3APA | Genus

Total Genus 29

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	29
sequence length	138
structure length	138
Chain Sequence	RSSSYSGEYGSGGGKRFSHSGNQLDGPITALRVRVNTYYIVGLQVRYGKVWSDYVGGRNGDLEEIFLHPGESVIQVSGKYKWYLKKLVFVTDKGRYLSFGKDSGTSFNAVPLHPNTVLRFISGRSGSLIDAIGLHWDV

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
source organism	Homo sapiens
publication title	Crystal structures of human secretory proteins ZG16p and ZG16b reveal a Jacalin-related beta-prism fold pubmed doi rcsb
molecule keywords	Zymogen granule membrane protein 16
total genus	29
structure length	138
sequence length	138
ec nomenclature
pdb deposition date	2010-10-13

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	3apaA00

1VBOA 2GTYA 3WOBA 5JM1A 1TP8A 3LL2A 1C3MA 4GX7A 3MITA 1UH0A 1TOQA 1JOTA 4R6OA 3VZEA 1XEZA 1PXDA 3LM1A 3WOCA 5J51A 4PIUA 1WS5A 3MIVA 4R6RA 4R6PA 2NU5A 2GUDA 2BN0A 3O44A 5EXGA 5BN6E 5J50A 1UGWA 1ZGSA 3P8SA 2BMYA 4PIKA 1WS5C 1J4SA 1UGYA 3VZFA 4AKCA 1XXQA 3VZGA 1J4UA 2NUOA 3VY6A 2HYQA 1WS4A 5J4TA 1UGXA 3APAA 1KUJA 2GUEA 2GUXA 1UGWC 2BMZA 3R51A 1X1VA 4R6QA 1XXRA 1C3NA 4AKBA 3LKYA 3R52A 4WOGA 4AK4A 1JACA 2HYRA 3LLZA 2JZ4A 4PIFA 1C3KA 1OUWA 1M26A 1UH1A 5AV7A 4AKDA 3LL0A 1UGYC 1VBPA 1KU8A 1ZGRA 4R6NA 3MIUA 4PITA 5J4XA 1J4TA 4DDNA 2GUCA 1WS4C 4MQ0A 3R50A 3LL1A 3AQGA 3LLYA 3VY7A
chains in the Genus database with same CATH superfamily

4QX2A 1VBOA 2GTYA 3WOBA 5JM1A 1TP8A 3LL2A 1I5PA 1C3MA 4GX7A 3MITA 1UH0A 4QX0A 1TOQA 1JOTA 4R6OA 3VZEA 1XEZA 1PXDA 3LM1A 3WOCA 5J51A 4PIUA 1JI6A 1WS5A 3MIVA 4D8MA 4R6RA 4R6PA 2NU5A 2GUDA 1CIYA 2BN0A 4W8JA 4ARXA 3O44A 5EXGA 5BN6E 5J50A 1UGWA 1ZGSA 3P8SA 2BMYA 4PIKA 4ARYA 1W99A 4QX1A 1WS5C 1J4SA 1DLCA 2QP2A 1UGYA 3VZFA 4AKCA 1XXQA 3VZGA 1J4UA 2NUOA 3VY6A 2HYQA 1WS4A 5J4TA 1UGXA 3APAA 1KUJA 2GUEA 2C9KA 2GUXA 1UGWC 4MOAA 2BMZA 3R51A 1X1VA 4R6QA 1XXRA 1C3NA 4AKBA 3LKYA 3R52A 4WOGA 4AK4A 1JACA 2HYRA 3LLZA 2JZ4A 4PIFA 1C3KA 1OUWA 1M26A 1UH1A 5AV7A 4AKDA 1VMOA 3LL0A 1UGYC 1VBPA 1KU8A 1ZGRA 3EB7A 4R6NA 3MIUA 4PITA 5J4XA 1J4TA 4DDNA 2GUCA 4QX3A 1WS4C 3TOWA 4MQ0A 3R50A 3LL1A 3AQGA 3LLYA 3VY7A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1VBO A;  2GTY A;  3WOB A;  5JM1 A;  1TP8 A;  3LL2 A;  1C3M A;  4GX7 A;  3MIT A;  1UH0 A;  1TOQ A;  1JOT A;  4R6O A;  3VZE A;  1XEZ A;  1PXD A;  3LM1 A;  3WOC A;  5J51 A;  4PIU A;  1WS5 A;  3MIV A;  4R6R A;  4R6P A;  2NU5 A;  2GUD A;  2BN0 A;  3O44 A;  5EXG A;  5BN6 E;  5J50 A;  1UGW A;  1ZGS A;  3P8S A;  2BMY A;  4PIK A;  1WS5 C;  1J4S A;  1UGY A;  3VZF A;  4AKC A;  1XXQ A;  3VZG A;  1J4U A;  2NUO A;  3VY6 A;  2HYQ A;  1WS4 A;  5J4T A;  1UGX A;  3APA A;  1KUJ A;  2GUE A;  2GUX A;  1UGW C;  2BMZ A;  3R51 A;  1X1V A;  4R6Q A;  1XXR A;  1C3N A;  4AKB A;  3LKY A;  3R52 A;  4WOG A;  4AK4 A;  1JAC A;  2HYR A;  3LLZ A;  2JZ4 A;  4PIF A;  1C3K A;  1OUW A;  1M26 A;  1UH1 A;  5AV7 A;  4AKD A;  3LL0 A;  1UGY C;  1VBP A;  1KU8 A;  1ZGR A;  4R6N A;  3MIU A;  4PIT A;  5J4X A;  1J4T A;  4DDN A;  2GUC A;  1WS4 C;  4MQ0 A;  3R50 A;  3LL1 A;  3AQG A;  3LLY A;  3VY7 A; 
#chains in the Genus database with same CATH topology
 4QX2 A;  1VBO A;  2GTY A;  3WOB A;  5JM1 A;  1TP8 A;  3LL2 A;  1I5P A;  1C3M A;  4GX7 A;  3MIT A;  1UH0 A;  4QX0 A;  1TOQ A;  1JOT A;  4R6O A;  3VZE A;  1XEZ A;  1PXD A;  3LM1 A;  3WOC A;  5J51 A;  4PIU A;  1JI6 A;  1WS5 A;  3MIV A;  4D8M A;  4R6R A;  4R6P A;  2NU5 A;  2GUD A;  1CIY A;  2BN0 A;  4W8J A;  4ARX A;  3O44 A;  5EXG A;  5BN6 E;  5J50 A;  1UGW A;  1ZGS A;  3P8S A;  2BMY A;  4PIK A;  4ARY A;  1W99 A;  4QX1 A;  1WS5 C;  1J4S A;  1DLC A;  2QP2 A;  1UGY A;  3VZF A;  4AKC A;  1XXQ A;  3VZG A;  1J4U A;  2NUO A;  3VY6 A;  2HYQ A;  1WS4 A;  5J4T A;  1UGX A;  3APA A;  1KUJ A;  2GUE A;  2C9K A;  2GUX A;  1UGW C;  4MOA A;  2BMZ A;  3R51 A;  1X1V A;  4R6Q A;  1XXR A;  1C3N A;  4AKB A;  3LKY A;  3R52 A;  4WOG A;  4AK4 A;  1JAC A;  2HYR A;  3LLZ A;  2JZ4 A;  4PIF A;  1C3K A;  1OUW A;  1M26 A;  1UH1 A;  5AV7 A;  4AKD A;  1VMO A;  3LL0 A;  1UGY C;  1VBP A;  1KU8 A;  1ZGR A;  3EB7 A;  4R6N A;  3MIU A;  4PIT A;  5J4X A;  1J4T A;  4DDN A;  2GUC A;  4QX3 A;  1WS4 C;  3TOW A;  4MQ0 A;  3R50 A;  3LL1 A;  3AQG A;  3LLY A;  3VY7 A; 
#chains in the Genus database with same CATH homology
 1VBO A;  2GTY A;  3WOB A;  5JM1 A;  1TP8 A;  3LL2 A;  1C3M A;  4GX7 A;  3MIT A;  1UH0 A;  1TOQ A;  1JOT A;  4R6O A;  3VZE A;  1XEZ A;  1PXD A;  3LM1 A;  3WOC A;  5J51 A;  4PIU A;  1WS5 A;  3MIV A;  4R6R A;  4R6P A;  2NU5 A;  2GUD A;  2BN0 A;  3O44 A;  5EXG A;  5BN6 E;  5J50 A;  1UGW A;  1ZGS A;  3P8S A;  2BMY A;  4PIK A;  1WS5 C;  1J4S A;  1UGY A;  3VZF A;  4AKC A;  1XXQ A;  3VZG A;  1J4U A;  2NUO A;  3VY6 A;  2HYQ A;  1WS4 A;  5J4T A;  1UGX A;  3APA A;  1KUJ A;  2GUE A;  2GUX A;  1UGW C;  2BMZ A;  3R51 A;  1X1V A;  4R6Q A;  1XXR A;  1C3N A;  4AKB A;  3LKY A;  3R52 A;  4WOG A;  4AK4 A;  1JAC A;  2HYR A;  3LLZ A;  2JZ4 A;  4PIF A;  1C3K A;  1OUW A;  1M26 A;  1UH1 A;  5AV7 A;  4AKD A;  3LL0 A;  1UGY C;  1VBP A;  1KU8 A;  1ZGR A;  4R6N A;  3MIU A;  4PIT A;  5J4X A;  1J4T A;  4DDN A;  2GUC A;  1WS4 C;  4MQ0 A;  3R50 A;  3LL1 A;  3AQG A;  3LLY A;  3VY7 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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3APAA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations