3EOFA

Crystal structure of putative oxidoreductase (yp_213212.1) from bacteroides fragilis nctc 9343 at 1.99 a resolution
Total Genus 72
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
72
sequence length
248
structure length
248
Chain Sequence
GMMDTVKNRRTIRKYQQKDITPDLLNDLLETSFRASTMGGMQLYSVVVTRDAEKKEILSPAHFNQPMVKEAPVVLTFCADFRRFCKYCQERNAVPGYGNLMSFLNAAMDTLLVAQTFCTLAEEAGLGICYLGTTTYNPQMIIDALHLPELVFPITTVTVGYPAESPKQVDRLPIEGIIHEESYHDYTAEDINRLYAYKESLPENKLFIEENQKETLPQVFTDVRYTKKDNEFMSENLLKVLRRQGFMD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of putative oxidoreductase (YP_213212.1) from Bacteroides fragilis NCTC 9343 at 1.99 A resolution
rcsb
molecule tags Oxidoreductase
source organism Bacteroides fragilis nctc 9343
molecule keywords Putative oxidoreductase
total genus 72
structure length 248
sequence length 248
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-09-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00881 Nitroreductase Nitroreductase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 3eofA00
3GR3A 3EOFA 3EO7A 2BKJA 2ISKA 5KRDA 1NECA 4G8SA 2WZVA 1VFRA 2H0UA 1OO6A 1OONA 3KWKA 1ZCHA 1YKIA 4BN7A 3EK3A 2R01A 3G14A 2I7HA 3GFAA 1ICRA 2FREA 1YWQA 3PXVA 1V5ZA 5J6CA 2YMVA 4XOMA 3TO0A 3GFDA 3GBHA 3H4OA 5KO8A 1KQBA 4BNBA 2HAYA 3X21A 4XOOA 3N2SA 1OOQA 1ICVA 3HJ9A 3KOQA 3TNZA 1BKJA 1DS7A 3OF4A 1OO5A 1V5YA 4TTBA 4XOQA 4DN2A 3GE5A 4URPA 3E10A 1YLRA 5KO7A 1F5VA 3BM1A 1KQDA 1ICUA 2ISLA 3BM2A 3GAGA 3QDLA 3GB5A 2IFAA 1NOXA 3GE6A 2ISJA 3EO8A 4BN9A 2WZWA 4QLXA 5HDJA 3HOIA 2WQFA 2B67A 3BEMA 1KQCA 3K6HA 3X22A 3GH8A 3M5KA 4EO3A 1YLUA 1IDTA 4TTCA 3HZNA 4QLYA 5HEIA 4BN6A 1VKWA 4BN8A 3E39A
chains in the Genus database with same CATH superfamily
3GR3A 3EOFA 3EO7A 2BKJA 2ISKA 5KRDA 1NECA 4G8SA 2WZVA 1VFRA 2H0UA 1OO6A 1OONA 3KWKA 1ZCHA 1YKIA 4BN7A 3EK3A 2R01A 3G14A 2I7HA 3GFAA 1ICRA 2FREA 1YWQA 3PXVA 1V5ZA 5J6CA 2YMVA 4XOMA 3TO0A 3GFDA 3GBHA 3H4OA 5KO8A 1KQBA 4BNBA 2HAYA 3X21A 4XOOA 3N2SA 1OOQA 1ICVA 3HJ9A 3KOQA 3TNZA 1BKJA 1DS7A 3OF4A 1OO5A 1V5YA 4TTBA 4XOQA 4DN2A 3GE5A 4URPA 3E10A 1YLRA 5KO7A 1F5VA 3BM1A 1KQDA 1ICUA 2ISLA 3BM2A 3GAGA 3QDLA 3GB5A 1J6RA 2IFAA 1NOXA 3GE6A 2ISJA 3EO8A 4BN9A 2WZWA 4QLXA 5HDJA 3HOIA 2WQFA 2B67A 3BEMA 1KQCA 3K6HA 3X22A 3GH8A 3M5KA 4EO3A 1YLUA 1IDTA 4TTCA 3HZNA 4QLYA 5HEIA 4BN6A 1VKWA 4BN8A 3E39A
chains in the Genus database with same CATH topology
3GR3A 3EOFA 3EO7A 2BKJA 2ISKA 5KRDA 1NECA 4G8SA 2WZVA 1VFRA 2H0UA 1OO6A 1OONA 3KWKA 1ZCHA 1YKIA 4BN7A 3EK3A 2R01A 3G14A 2I7HA 3GFAA 1ICRA 2FREA 1YWQA 3PXVA 1V5ZA 5J6CA 2YMVA 4XOMA 3TO0A 3GFDA 3GBHA 3H4OA 5KO8A 1KQBA 4BNBA 2HAYA 3X21A 4XOOA 3N2SA 1OOQA 1ICVA 3HJ9A 3KOQA 3TNZA 1BKJA 1DS7A 3OF4A 1OO5A 1V5YA 4TTBA 4XOQA 4DN2A 3GE5A 4URPA 3E10A 1YLRA 5KO7A 1F5VA 3BM1A 1KQDA 1ICUA 2ISLA 3BM2A 3GAGA 3QDLA 3GB5A 1J6RA 2IFAA 1NOXA 3GE6A 2ISJA 3EO8A 4BN9A 2WZWA 4QLXA 5HDJA 3HOIA 2WQFA 2B67A 3BEMA 1KQCA 3K6HA 3X22A 3GH8A 3M5KA 4EO3A 1YLUA 1IDTA 4TTCA 3HZNA 4QLYA 5HEIA 4BN6A 1VKWA 4BN8A 3E39A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GR3 A;  3EOF A;  3EO7 A;  2BKJ A;  2ISK A;  5KRD A;  1NEC A;  4G8S A;  2WZV A;  1VFR A;  2H0U A;  1OO6 A;  1OON A;  3KWK A;  1ZCH A;  1YKI A;  4BN7 A;  3EK3 A;  2R01 A;  3G14 A;  2I7H A;  3GFA A;  1ICR A;  2FRE A;  1YWQ A;  3PXV A;  1V5Z A;  5J6C A;  2YMV A;  4XOM A;  3TO0 A;  3GFD A;  3GBH A;  3H4O A;  5KO8 A;  1KQB A;  4BNB A;  2HAY A;  3X21 A;  4XOO A;  3N2S A;  1OOQ A;  1ICV A;  3HJ9 A;  3KOQ A;  3TNZ A;  1BKJ A;  1DS7 A;  3OF4 A;  1OO5 A;  1V5Y A;  4TTB A;  4XOQ A;  4DN2 A;  3GE5 A;  4URP A;  3E10 A;  1YLR A;  5KO7 A;  1F5V A;  3BM1 A;  1KQD A;  1ICU A;  2ISL A;  3BM2 A;  3GAG A;  3QDL A;  3GB5 A;  2IFA A;  1NOX A;  3GE6 A;  2ISJ A;  3EO8 A;  4BN9 A;  2WZW A;  4QLX A;  5HDJ A;  3HOI A;  2WQF A;  2B67 A;  3BEM A;  1KQC A;  3K6H A;  3X22 A;  3GH8 A;  3M5K A;  4EO3 A;  1YLU A;  1IDT A;  4TTC A;  3HZN A;  4QLY A;  5HEI A;  4BN6 A;  1VKW A;  4BN8 A;  3E39 A; 
#chains in the Genus database with same CATH topology
 3GR3 A;  3EOF A;  3EO7 A;  2BKJ A;  2ISK A;  5KRD A;  1NEC A;  4G8S A;  2WZV A;  1VFR A;  2H0U A;  1OO6 A;  1OON A;  3KWK A;  1ZCH A;  1YKI A;  4BN7 A;  3EK3 A;  2R01 A;  3G14 A;  2I7H A;  3GFA A;  1ICR A;  2FRE A;  1YWQ A;  3PXV A;  1V5Z A;  5J6C A;  2YMV A;  4XOM A;  3TO0 A;  3GFD A;  3GBH A;  3H4O A;  5KO8 A;  1KQB A;  4BNB A;  2HAY A;  3X21 A;  4XOO A;  3N2S A;  1OOQ A;  1ICV A;  3HJ9 A;  3KOQ A;  3TNZ A;  1BKJ A;  1DS7 A;  3OF4 A;  1OO5 A;  1V5Y A;  4TTB A;  4XOQ A;  4DN2 A;  3GE5 A;  4URP A;  3E10 A;  1YLR A;  5KO7 A;  1F5V A;  3BM1 A;  1KQD A;  1ICU A;  2ISL A;  3BM2 A;  3GAG A;  3QDL A;  3GB5 A;  1J6R A;  2IFA A;  1NOX A;  3GE6 A;  2ISJ A;  3EO8 A;  4BN9 A;  2WZW A;  4QLX A;  5HDJ A;  3HOI A;  2WQF A;  2B67 A;  3BEM A;  1KQC A;  3K6H A;  3X22 A;  3GH8 A;  3M5K A;  4EO3 A;  1YLU A;  1IDT A;  4TTC A;  3HZN A;  4QLY A;  5HEI A;  4BN6 A;  1VKW A;  4BN8 A;  3E39 A; 
#chains in the Genus database with same CATH homology
 3GR3 A;  3EOF A;  3EO7 A;  2BKJ A;  2ISK A;  5KRD A;  1NEC A;  4G8S A;  2WZV A;  1VFR A;  2H0U A;  1OO6 A;  1OON A;  3KWK A;  1ZCH A;  1YKI A;  4BN7 A;  3EK3 A;  2R01 A;  3G14 A;  2I7H A;  3GFA A;  1ICR A;  2FRE A;  1YWQ A;  3PXV A;  1V5Z A;  5J6C A;  2YMV A;  4XOM A;  3TO0 A;  3GFD A;  3GBH A;  3H4O A;  5KO8 A;  1KQB A;  4BNB A;  2HAY A;  3X21 A;  4XOO A;  3N2S A;  1OOQ A;  1ICV A;  3HJ9 A;  3KOQ A;  3TNZ A;  1BKJ A;  1DS7 A;  3OF4 A;  1OO5 A;  1V5Y A;  4TTB A;  4XOQ A;  4DN2 A;  3GE5 A;  4URP A;  3E10 A;  1YLR A;  5KO7 A;  1F5V A;  3BM1 A;  1KQD A;  1ICU A;  2ISL A;  3BM2 A;  3GAG A;  3QDL A;  3GB5 A;  1J6R A;  2IFA A;  1NOX A;  3GE6 A;  2ISJ A;  3EO8 A;  4BN9 A;  2WZW A;  4QLX A;  5HDJ A;  3HOI A;  2WQF A;  2B67 A;  3BEM A;  1KQC A;  3K6H A;  3X22 A;  3GH8 A;  3M5K A;  4EO3 A;  1YLU A;  1IDT A;  4TTC A;  3HZN A;  4QLY A;  5HEI A;  4BN6 A;  1VKW A;  4BN8 A;  3E39 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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