;  1HA4 A;  2KFB A;  2A5M A;  3LWK A;  2G98 A;  1ZIE A; 
#chains in the Genus database with same CATH topology
 3QK3 A;  1GAM A;  1C01 A;  1A45 A;  1I5I A;  1F53 A;  1M8U A;  1PRS A;  3SO1 A;  1ZWO A;  2KP5 A;  2KFB A;  1DSL A;  1OKI A;  1ZWM A;  2JDF A;  2M3C A;  4EL6 A;  1WKT A;  2K1X A;  3IAJ A;  1ZIR A;  3SNY A;  3HZB A;  3ENU A;  3UJZ A;  1ZIQ A;  4PSP A;  2V2U A;  1GCS A;  2G98 A;  1A7H A;  1HK0 X;  4IAU A;  2M3T A;  2BB2 A;  1NPS A;  1HDF A;  3HZ2 A;  2K1W A;  4AKA A;  1H4A X;  1AMM A;  1BLB A;  1BHU A;  2M3U A;  2BV2 A;  4NI3 A;  5HT9 A;  2DAD A;  1PRR A;  1YHP A;  3CW3 A;  1HA4 A;  2A5M A;  4W9A A;  1YTQ A;  3I9H A;  3ENT A;  4GCR A;  1G6E A;  1AG4 A;  1ZGT A;  4GR7 A;  4PSR A;  2NBR A;  4W9B A;  2B1O A;  1E7N A;  4JGF A;  1A5D A;  3SNZ A;  1ELP A;  5HT8 A;  3SO0 A;  2JDG A;  1BD7 A;  3LWK A;  4FD9 A;  1ZIE A;  1GH5 A; 
#chains in the Genus database with same CATH homology
 4W9A A;  1A7H A;  1DSL A;  1OKI A;  1ZWM A;  1HK0 X;  2JDF A;  1YTQ A;  3I9H A;  3QK3 A;  3ENT A;  4GCR A;  4IAU A;  2M3C A;  4EL6 A;  1GAM A;  1AG4 A;  2M3T A;  2BB2 A;  1ZGT A;  1NPS A;  1HDF A;  1A45 A;  2K1X A;  2NBR A;  3IAJ A;  4GR7 A;  2B1O A;  4PSR A;  4W9B A;  1E7N A;  1I5I A;  1ZIR A;  3HZ2 A;  2K1W A;  3SNY A;  4AKA A;  3HZB A;  1H4A X;  3ENU A;  1ZIQ A;  1AMM A;  1BLB A;  4JGF A;  4FD9 A;  1A5D A;  2M3U A;  4PSP A;  1M8U A;  1PRS A;  2BV2 A;  3SNZ A;  1ELP A;  3SO1 A;  5HT8 A;  3SO0 A;  1ZWO A;  2JDG A;  4NI3 A;  5HT9 A;  2DAD A;  2V2U A;  1GCS A;  2KP5 A;  1PRR A;  1BD7 A;  1YHP A;  3CW3 A;  1HA4 A;  2KFB A;  2A5M A;  3LWK A;  2G98 A;  1ZIE A; 
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