3AQGA

Crystal structure of human pancreatic secretory protein zg16b
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
133
structure length
133
Chain Sequence
KMYGPGGGKYFSTTEDYDHEITGLRVSVGLLLVKSVQVKLGDSWDVKLGALGGNTQEVTLQPGEYITKVFVAFQAFLRGMVMYTSKDRYFYFGKLDGQISSAYPSQEGQVLVGIYGQYQLLGIKSIGFEWNYP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structures of human secretory proteins ZG16p and ZG16b reveal a Jacalin-related beta-prism fold
pubmed doi rcsb
molecule tags Unknown function
source organism Homo sapiens
molecule keywords Zymogen granule protein 16 homolog B
total genus 22
structure length 133
sequence length 133
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-11-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3aqgA00
1OUWA 2GUCA 3MIVA 4PIFA 1XXRA 5BN6E 1JOTA 4AKCA 3R50A 1WS5C 1VBOA 3LL2A 4AK4A 3R51A 3WOBA 1UGWC 1WS5A 3O44A 3APAA 5J4TA 3VZGA 3WOCA 1UGWA 3MITA 1UH1A 4PIKA 1XEZA 2HYQA 3AQGA 5J50A 2GTYA 1KU8A 1UGXA 4MQ0A 1C3NA 1ZGRA 5J51A 1UH0A 3LLYA 3VY6A 1J4SA 2NU5A 4AKDA 4GX7A 4AKBA 2NUOA 4PIUA 1M26A 3LL1A 3LLZA 1JACA 3VZFA 4DDNA 2JZ4A 4R6PA 4R6NA 3VY7A 1WS4C 2BMZA 1C3MA 1WS4A 2BN0A 1VBPA 1XXQA 3P8SA 4R6RA 2BMYA 4R6OA 2GUEA 4R6QA 1PXDA 1X1VA 1KUJA 3R52A 5AV7A 3VZEA 1C3KA 5J4XA 1UGYC 3MIUA 1TOQA 3LKYA 3LL0A 5JM1A 1UGYA 2HYRA 1J4UA 1ZGSA 5EXGA 1TP8A 4WOGA 3LM1A 2GUDA 4PITA 1J4TA 2GUXA
chains in the Genus database with same CATH superfamily
1OUWA 2GUCA 3MIVA 4PIFA 1XXRA 5BN6E 1JOTA 4AKCA 3R50A 1WS5C 1VBOA 3LL2A 4QX2A 4AK4A 3R51A 3WOBA 1UGWC 1WS5A 3O44A 3APAA 5J4TA 4ARYA 3VZGA 3WOCA 1UGWA 3MITA 1VMOA 1UH1A 4PIKA 1XEZA 2HYQA 3AQGA 5J50A 2GTYA 1KU8A 1UGXA 4MQ0A 1C3NA 1ZGRA 4QX1A 5J51A 1UH0A 4W8JA 3LLYA 4QX3A 3TOWA 3VY6A 1J4SA 2NU5A 4AKDA 4GX7A 4AKBA 2NUOA 4PIUA 2C9KA 1M26A 3LL1A 3LLZA 1JACA 3VZFA 4DDNA 2JZ4A 4R6PA 4R6NA 3VY7A 1WS4C 2BMZA 1C3MA 1WS4A 2BN0A 1VBPA 1XXQA 1I5PA 1CIYA 3P8SA 4R6RA 2BMYA 4R6OA 2GUEA 1PXDA 4R6QA 4ARXA 1X1VA 1KUJA 3R52A 5AV7A 3VZEA 1C3KA 5J4XA 1UGYC 3MIUA 1TOQA 3LKYA 2QP2A 4MOAA 3LL0A 1W99A 4QX0A 4D8MA 5JM1A 1UGYA 2HYRA 1J4UA 1ZGSA 1JI6A 5EXGA 1TP8A 4WOGA 3LM1A 2GUDA 4PITA 1J4TA 2GUXA 1DLCA 3EB7A
chains in the Genus database with same CATH topology
1OUWA 2GUCA 3MIVA 4PIFA 1XXRA 5BN6E 1JOTA 4AKCA 3R50A 1WS5C 1VBOA 3LL2A 4AK4A 3R51A 3WOBA 1UGWC 1WS5A 3O44A 3APAA 5J4TA 3VZGA 3WOCA 1UGWA 3MITA 1UH1A 4PIKA 1XEZA 2HYQA 3AQGA 5J50A 2GTYA 1KU8A 1UGXA 4MQ0A 1C3NA 1ZGRA 5J51A 1UH0A 3LLYA 3VY6A 1J4SA 2NU5A 4AKDA 4GX7A 4AKBA 2NUOA 4PIUA 1M26A 3LL1A 3LLZA 1JACA 3VZFA 4DDNA 2JZ4A 4R6PA 4R6NA 3VY7A 1WS4C 2BMZA 1C3MA 1WS4A 2BN0A 1VBPA 1XXQA 3P8SA 4R6RA 2BMYA 4R6OA 2GUEA 4R6QA 1PXDA 1X1VA 1KUJA 3R52A 5AV7A 3VZEA 1C3KA 5J4XA 1UGYC 3MIUA 1TOQA 3LKYA 3LL0A 5JM1A 1UGYA 2HYRA 1J4UA 1ZGSA 5EXGA 1TP8A 4WOGA 3LM1A 2GUDA 4PITA 1J4TA 2GUXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1OUW A;  2GUC A;  3MIV A;  4PIF A;  1XXR A;  5BN6 E;  1JOT A;  4AKC A;  3R50 A;  1WS5 C;  1VBO A;  3LL2 A;  4AK4 A;  3R51 A;  3WOB A;  1UGW C;  1WS5 A;  3O44 A;  3APA A;  5J4T A;  3VZG A;  3WOC A;  1UGW A;  3MIT A;  1UH1 A;  4PIK A;  1XEZ A;  2HYQ A;  3AQG A;  5J50 A;  2GTY A;  1KU8 A;  1UGX A;  4MQ0 A;  1C3N A;  1ZGR A;  5J51 A;  1UH0 A;  3LLY A;  3VY6 A;  1J4S A;  2NU5 A;  4AKD A;  4GX7 A;  4AKB A;  2NUO A;  4PIU A;  1M26 A;  3LL1 A;  3LLZ A;  1JAC A;  3VZF A;  4DDN A;  2JZ4 A;  4R6P A;  4R6N A;  3VY7 A;  1WS4 C;  2BMZ A;  1C3M A;  1WS4 A;  2BN0 A;  1VBP A;  1XXQ A;  3P8S A;  4R6R A;  2BMY A;  4R6O A;  2GUE A;  4R6Q A;  1PXD A;  1X1V A;  1KUJ A;  3R52 A;  5AV7 A;  3VZE A;  1C3K A;  5J4X A;  1UGY C;  3MIU A;  1TOQ A;  3LKY A;  3LL0 A;  5JM1 A;  1UGY A;  2HYR A;  1J4U A;  1ZGS A;  5EXG A;  1TP8 A;  4WOG A;  3LM1 A;  2GUD A;  4PIT A;  1J4T A;  2GUX A; 
#chains in the Genus database with same CATH topology
 1OUW A;  2GUC A;  3MIV A;  4PIF A;  1XXR A;  5BN6 E;  1JOT A;  4AKC A;  3R50 A;  1WS5 C;  1VBO A;  3LL2 A;  4QX2 A;  4AK4 A;  3R51 A;  3WOB A;  1UGW C;  1WS5 A;  3O44 A;  3APA A;  5J4T A;  4ARY A;  3VZG A;  3WOC A;  1UGW A;  3MIT A;  1VMO A;  1UH1 A;  4PIK A;  1XEZ A;  2HYQ A;  3AQG A;  5J50 A;  2GTY A;  1KU8 A;  1UGX A;  4MQ0 A;  1C3N A;  1ZGR A;  4QX1 A;  5J51 A;  1UH0 A;  4W8J A;  3LLY A;  4QX3 A;  3TOW A;  3VY6 A;  1J4S A;  2NU5 A;  4AKD A;  4GX7 A;  4AKB A;  2NUO A;  4PIU A;  2C9K A;  1M26 A;  3LL1 A;  3LLZ A;  1JAC A;  3VZF A;  4DDN A;  2JZ4 A;  4R6P A;  4R6N A;  3VY7 A;  1WS4 C;  2BMZ A;  1C3M A;  1WS4 A;  2BN0 A;  1VBP A;  1XXQ A;  1I5P A;  1CIY A;  3P8S A;  4R6R A;  2BMY A;  4R6O A;  2GUE A;  1PXD A;  4R6Q A;  4ARX A;  1X1V A;  1KUJ A;  3R52 A;  5AV7 A;  3VZE A;  1C3K A;  5J4X A;  1UGY C;  3MIU A;  1TOQ A;  3LKY A;  2QP2 A;  4MOA A;  3LL0 A;  1W99 A;  4QX0 A;  4D8M A;  5JM1 A;  1UGY A;  2HYR A;  1J4U A;  1ZGS A;  1JI6 A;  5EXG A;  1TP8 A;  4WOG A;  3LM1 A;  2GUD A;  4PIT A;  1J4T A;  2GUX A;  1DLC A;  3EB7 A; 
#chains in the Genus database with same CATH homology
 1OUW A;  2GUC A;  3MIV A;  4PIF A;  1XXR A;  5BN6 E;  1JOT A;  4AKC A;  3R50 A;  1WS5 C;  1VBO A;  3LL2 A;  4AK4 A;  3R51 A;  3WOB A;  1UGW C;  1WS5 A;  3O44 A;  3APA A;  5J4T A;  3VZG A;  3WOC A;  1UGW A;  3MIT A;  1UH1 A;  4PIK A;  1XEZ A;  2HYQ A;  3AQG A;  5J50 A;  2GTY A;  1KU8 A;  1UGX A;  4MQ0 A;  1C3N A;  1ZGR A;  5J51 A;  1UH0 A;  3LLY A;  3VY6 A;  1J4S A;  2NU5 A;  4AKD A;  4GX7 A;  4AKB A;  2NUO A;  4PIU A;  1M26 A;  3LL1 A;  3LLZ A;  1JAC A;  3VZF A;  4DDN A;  2JZ4 A;  4R6P A;  4R6N A;  3VY7 A;  1WS4 C;  2BMZ A;  1C3M A;  1WS4 A;  2BN0 A;  1VBP A;  1XXQ A;  3P8S A;  4R6R A;  2BMY A;  4R6O A;  2GUE A;  4R6Q A;  1PXD A;  1X1V A;  1KUJ A;  3R52 A;  5AV7 A;  3VZE A;  1C3K A;  5J4X A;  1UGY C;  3MIU A;  1TOQ A;  3LKY A;  3LL0 A;  5JM1 A;  1UGY A;  2HYR A;  1J4U A;  1ZGS A;  5EXG A;  1TP8 A;  4WOG A;  3LM1 A;  2GUD A;  4PIT A;  1J4T A;  2GUX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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