3ES5A

Crystal structure of partitivirus (psv-f)
Total Genus 119
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
119
sequence length
379
structure length
379
Chain Sequence
MRLGWIDPLPQVDTIFPLGLEPNVESIPAGEVELDFNLPETIAKPFADTVTSVGDRIQLVDDDKENIATSIYGLSFFKAARQLYSTMLDHEKAVNQPLKAVYYDETPIPAHMSGALGIIGHMKTKVGDVLVKDAGVLFKRGTAAGVTKFSEIDNDKTWNLDCSKLVWADHSSLSMIKRLASEKISQLVKQRYRVTDAQGHVYSVSMPQLTDQALPDYYDSIPDVAPNSDQLRVLTAALQMSLAQFRNDELPHDEDRSDLLTTLDLLYADGAYEISALRDQFELLMARYTTDFKWRVESIFKVGPPPAGTTGYGAQTVSSTGNTARWQFPLSDADINIGYLFSPSKSFSLFPKMVGYSKRAREDASASFANSDAKKFYAD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Atomic structure reveals the unique capsid organization of a dsRNA virus.
pubmed doi rcsb
molecule tags Virus
molecule keywords Putative capsid protein
total genus 119
structure length 379
sequence length 379
chains with identical sequence B
ec nomenclature
pdb deposition date 2008-10-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.272.60 Mainly Alpha Up-down Bundle Zinc Finger, Delta Prime; domain 3 Zinc Finger, Delta Prime; domain 3 3es5A02
3ES5A
chains in the Genus database with same CATH superfamily
3RC3A 1JR3E 1SXJB 2CHVA 1JQJC 3ZH9B 2R9GA 1XXHA 1A5TA 3RC8A 3GLHA 4CHDA 3U60A 1IQPA 3GLGA 3BGEA 1MW5A 3GLFA 3U61A 2CHQA 3GLIA 3U5ZA 3U61B 3PVSA 3GLHE 1XXHE 1SXJA 1SXJC 2QW6A 1SXJD 3GLGE 3GLFE 1XXHB 3GLIE 3GLHB 3U60B 3ES5A 1JR3A 3GLGB 3CTDA 1JR3D 3GLFB 1SXJE 3GLIB 3U5ZB 2GNOA
chains in the Genus database with same CATH topology
3RC3A 1JR3E 1SXJB 2CHVA 1JQJC 3ZH9B 2R9GA 1XXHA 1A5TA 3RC8A 3GLHA 4CHDA 3U60A 1IQPA 3GLGA 3BGEA 1MW5A 3GLFA 3U61A 2CHQA 3GLIA 3U5ZA 3U61B 3PVSA 3GLHE 1XXHE 1SXJA 1SXJC 2QW6A 1SXJD 3GLGE 3GLFE 1XXHB 3GLIE 3GLHB 3U60B 3ES5A 1JR3A 3GLGB 3CTDA 1JR3D 3GLFB 1SXJE 3GLIB 3U5ZB 2GNOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ES5 A; 
#chains in the Genus database with same CATH topology
 3RC3 A;  1JR3 E;  1SXJ B;  2CHV A;  1JQJ C;  3ZH9 B;  2R9G A;  1XXH A;  1A5T A;  3RC8 A;  3GLH A;  4CHD A;  3U60 A;  1IQP A;  3GLG A;  3BGE A;  1MW5 A;  3GLF A;  3U61 A;  2CHQ A;  3GLI A;  3U5Z A;  3U61 B;  3PVS A;  3GLH E;  1XXH E;  1SXJ A;  1SXJ C;  2QW6 A;  1SXJ D;  3GLG E;  3GLF E;  1XXH B;  3GLI E;  3GLH B;  3U60 B;  3ES5 A;  1JR3 A;  3GLG B;  3CTD A;  1JR3 D;  3GLF B;  1SXJ E;  3GLI B;  3U5Z B;  2GNO A; 
#chains in the Genus database with same CATH homology
 3RC3 A;  1JR3 E;  1SXJ B;  2CHV A;  1JQJ C;  3ZH9 B;  2R9G A;  1XXH A;  1A5T A;  3RC8 A;  3GLH A;  4CHD A;  3U60 A;  1IQP A;  3GLG A;  3BGE A;  1MW5 A;  3GLF A;  3U61 A;  2CHQ A;  3GLI A;  3U5Z A;  3U61 B;  3PVS A;  3GLH E;  1XXH E;  1SXJ A;  1SXJ C;  2QW6 A;  1SXJ D;  3GLG E;  3GLF E;  1XXH B;  3GLI E;  3GLH B;  3U60 B;  3ES5 A;  1JR3 A;  3GLG B;  3CTD A;  1JR3 D;  3GLF B;  1SXJ E;  3GLI B;  3U5Z B;  2GNO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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