3FKSH

Yeast f1 atpase in the absence of bound nucleotides
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
125
structure length
116
Chain Sequence
KLQFALPHETLYSGSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCVTAIEALESFSIKNLLAEAKKNVSSEAAEAAIQVEVLENLQS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords ATP synthase subunit alpha, mitochondrial
publication title Asymmetric structure of the yeast f1 ATPase in the absence of bound nucleotides.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 11
structure length 116
sequence length 125
chains with identical sequence Q, Z
ec nomenclature
pdb deposition date 2008-12-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF02823 ATP-synt_DE_N ATP synthase, Delta/Epsilon chain, beta-sandwich domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.15.10 Mainly Beta Sandwich ATP Synthase; domain 1 F0F1 ATP synthase delta/epsilon subunit, N-terminal 3fksH01
2XOKH 5DN6I 2HLDH 4ASUH 3OEHH 1H8EH 1BSNA 5FL7H 3FKSH 3OAAH 1E79H 1BSHA 2WSSH 2RQ6A 3OE7H 1AQTA 2E5YA 2XNDH 3OFNH 2V7QH 2RQ7A 1FS0E 2QE7H 4YXWH
chains in the Genus database with same CATH superfamily
2XOKH 5DN6I 2HLDH 4ASUH 3OEHH 1H8EH 1BSNA 5FL7H 3FKSH 3OAAH 1E79H 1BSHA 2WSSH 2RQ6A 3OE7H 1AQTA 2E5YA 2XNDH 3OFNH 2V7QH 2RQ7A 1FS0E 2QE7H 4YXWH
chains in the Genus database with same CATH topology
2XOKH 5DN6I 2HLDH 4ASUH 3OEHH 1H8EH 1BSNA 5FL7H 3FKSH 3OAAH 1E79H 1BSHA 2WSSH 2RQ6A 3OE7H 1AQTA 2E5YA 2XNDH 3OFNH 2V7QH 2RQ7A 1FS0E 2QE7H 4YXWH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2XOK H;  5DN6 I;  2HLD H;  4ASU H;  3OEH H;  1H8E H;  1BSN A;  5FL7 H;  3FKS H;  3OAA H;  1E79 H;  1BSH A;  2WSS H;  2RQ6 A;  3OE7 H;  1AQT A;  2E5Y A;  2XND H;  3OFN H;  2V7Q H;  2RQ7 A;  1FS0 E;  2QE7 H;  4YXW H; 
#chains in the Genus database with same CATH topology
 2XOK H;  5DN6 I;  2HLD H;  4ASU H;  3OEH H;  1H8E H;  1BSN A;  5FL7 H;  3FKS H;  3OAA H;  1E79 H;  1BSH A;  2WSS H;  2RQ6 A;  3OE7 H;  1AQT A;  2E5Y A;  2XND H;  3OFN H;  2V7Q H;  2RQ7 A;  1FS0 E;  2QE7 H;  4YXW H; 
#chains in the Genus database with same CATH homology
 2XOK H;  5DN6 I;  2HLD H;  4ASU H;  3OEH H;  1H8E H;  1BSN A;  5FL7 H;  3FKS H;  3OAA H;  1E79 H;  1BSH A;  2WSS H;  2RQ6 A;  3OE7 H;  1AQT A;  2E5Y A;  2XND H;  3OFN H;  2V7Q H;  2RQ7 A;  1FS0 E;  2QE7 H;  4YXW H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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