3CIK | Genus

Total Genus 14

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	14
sequence length	60
structure length	60
Chain Sequence	SIAQARKLVEQLKMEANIDRIKVSKAAADLMAYCEAHAKEDPLLTPVPASENPFREKKFF

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 60 atoms

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60 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Structure of human G protein-coupled receptor kinase 2 in complex with the kinase inhibitor balanol. pubmed doi rcsb
molecule keywords	Beta-adrenergic receptor kinase 1
molecule tags	Transferase/signaling protein
source organism	Homo sapiens
total genus	14
structure length	60
sequence length	60
ec nomenclature
pdb deposition date	2008-03-11

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.260.10	Few Secondary Structures	Irregular	G Protein Gi Gamma 2	Transducin (heterotrimeric G protein), gamma chain	3cikG00

5HE2G 3KRWG 4MK0G 2BCJG 3KRXG 3CIKG 2PBIA 4PNKG 3PSCG 3PVWG 3SN6G 1A0RG 2TRCG 1TBGE 1GG2G 3PVUG 1GP2G 1B9XB 5TDHG 5KDOG 5HE0G 3AH8G 1GOTG 1OMWG 5HE1G 3V5WG 1B9YB 4KFMG 5HE3G 1XHMB
chains in the Genus database with same CATH superfamily

5HE2G 1HFES 3KRWG 4MK0G 2BCJG 3KRXG 3CIKG 2PBIA 4PNKG 3PSCG 3PVWG 3SN6G 1A0RG 2TRCG 1TBGE 1GG2G 3PVUG 1GP2G 1B9XB 5TDHG 5KDOG 5HE0G 3AH8G 1GOTG 1OMWG 5HE1G 3V5WG 1IOJA 1B9YB 4KFMG 5HE3G 1XHMB
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 5HE2 G;  3KRW G;  4MK0 G;  2BCJ G;  3KRX G;  3CIK G;  2PBI A;  4PNK G;  3PSC G;  3PVW G;  3SN6 G;  1A0R G;  2TRC G;  1TBG E;  1GG2 G;  3PVU G;  1GP2 G;  1B9X B;  5TDH G;  5KDO G;  5HE0 G;  3AH8 G;  1GOT G;  1OMW G;  5HE1 G;  3V5W G;  1B9Y B;  4KFM G;  5HE3 G;  1XHM B; 
#chains in the Genus database with same CATH topology
 5HE2 G;  1HFE S;  3KRW G;  4MK0 G;  2BCJ G;  3KRX G;  3CIK G;  2PBI A;  4PNK G;  3PSC G;  3PVW G;  3SN6 G;  1A0R G;  2TRC G;  1TBG E;  1GG2 G;  3PVU G;  1GP2 G;  1B9X B;  5TDH G;  5KDO G;  5HE0 G;  3AH8 G;  1GOT G;  1OMW G;  5HE1 G;  3V5W G;  1IOJ A;  1B9Y B;  4KFM G;  5HE3 G;  1XHM B; 
#chains in the Genus database with same CATH homology
 5HE2 G;  3KRW G;  4MK0 G;  2BCJ G;  3KRX G;  3CIK G;  2PBI A;  4PNK G;  3PSC G;  3PVW G;  3SN6 G;  1A0R G;  2TRC G;  1TBG E;  1GG2 G;  3PVU G;  1GP2 G;  1B9X B;  5TDH G;  5KDO G;  5HE0 G;  3AH8 G;  1GOT G;  1OMW G;  5HE1 G;  3V5W G;  1B9Y B;  4KFM G;  5HE3 G;  1XHM B;

...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3CIKG

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN