2V2UA

Structure of mouse gammac-crystallin
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
173
structure length
173
Chain Sequence
GKITFFEDRSFQGRCYECSSDCPNLQTYFSRCNSVRVDSGCWMLYERPNYQGHQYFLRRGEYPDYQQWMGFSDSIRSCRLIPHAGSHRMRLYEKEDHKGVMMELSEDCSCIQDRFHLSEVRSLQVLEGCWVLYEMPNYRGRQYLLRPQEYRRFQDWGSVDAKAGSLRRVVDLY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
source organism Mus musculus
publication title Evolutionary Adaptation of Human and Mouse Eye Lens Gammac-Crystallins for Solubility and Stability: Fine-Tuning of Molecular Dipoles.
pubmed doi rcsb
molecule keywords GAMMA CRYSTALLIN C
total genus 43
structure length 173
sequence length 173
chains with identical sequence B
ec nomenclature
pdb deposition date 2007-06-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00030 Crystall Beta/Gamma crystallin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 2v2uA02
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 2v2uA01
4PSPA 1GAMA 1AG4A 2JDFA 3HZBA 4NI3A 3SNZA 1E7NA 4PSRA 2DADA 3SO0A 1A45A 1H4AX 2BV2A 2KFBA 4W9AA 1HA4A 3CW3A 1NPSA 3ENUA 3ENTA 3HZ2A 4EL6A 2G98A 1DSLA 1YTQA 1ZIRA 2M3TA 2KP5A 2JDGA 4AKAA 1ZWOA 1ZIEA 3QK3A 3SNYA 1YHPA 4GR7A 5HT8A 3LWKA 4W9BA 3I9HA 5HT9A 1OKIA 1HDFA 1A7HA 3SO1A 1GCSA 2NBRA 1ELPA 1A5DA 1BLBA 1ZWMA 2B1OA 1ZGTA 3IAJA 4GCRA 1HK0X 2M3CA 2A5MA 4FD9A 2BB2A 1BD7A 1M8UA 1PRSA 1ZIQA 1AMMA 2K1WA 4IAUA 4JGFA 2M3UA 1PRRA 2K1XA 1I5IA 2V2UA
chains in the Genus database with same CATH superfamily
3HZBA 2JDFA 1E7NA 4PSRA 2DADA 1NPSA 2G98A 1YHPA 4GR7A 5HT8A 1HDFA 1ZGTA 2BB2A 2M3UA 1ZWMA 2K1XA 3SO0A 4NI3A 4W9AA 1H4AX 1G6EA 1BHUA 1GH5A 3ENUA 3ENTA 3HZ2A 1DSLA 1YTQA 3SNYA 4W9BA 5HT9A 2NBRA 1ELPA 3IAJA 2M3CA 4FD9A 1M8UA 1AMMA 2K1WA 4IAUA 1PRRA 3LWKA 1AG4A 3SNZA 1A45A 2M3TA 2KP5A 2JDGA 4AKAA 1WKTA 1ZWOA 1C01A 1OKIA 1BD7A 1ZIQA 3SO1A 4GCRA 2V2UA 4PSPA 1GAMA 1F53A 2KFBA 2BV2A 1HA4A 3CW3A 4EL6A 1ZIRA 1ZIEA 3QK3A 3I9HA 1A7HA 1GCSA 1A5DA 1BLBA 2B1OA 1HK0X 2A5MA 3UJZA 1PRSA 4JGFA 1I5IA
chains in the Genus database with same CATH topology
4PSPA 1GAMA 1AG4A 2JDFA 3HZBA 4NI3A 3SNZA 1E7NA 4PSRA 2DADA 3SO0A 1A45A 1H4AX 2BV2A 2KFBA 4W9AA 1HA4A 3CW3A 1NPSA 3ENUA 3ENTA 3HZ2A 4EL6A 2G98A 1DSLA 1YTQA 1ZIRA 2M3TA 2KP5A 2JDGA 4AKAA 1ZWOA 1ZIEA 3QK3A 3SNYA 1YHPA 4GR7A 5HT8A 3LWKA 4W9BA 3I9HA 5HT9A 1OKIA 1HDFA 1A7HA 3SO1A 1GCSA 2NBRA 1ELPA 1A5DA 1BLBA 1ZWMA 2B1OA 1ZGTA 3IAJA 4GCRA 1HK0X 2M3CA 2A5MA 4FD9A 2BB2A 1BD7A 1M8UA 1PRSA 1ZIQA 1AMMA 2K1WA 4IAUA 4JGFA 2M3UA 1PRRA 2K1XA 1I5IA 2V2UA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PSP A;  1GAM A;  1AG4 A;  2JDF A;  3HZB A;  4NI3 A;  3SNZ A;  1E7N A;  4PSR A;  2DAD A;  3SO0 A;  1A45 A;  1H4A X;  2BV2 A;  2KFB A;  4W9A A;  1HA4 A;  3CW3 A;  1NPS A;  3ENU A;  3ENT A;  3HZ2 A;  4EL6 A;  2G98 A;  1DSL A;  1YTQ A;  1ZIR A;  2M3T A;  2KP5 A;  2JDG A;  4AKA A;  1ZWO A;  1ZIE A;  3QK3 A;  3SNY A;  1YHP A;  4GR7 A;  5HT8 A;  3LWK A;  4W9B A;  3I9H A;  5HT9 A;  1OKI A;  1HDF A;  1A7H A;  3SO1 A;  1GCS A;  2NBR A;  1ELP A;  1A5D A;  1BLB A;  1ZWM A;  2B1O A;  1ZGT A;  3IAJ A;  4GCR A;  1HK0 X;  2M3C A;  2A5M A;  4FD9 A;  2BB2 A;  1BD7 A;  1M8U A;  1PRS A;  1ZIQ A;  1AMM A;  2K1W A;  4IAU A;  4JGF A;  2M3U A;  1PRR A;  2K1X A;  1I5I A;  2V2U A; 
#chains in the Genus database with same CATH topology
 3HZB A;  2JDF A;  1E7N A;  4PSR A;  2DAD A;  1NPS A;  2G98 A;  1YHP A;  4GR7 A;  5HT8 A;  1HDF A;  1ZGT A;  2BB2 A;  2M3U A;  1ZWM A;  2K1X A;  3SO0 A;  4NI3 A;  4W9A A;  1H4A X;  1G6E A;  1BHU A;  1GH5 A;  3ENU A;  3ENT A;  3HZ2 A;  1DSL A;  1YTQ A;  3SNY A;  4W9B A;  5HT9 A;  2NBR A;  1ELP A;  3IAJ A;  2M3C A;  4FD9 A;  1M8U A;  1AMM A;  2K1W A;  4IAU A;  1PRR A;  3LWK A;  1AG4 A;  3SNZ A;  1A45 A;  2M3T A;  2KP5 A;  2JDG A;  4AKA A;  1WKT A;  1ZWO A;  1C01 A;  1OKI A;  1BD7 A;  1ZIQ A;  3SO1 A;  4GCR A;  2V2U A;  4PSP A;  1GAM A;  1F53 A;  2KFB A;  2BV2 A;  1HA4 A;  3CW3 A;  4EL6 A;  1ZIR A;  1ZIE A;  3QK3 A;  3I9H A;  1A7H A;  1GCS A;  1A5D A;  1BLB A;  2B1O A;  1HK0 X;  2A5M A;  3UJZ A;  1PRS A;  4JGF A;  1I5I A; 
#chains in the Genus database with same CATH homology
 4PSP A;  1GAM A;  1AG4 A;  2JDF A;  3HZB A;  4NI3 A;  3SNZ A;  1E7N A;  4PSR A;  2DAD A;  3SO0 A;  1A45 A;  1H4A X;  2BV2 A;  2KFB A;  4W9A A;  1HA4 A;  3CW3 A;  1NPS A;  3ENU A;  3ENT A;  3HZ2 A;  4EL6 A;  2G98 A;  1DSL A;  1YTQ A;  1ZIR A;  2M3T A;  2KP5 A;  2JDG A;  4AKA A;  1ZWO A;  1ZIE A;  3QK3 A;  3SNY A;  1YHP A;  4GR7 A;  5HT8 A;  3LWK A;  4W9B A;  3I9H A;  5HT9 A;  1OKI A;  1HDF A;  1A7H A;  3SO1 A;  1GCS A;  2NBR A;  1ELP A;  1A5D A;  1BLB A;  1ZWM A;  2B1O A;  1ZGT A;  3IAJ A;  4GCR A;  1HK0 X;  2M3C A;  2A5M A;  4FD9 A;  2BB2 A;  1BD7 A;  1M8U A;  1PRS A;  1ZIQ A;  1AMM A;  2K1W A;  4IAU A;  4JGF A;  2M3U A;  1PRR A;  2K1X A;  1I5I A;  2V2U A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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