3EO8A

Crystal structure of blub-like flavoprotein (yp_001089088.1) from clostridium difficile 630 at 1.74 a resolution
Total Genus 65
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
65
sequence length
219
structure length
219
Chain Sequence
GMELQDTIFKRQSVRKFKNQDVSDEDILKMIKAAGAAPSGKNIQNWHFVVIKRRDLMEKIADVITKKQQEILVEMDKVSVDKANRFRKFVKNFTLFYLKAPVLVLVFTKVYNPSGYYELELIDAPKETIDKLFIRNPGMQSLGAAIENFTLSAIELGYGSCWLTSQNYAADEIEAVLEAETGFEKGEYFLGAMLALGVPEDNLKSPSKKPVEEICTFIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
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publication title Crystal structure of BluB-like flavoprotein (YP_001089088.1) from CLOSTRIDIUM DIFFICILE 630 at 1.74 A resolution
rcsb
molecule tags Flavoprotein
source organism Clostridium difficile 630
molecule keywords BluB-like flavoprotein
total genus 65
structure length 219
sequence length 219
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2008-09-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00881 Nitroreductase Nitroreductase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 3eo8A00
2H0UA 1DS7A 3GB5A 3GE6A 4QLXA 3GE5A 4BN9A 2WQFA 3GAGA 1VKWA 2WZVA 1V5ZA 1YLUA 3GH8A 3M5KA 1ICVA 1YKIA 3GFDA 2HAYA 3X22A 1BKJA 3HZNA 4EO3A 3BEMA 4BNBA 3BM1A 2IFAA 3N2SA 2R01A 1KQDA 2B67A 2YMVA 4XOOA 1V5YA 3HOIA 5KRDA 1OOQA 1IDTA 1NECA 1OO6A 3BM2A 3KOQA 4TTCA 2ISLA 3TNZA 2ISKA 3H4OA 1OO5A 4BN6A 5HEIA 5KO8A 3E39A 3GFAA 3EO7A 5KO7A 4TTBA 3PXVA 4BN7A 1KQBA 4DN2A 1F5VA 3GBHA 3EK3A 4BN8A 4URPA 5HDJA 2BKJA 3QDLA 3OF4A 1YLRA 3TO0A 3K6HA 2ISJA 1NOXA 4G8SA 1ICUA 3X21A 3E10A 1ZCHA 2I7HA 4XOMA 1KQCA 3GR3A 3EO8A 3KWKA 5J6CA 1VFRA 1YWQA 3EOFA 2FREA 3G14A 2WZWA 3HJ9A 1OONA 1ICRA 4QLYA 4XOQA
chains in the Genus database with same CATH superfamily
2H0UA 1DS7A 3GB5A 3GE6A 4QLXA 3GE5A 4BN9A 2WQFA 3GAGA 1VKWA 2WZVA 1V5ZA 1YLUA 3GH8A 3M5KA 1ICVA 1YKIA 3GFDA 2HAYA 3X22A 1BKJA 3HZNA 4EO3A 3BEMA 4BNBA 3BM1A 2IFAA 3N2SA 2R01A 1KQDA 2B67A 2YMVA 4XOOA 1V5YA 3HOIA 5KRDA 1OOQA 1IDTA 1NECA 1OO6A 3BM2A 3KOQA 4TTCA 2ISLA 3TNZA 2ISKA 3H4OA 1OO5A 4BN6A 5HEIA 5KO8A 3E39A 3GFAA 3EO7A 5KO7A 4TTBA 3PXVA 4BN7A 1KQBA 4DN2A 1F5VA 3GBHA 3EK3A 4BN8A 4URPA 5HDJA 2BKJA 3QDLA 3OF4A 1YLRA 3TO0A 3K6HA 2ISJA 1NOXA 4G8SA 1ICUA 3X21A 3E10A 1ZCHA 2I7HA 4XOMA 1KQCA 3GR3A 3EO8A 1J6RA 3KWKA 5J6CA 1VFRA 1YWQA 3EOFA 2FREA 3G14A 2WZWA 3HJ9A 1OONA 1ICRA 4QLYA 4XOQA
chains in the Genus database with same CATH topology
2H0UA 1DS7A 3GB5A 3GE6A 4QLXA 3GE5A 4BN9A 2WQFA 3GAGA 1VKWA 2WZVA 1V5ZA 1YLUA 3GH8A 3M5KA 1ICVA 1YKIA 3GFDA 2HAYA 3X22A 1BKJA 3HZNA 4EO3A 3BEMA 4BNBA 3BM1A 2IFAA 3N2SA 2R01A 1KQDA 2B67A 2YMVA 4XOOA 1V5YA 3HOIA 5KRDA 1OOQA 1IDTA 1NECA 1OO6A 3BM2A 3KOQA 4TTCA 2ISLA 3TNZA 2ISKA 3H4OA 1OO5A 4BN6A 5HEIA 5KO8A 3E39A 3GFAA 3EO7A 5KO7A 4TTBA 3PXVA 4BN7A 1KQBA 4DN2A 1F5VA 3GBHA 3EK3A 4BN8A 4URPA 5HDJA 2BKJA 3QDLA 3OF4A 1YLRA 3TO0A 3K6HA 2ISJA 1NOXA 4G8SA 1ICUA 3X21A 3E10A 1ZCHA 2I7HA 4XOMA 1KQCA 3GR3A 3EO8A 1J6RA 3KWKA 5J6CA 1VFRA 1YWQA 3EOFA 2FREA 3G14A 2WZWA 3HJ9A 1OONA 1ICRA 4QLYA 4XOQA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2H0U A;  1DS7 A;  3GB5 A;  3GE6 A;  4QLX A;  3GE5 A;  4BN9 A;  2WQF A;  3GAG A;  1VKW A;  2WZV A;  1V5Z A;  1YLU A;  3GH8 A;  3M5K A;  1ICV A;  1YKI A;  3GFD A;  2HAY A;  3X22 A;  1BKJ A;  3HZN A;  4EO3 A;  3BEM A;  4BNB A;  3BM1 A;  2IFA A;  3N2S A;  2R01 A;  1KQD A;  2B67 A;  2YMV A;  4XOO A;  1V5Y A;  3HOI A;  5KRD A;  1OOQ A;  1IDT A;  1NEC A;  1OO6 A;  3BM2 A;  3KOQ A;  4TTC A;  2ISL A;  3TNZ A;  2ISK A;  3H4O A;  1OO5 A;  4BN6 A;  5HEI A;  5KO8 A;  3E39 A;  3GFA A;  3EO7 A;  5KO7 A;  4TTB A;  3PXV A;  4BN7 A;  1KQB A;  4DN2 A;  1F5V A;  3GBH A;  3EK3 A;  4BN8 A;  4URP A;  5HDJ A;  2BKJ A;  3QDL A;  3OF4 A;  1YLR A;  3TO0 A;  3K6H A;  2ISJ A;  1NOX A;  4G8S A;  1ICU A;  3X21 A;  3E10 A;  1ZCH A;  2I7H A;  4XOM A;  1KQC A;  3GR3 A;  3EO8 A;  3KWK A;  5J6C A;  1VFR A;  1YWQ A;  3EOF A;  2FRE A;  3G14 A;  2WZW A;  3HJ9 A;  1OON A;  1ICR A;  4QLY A;  4XOQ A; 
#chains in the Genus database with same CATH topology
 2H0U A;  1DS7 A;  3GB5 A;  3GE6 A;  4QLX A;  3GE5 A;  4BN9 A;  2WQF A;  3GAG A;  1VKW A;  2WZV A;  1V5Z A;  1YLU A;  3GH8 A;  3M5K A;  1ICV A;  1YKI A;  3GFD A;  2HAY A;  3X22 A;  1BKJ A;  3HZN A;  4EO3 A;  3BEM A;  4BNB A;  3BM1 A;  2IFA A;  3N2S A;  2R01 A;  1KQD A;  2B67 A;  2YMV A;  4XOO A;  1V5Y A;  3HOI A;  5KRD A;  1OOQ A;  1IDT A;  1NEC A;  1OO6 A;  3BM2 A;  3KOQ A;  4TTC A;  2ISL A;  3TNZ A;  2ISK A;  3H4O A;  1OO5 A;  4BN6 A;  5HEI A;  5KO8 A;  3E39 A;  3GFA A;  3EO7 A;  5KO7 A;  4TTB A;  3PXV A;  4BN7 A;  1KQB A;  4DN2 A;  1F5V A;  3GBH A;  3EK3 A;  4BN8 A;  4URP A;  5HDJ A;  2BKJ A;  3QDL A;  3OF4 A;  1YLR A;  3TO0 A;  3K6H A;  2ISJ A;  1NOX A;  4G8S A;  1ICU A;  3X21 A;  3E10 A;  1ZCH A;  2I7H A;  4XOM A;  1KQC A;  3GR3 A;  3EO8 A;  1J6R A;  3KWK A;  5J6C A;  1VFR A;  1YWQ A;  3EOF A;  2FRE A;  3G14 A;  2WZW A;  3HJ9 A;  1OON A;  1ICR A;  4QLY A;  4XOQ A; 
#chains in the Genus database with same CATH homology
 2H0U A;  1DS7 A;  3GB5 A;  3GE6 A;  4QLX A;  3GE5 A;  4BN9 A;  2WQF A;  3GAG A;  1VKW A;  2WZV A;  1V5Z A;  1YLU A;  3GH8 A;  3M5K A;  1ICV A;  1YKI A;  3GFD A;  2HAY A;  3X22 A;  1BKJ A;  3HZN A;  4EO3 A;  3BEM A;  4BNB A;  3BM1 A;  2IFA A;  3N2S A;  2R01 A;  1KQD A;  2B67 A;  2YMV A;  4XOO A;  1V5Y A;  3HOI A;  5KRD A;  1OOQ A;  1IDT A;  1NEC A;  1OO6 A;  3BM2 A;  3KOQ A;  4TTC A;  2ISL A;  3TNZ A;  2ISK A;  3H4O A;  1OO5 A;  4BN6 A;  5HEI A;  5KO8 A;  3E39 A;  3GFA A;  3EO7 A;  5KO7 A;  4TTB A;  3PXV A;  4BN7 A;  1KQB A;  4DN2 A;  1F5V A;  3GBH A;  3EK3 A;  4BN8 A;  4URP A;  5HDJ A;  2BKJ A;  3QDL A;  3OF4 A;  1YLR A;  3TO0 A;  3K6H A;  2ISJ A;  1NOX A;  4G8S A;  1ICU A;  3X21 A;  3E10 A;  1ZCH A;  2I7H A;  4XOM A;  1KQC A;  3GR3 A;  3EO8 A;  1J6R A;  3KWK A;  5J6C A;  1VFR A;  1YWQ A;  3EOF A;  2FRE A;  3G14 A;  2WZW A;  3HJ9 A;  1OON A;  1ICR A;  4QLY A;  4XOQ A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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