2WQT | Genus

Total Genus 80

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	80
sequence length	262
structure length	262
Chain Sequence	LMTKHTLEQLAADLRRAAEQGEAIAPLRDLIGIDNAEAAYAIQHINVQHDVAQGRRVVGRKVGLTHPKVQQQLGVDQPDFGTLFADMCYGDNEIIPFSRVLQPRIEAEIALVLNRDLPATDITFDELYNAIEWVLPALEVVGSRIRDWSIQFVDTVADNASCGVYVIGGPAQRPAGLDLKNCAMKMTRNNEEVSSGRGSECLGHPLNAAVWLARKMASLGEPLRTGDIILTGALGPMVAVNAGDRFEAHIEGIGSVAATFSS

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 262 atoms

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262 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lyase
source organism	Escherichia coli
publication title	Assembly of a 20Nm Protein Cage by Escherichia Coli 2-Hydroxypentadienoic Acid Hydratase (Mhpd). pubmed doi rcsb
molecule keywords	2-KETO-4-PENTENOATE HYDRATASE
total genus	80
structure length	262
sequence length	262
chains with identical sequence	B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T
ec nomenclature	ec 4.2.1.80: 2-oxopent-4-enoate hydratase.
pdb deposition date	2009-08-27

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01557	FAA_hydrolase	Fumarylacetoacetate (FAA) hydrolase family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase; domain 2	Fumarylacetoacetase-like, C-terminal domain	2wqtA00

2Q1DX 1QCOA 3S52A 2WQTA 2EB4A 1WZOA 2Q19X 1SV6A 2Q1AX 2Q1CX 3R6OA 1QQJA 4PFZA 3QDFA 5D2GA 2HZYA 2EB5A 2EB6A 4DBFA 5D2KA 3V77A 1NKQA 1SAWA 4DBHA 2DFUA 4QKUA 3BQBA 4MAQA 5D2JA 5D2IA 5D2HA 1NR9A 5D2FA 1GTTA 1HYOA 2Q18X 3RR6A 1I7OA 3LZKA 1QCNA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2Q1D X;  1QCO A;  3S52 A;  2WQT A;  2EB4 A;  1WZO A;  2Q19 X;  1SV6 A;  2Q1A X;  2Q1C X;  3R6O A;  1QQJ A;  4PFZ A;  3QDF A;  5D2G A;  2HZY A;  2EB5 A;  2EB6 A;  4DBF A;  5D2K A;  3V77 A;  1NKQ A;  1SAW A;  4DBH A;  2DFU A;  4QKU A;  3BQB A;  4MAQ A;  5D2J A;  5D2I A;  5D2H A;  1NR9 A;  5D2F A;  1GTT A;  1HYO A;  2Q18 X;  3RR6 A;  1I7O A;  3LZK A;  1QCN A; 
#chains in the Genus database with same CATH topology
 2Q1D X;  1QCO A;  3S52 A;  2WQT A;  2EB4 A;  1WZO A;  2Q19 X;  1SV6 A;  2Q1A X;  2Q1C X;  3R6O A;  1QQJ A;  4PFZ A;  3QDF A;  5D2G A;  2HZY A;  2EB5 A;  2EB6 A;  4DBF A;  5D2K A;  3V77 A;  1NKQ A;  1SAW A;  4DBH A;  2DFU A;  4QKU A;  3BQB A;  4MAQ A;  5D2J A;  5D2I A;  5D2H A;  1NR9 A;  5D2F A;  1GTT A;  1HYO A;  2Q18 X;  3RR6 A;  1I7O A;  3LZK A;  1QCN A; 
#chains in the Genus database with same CATH homology
 2Q1D X;  1QCO A;  3S52 A;  2WQT A;  2EB4 A;  1WZO A;  2Q19 X;  1SV6 A;  2Q1A X;  2Q1C X;  3R6O A;  1QQJ A;  4PFZ A;  3QDF A;  5D2G A;  2HZY A;  2EB5 A;  2EB6 A;  4DBF A;  5D2K A;  3V77 A;  1NKQ A;  1SAW A;  4DBH A;  2DFU A;  4QKU A;  3BQB A;  4MAQ A;  5D2J A;  5D2I A;  5D2H A;  1NR9 A;  5D2F A;  1GTT A;  1HYO A;  2Q18 X;  3RR6 A;  1I7O A;  3LZK A;  1QCN A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2WQTA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations