2Y3WA

N-terminal head domain and beginning of coiled coil domain of danio rerio sas-6
Total Genus 47
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
47
sequence length
178
structure length
172
Chain Sequence
PHMTELLFNKRLQVLVKSKDTDERRSVIRVSIELQLPKDLVVRLTDDTDLYFLYNLIISEEDFQSLKVQQGLLIDFTSFPQKFIDLLEQCICEQDKENPRFLLQLSSSSSAFDHSPSNLNIVETNADKHLTHLSLKLLPGSDTDIKKYLASCLSSVKEEKQQLQQKLRKTEE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of SAS-6 suggest its organization in centrioles.
pubmed doi rcsb
molecule tags Structural protein
source organism Danio rerio
molecule keywords SPINDLE ASSEMBLY ABNORMAL PROTEIN 6 HOMOLOG
total genus 47
structure length 172
sequence length 178
chains with identical sequence B, C
ec nomenclature
pdb deposition date 2010-12-27

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16531 SAS-6_N Centriolar protein SAS N-terminal
A PF18594 Sas6_CC Sas6/XLF/XRCC4 coiled-coil domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.210.20 Mainly Beta Beta Complex Dna Repair Protein Xrcc4; Chain: A, domain 1 Dna Repair Protein Xrcc4; Chain: A, domain 1 2y3wA00
2Y3WA 4GFAA 3Q0YA 2Y3VA 4GFCA 4CKMA 4GEXA 4CKNA 4CKPA 3PYIA 4GEUA 3Q0XA 4G79A
chains in the Genus database with same CATH superfamily
3MUDA 3Q0YA 5CJ0A 3RWRD 4CKMA 4GEUA 3II6A 2QM4A 3SR2C 4GFCA 4GEXA 5CHXA 4XA4A 3SR2A 4GFAA 2Y3VA 3PYIA 1FU1A 4G79A 4CKNA 2Y3WA 5CJ4A 2R9AA 1IK9A 4CKPA 3Q0XA 3RWRA
chains in the Genus database with same CATH topology
2Y3WA 4GFAA 3Q0YA 2Y3VA 4GFCA 4CKMA 4GEXA 4CKNA 4CKPA 3PYIA 4GEUA 3Q0XA 4G79A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y3W A;  4GFA A;  3Q0Y A;  2Y3V A;  4GFC A;  4CKM A;  4GEX A;  4CKN A;  4CKP A;  3PYI A;  4GEU A;  3Q0X A;  4G79 A; 
#chains in the Genus database with same CATH topology
 3MUD A;  3Q0Y A;  5CJ0 A;  3RWR D;  4CKM A;  4GEU A;  3II6 A;  2QM4 A;  3SR2 C;  4GFC A;  4GEX A;  5CHX A;  4XA4 A;  3SR2 A;  4GFA A;  2Y3V A;  3PYI A;  1FU1 A;  4G79 A;  4CKN A;  2Y3W A;  5CJ4 A;  2R9A A;  1IK9 A;  4CKP A;  3Q0X A;  3RWR A; 
#chains in the Genus database with same CATH homology
 2Y3W A;  4GFA A;  3Q0Y A;  2Y3V A;  4GFC A;  4CKM A;  4GEX A;  4CKN A;  4CKP A;  3PYI A;  4GEU A;  3Q0X A;  4G79 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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