2TRC | Genus

Total Genus 20

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	20
sequence length	68
structure length	68
Chain Sequence	MPVINIEDLTEKDKLKMEVDQLKKEVTLERMLVSKCCEEFRDYVEERSGEDPLVKGIPEDKNPFKELK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 68 atoms

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68 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

molecule tags	Complex (transducer/transduction)
source organism	Rattus norvegicus
publication title	Crystal structure at 2.4 angstroms resolution of the complex of transducin betagamma and its regulator, phosducin. pubmed doi rcsb
molecule keywords	TRANSDUCIN
total genus	20
structure length	68
sequence length	68
ec nomenclature
pdb deposition date	1997-01-06

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.260.10	Few Secondary Structures	Irregular	G Protein Gi Gamma 2	Transducin (heterotrimeric G protein), gamma chain	2trcG00

4MK0G 3PVUG 5HE3G 1B9YB 1GG2G 5HE2G 1A0RG 3AH8G 3SN6G 1GP2G 5HE1G 3KRWG 1OMWG 4PNKG 1TBGE 1XHMB 3CIKG 3PSCG 2PBIA 2TRCG 3PVWG 5HE0G 3V5WG 5TDHG 3KRXG 2BCJG 1B9XB 4KFMG 5KDOG 1GOTG
chains in the Genus database with same CATH superfamily

4MK0G 3PVUG 5HE3G 1B9YB 1GG2G 5HE2G 1A0RG 1IOJA 3AH8G 3SN6G 1GP2G 5HE1G 3KRWG 1OMWG 1HFES 4PNKG 1TBGE 1XHMB 3CIKG 3PSCG 2PBIA 2TRCG 3PVWG 5HE0G 3V5WG 5TDHG 3KRXG 2BCJG 1B9XB 4KFMG 5KDOG 1GOTG
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4MK0 G;  3PVU G;  5HE3 G;  1B9Y B;  1GG2 G;  5HE2 G;  1A0R G;  3AH8 G;  3SN6 G;  1GP2 G;  5HE1 G;  3KRW G;  1OMW G;  4PNK G;  1TBG E;  1XHM B;  3CIK G;  3PSC G;  2PBI A;  2TRC G;  3PVW G;  5HE0 G;  3V5W G;  5TDH G;  3KRX G;  2BCJ G;  1B9X B;  4KFM G;  5KDO G;  1GOT G; 
#chains in the Genus database with same CATH topology
 4MK0 G;  3PVU G;  5HE3 G;  1B9Y B;  1GG2 G;  5HE2 G;  1A0R G;  1IOJ A;  3AH8 G;  3SN6 G;  1GP2 G;  5HE1 G;  3KRW G;  1OMW G;  1HFE S;  4PNK G;  1TBG E;  1XHM B;  3CIK G;  3PSC G;  2PBI A;  2TRC G;  3PVW G;  5HE0 G;  3V5W G;  5TDH G;  3KRX G;  2BCJ G;  1B9X B;  4KFM G;  5KDO G;  1GOT G; 
#chains in the Genus database with same CATH homology
 4MK0 G;  3PVU G;  5HE3 G;  1B9Y B;  1GG2 G;  5HE2 G;  1A0R G;  3AH8 G;  3SN6 G;  1GP2 G;  5HE1 G;  3KRW G;  1OMW G;  4PNK G;  1TBG E;  1XHM B;  3CIK G;  3PSC G;  2PBI A;  2TRC G;  3PVW G;  5HE0 G;  3V5W G;  5TDH G;  3KRX G;  2BCJ G;  1B9X B;  4KFM G;  5KDO G;  1GOT G;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

2TRCG

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization