3I9HA

Crystal structure of a betagamma-crystallin domain from clostridium beijerinckii
Total Genus 17
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
17
sequence length
87
structure length
87
Chain Sequence
KAVTFYEDINYGGASVSLQPGNYTLSQLNTAKIPNDWMTSLKVPSGWTVDVYENDNFTGTKWTYTSDTPWVGNDANDKMTSVKIYST
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title betagamma-Crystallin superfamily contains a universal motif for binding calcium.
pubmed doi rcsb
molecule keywords Beta and gamma crystallin
molecule tags Metal binding protein
source organism Clostridium beijerinckii
total genus 17
structure length 87
sequence length 87
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2009-07-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 3i9hA00
3QK3A 1GCSA 3ENTA 1YTQA 3SO0A 4EL6A 5HT8A 2JDGA 4W9AA 1PRRA 1AG4A 4GR7A 3CW3A 1A45A 1A7HA 1ELPA 1I5IA 1H4AX 1ZGTA 2B1OA 1PRSA 2M3UA 1NPSA 1HDFA 2M3TA 1ZIRA 1E7NA 1ZIQA 2DADA 2M3CA 3HZ2A 3HZBA 2NBRA 2K1WA 4AKAA 1M8UA 2K1XA 4PSRA 1BD7A 1AMMA 1BLBA 1ZWMA 3ENUA 2G98A 2V2UA 4IAUA 2BB2A 1OKIA 4GCRA 2JDFA 2A5MA 4PSPA 2KFBA 1ZIEA 1GAMA 2BV2A 3IAJA 3I9HA 3LWKA 1HA4A 1ZWOA 5HT9A 1DSLA 3SNYA 4W9BA 4FD9A 3SNZA 1A5DA 1HK0X 3SO1A 4NI3A 1YHPA 4JGFA 2KP5A
chains in the Genus database with same CATH superfamily
3SO0A 4W9AA 1AG4A 1PRSA 1ZIRA 2NBRA 2BB2A 2JDFA 3LWKA 1ZWOA 4W9BA 1A5DA 4NI3A 1YHPA 4JGFA 2KP5A 3QK3A 1GCSA 4EL6A 1A45A 1H4AX 1I5IA 2M3UA 1HDFA 2M3TA 2DADA 1M8UA 4PSRA 1C01A 2G98A 4GCRA 1ZIEA 1GAMA 2BV2A 5HT9A 1HA4A 3SO1A 1HK0X 1BHUA 1YTQA 5HT8A 2JDGA 4GR7A 1ZGTA 2B1OA 1NPSA 1WKTA 1E7NA 1G6EA 3HZ2A 1F53A 2K1XA 1BD7A 1ZWMA 2V2UA 2A5MA 4PSPA 3I9HA 1DSLA 3SNYA 4FD9A 3UJZA 1GH5A 3ENTA 1PRRA 3CW3A 1A7HA 1ELPA 3HZBA 2M3CA 1ZIQA 2K1WA 4AKAA 1BLBA 1AMMA 3ENUA 4IAUA 1OKIA 2KFBA 3IAJA 3SNZA
chains in the Genus database with same CATH topology
3QK3A 1GCSA 3ENTA 1YTQA 3SO0A 4EL6A 5HT8A 2JDGA 4W9AA 1PRRA 1AG4A 4GR7A 3CW3A 1A45A 1A7HA 1ELPA 1I5IA 1H4AX 1ZGTA 2B1OA 1PRSA 2M3UA 1NPSA 1HDFA 2M3TA 1ZIRA 1E7NA 1ZIQA 2DADA 2M3CA 3HZ2A 3HZBA 2NBRA 2K1WA 4AKAA 1M8UA 2K1XA 4PSRA 1BD7A 1AMMA 1BLBA 1ZWMA 3ENUA 2G98A 2V2UA 4IAUA 2BB2A 1OKIA 4GCRA 2JDFA 2A5MA 4PSPA 2KFBA 1ZIEA 1GAMA 2BV2A 3IAJA 3I9HA 3LWKA 1HA4A 1ZWOA 5HT9A 1DSLA 3SNYA 4W9BA 4FD9A 3SNZA 1A5DA 1HK0X 3SO1A 4NI3A 1YHPA 4JGFA 2KP5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QK3 A;  1GCS A;  3ENT A;  1YTQ A;  3SO0 A;  4EL6 A;  5HT8 A;  2JDG A;  4W9A A;  1PRR A;  1AG4 A;  4GR7 A;  3CW3 A;  1A45 A;  1A7H A;  1ELP A;  1I5I A;  1H4A X;  1ZGT A;  2B1O A;  1PRS A;  2M3U A;  1NPS A;  1HDF A;  2M3T A;  1ZIR A;  1E7N A;  1ZIQ A;  2DAD A;  2M3C A;  3HZ2 A;  3HZB A;  2NBR A;  2K1W A;  4AKA A;  1M8U A;  2K1X A;  4PSR A;  1BD7 A;  1AMM A;  1BLB A;  1ZWM A;  3ENU A;  2G98 A;  2V2U A;  4IAU A;  2BB2 A;  1OKI A;  4GCR A;  2JDF A;  2A5M A;  4PSP A;  2KFB A;  1ZIE A;  1GAM A;  2BV2 A;  3IAJ A;  3I9H A;  3LWK A;  1HA4 A;  1ZWO A;  5HT9 A;  1DSL A;  3SNY A;  4W9B A;  4FD9 A;  3SNZ A;  1A5D A;  1HK0 X;  3SO1 A;  4NI3 A;  1YHP A;  4JGF A;  2KP5 A; 
#chains in the Genus database with same CATH topology
 3SO0 A;  4W9A A;  1AG4 A;  1PRS A;  1ZIR A;  2NBR A;  2BB2 A;  2JDF A;  3LWK A;  1ZWO A;  4W9B A;  1A5D A;  4NI3 A;  1YHP A;  4JGF A;  2KP5 A;  3QK3 A;  1GCS A;  4EL6 A;  1A45 A;  1H4A X;  1I5I A;  2M3U A;  1HDF A;  2M3T A;  2DAD A;  1M8U A;  4PSR A;  1C01 A;  2G98 A;  4GCR A;  1ZIE A;  1GAM A;  2BV2 A;  5HT9 A;  1HA4 A;  3SO1 A;  1HK0 X;  1BHU A;  1YTQ A;  5HT8 A;  2JDG A;  4GR7 A;  1ZGT A;  2B1O A;  1NPS A;  1WKT A;  1E7N A;  1G6E A;  3HZ2 A;  1F53 A;  2K1X A;  1BD7 A;  1ZWM A;  2V2U A;  2A5M A;  4PSP A;  3I9H A;  1DSL A;  3SNY A;  4FD9 A;  3UJZ A;  1GH5 A;  3ENT A;  1PRR A;  3CW3 A;  1A7H A;  1ELP A;  3HZB A;  2M3C A;  1ZIQ A;  2K1W A;  4AKA A;  1BLB A;  1AMM A;  3ENU A;  4IAU A;  1OKI A;  2KFB A;  3IAJ A;  3SNZ A; 
#chains in the Genus database with same CATH homology
 3QK3 A;  1GCS A;  3ENT A;  1YTQ A;  3SO0 A;  4EL6 A;  5HT8 A;  2JDG A;  4W9A A;  1PRR A;  1AG4 A;  4GR7 A;  3CW3 A;  1A45 A;  1A7H A;  1ELP A;  1I5I A;  1H4A X;  1ZGT A;  2B1O A;  1PRS A;  2M3U A;  1NPS A;  1HDF A;  2M3T A;  1ZIR A;  1E7N A;  1ZIQ A;  2DAD A;  2M3C A;  3HZ2 A;  3HZB A;  2NBR A;  2K1W A;  4AKA A;  1M8U A;  2K1X A;  4PSR A;  1BD7 A;  1AMM A;  1BLB A;  1ZWM A;  3ENU A;  2G98 A;  2V2U A;  4IAU A;  2BB2 A;  1OKI A;  4GCR A;  2JDF A;  2A5M A;  4PSP A;  2KFB A;  1ZIE A;  1GAM A;  2BV2 A;  3IAJ A;  3I9H A;  3LWK A;  1HA4 A;  1ZWO A;  5HT9 A;  1DSL A;  3SNY A;  4W9B A;  4FD9 A;  3SNZ A;  1A5D A;  1HK0 X;  3SO1 A;  4NI3 A;  1YHP A;  4JGF A;  2KP5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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