3LL1 | Genus

Total Genus 23

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	23
sequence length	122
structure length	122
Chain Sequence	SSTHRKFGGSGGSPFSGSGLSSIAVRSGSYLDAIIIDGVHHGGSGGNLSPTFTFGSGEYISNMTIRSGDYIDNISFETNMGRRFGPYGGSGGSANTLSNVKVIQINGSAGDYLDSLDIYYDN

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 122 atoms

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122 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Monomerization of viral entry inhibitor griffithsin elucidates the relationship between multivalent binding to carbohydrates and anti-HIV activity. pubmed doi rcsb
molecule keywords	Griffithsin
molecule tags	Sugar binding protein
source organism	Griffithsia
total genus	23
structure length	122
sequence length	122
ec nomenclature
pdb deposition date	2010-01-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	3ll1A00

3VZFA 5J50A 4DDNA 5J4TA 4MQ0A 3LL0A 1WS4A 3VY6A 1VBOA 1WS5A 4GX7A 4R6PA 1J4TA 1TP8A 1C3KA 3LM1A 1J4UA 1KU8A 1OUWA 1VBPA 1UGWC 3VZEA 1J4SA 2BMZA 2NUOA 1WS4C 1JOTA 3R52A 2GUXA 3O44A 1C3NA 1WS5C 5BN6E 3AQGA 4AKBA 3APAA 4PIFA 3MIUA 3WOBA 5AV7A 3MIVA 3LL2A 3LL1A 1UH1A 3P8SA 3R50A 2BMYA 1UH0A 5J4XA 3MITA 1XEZA 1UGYA 3R51A 3WOCA 4PIUA 4R6NA 4PITA 5JM1A 4R6QA 4PIKA 2BN0A 1PXDA 1KUJA 1TOQA 5J51A 1X1VA 1UGYC 4R6OA 1C3MA 3LKYA 2JZ4A 2GUEA 1ZGSA 3LLYA 2GUDA 3LLZA 1XXRA 3VZGA 1JACA 4AKCA 1XXQA 2HYRA 4AK4A 2NU5A 4R6RA 4WOGA 1ZGRA 3VY7A 1UGXA 1M26A 4AKDA 2GTYA 5EXGA 2GUCA 2HYQA 1UGWA
chains in the Genus database with same CATH superfamily

3VZFA 5J50A 4QX0A 4DDNA 1DLCA 5J4TA 4MQ0A 3LL0A 1WS4A 3VY6A 1VBOA 1WS5A 4GX7A 4R6PA 1J4TA 1TP8A 4QX3A 1C3KA 3LM1A 1J4UA 1KU8A 1OUWA 1VBPA 1UGWC 3VZEA 1J4SA 2BMZA 2NUOA 1WS4C 1JOTA 3R52A 2GUXA 3O44A 1C3NA 4QX1A 1WS5C 2QP2A 5BN6E 3AQGA 4AKBA 3APAA 4PIFA 3MIUA 3WOBA 5AV7A 4ARYA 3MIVA 3LL2A 3LL1A 1UH1A 3P8SA 3R50A 2BMYA 1UH0A 5J4XA 3MITA 1XEZA 1UGYA 1JI6A 3R51A 3WOCA 4PIUA 4R6NA 4PITA 5JM1A 2C9KA 4R6QA 4MOAA 4PIKA 2BN0A 1PXDA 1KUJA 1TOQA 4D8MA 5J51A 1X1VA 1UGYC 4R6OA 1C3MA 3LKYA 4QX2A 2JZ4A 1CIYA 3EB7A 4ARXA 2GUEA 1ZGSA 3LLYA 2GUDA 3LLZA 3TOWA 1XXRA 3VZGA 1JACA 4AKCA 1I5PA 1XXQA 2HYRA 4AK4A 2NU5A 4R6RA 1W99A 4WOGA 1ZGRA 3VY7A 4W8JA 1UGXA 1M26A 1VMOA 4AKDA 2GTYA 5EXGA 2GUCA 2HYQA 1UGWA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3VZF A;  5J50 A;  4DDN A;  5J4T A;  4MQ0 A;  3LL0 A;  1WS4 A;  3VY6 A;  1VBO A;  1WS5 A;  4GX7 A;  4R6P A;  1J4T A;  1TP8 A;  1C3K A;  3LM1 A;  1J4U A;  1KU8 A;  1OUW A;  1VBP A;  1UGW C;  3VZE A;  1J4S A;  2BMZ A;  2NUO A;  1WS4 C;  1JOT A;  3R52 A;  2GUX A;  3O44 A;  1C3N A;  1WS5 C;  5BN6 E;  3AQG A;  4AKB A;  3APA A;  4PIF A;  3MIU A;  3WOB A;  5AV7 A;  3MIV A;  3LL2 A;  3LL1 A;  1UH1 A;  3P8S A;  3R50 A;  2BMY A;  1UH0 A;  5J4X A;  3MIT A;  1XEZ A;  1UGY A;  3R51 A;  3WOC A;  4PIU A;  4R6N A;  4PIT A;  5JM1 A;  4R6Q A;  4PIK A;  2BN0 A;  1PXD A;  1KUJ A;  1TOQ A;  5J51 A;  1X1V A;  1UGY C;  4R6O A;  1C3M A;  3LKY A;  2JZ4 A;  2GUE A;  1ZGS A;  3LLY A;  2GUD A;  3LLZ A;  1XXR A;  3VZG A;  1JAC A;  4AKC A;  1XXQ A;  2HYR A;  4AK4 A;  2NU5 A;  4R6R A;  4WOG A;  1ZGR A;  3VY7 A;  1UGX A;  1M26 A;  4AKD A;  2GTY A;  5EXG A;  2GUC A;  2HYQ A;  1UGW A; 
#chains in the Genus database with same CATH topology
 3VZF A;  5J50 A;  4QX0 A;  4DDN A;  1DLC A;  5J4T A;  4MQ0 A;  3LL0 A;  1WS4 A;  3VY6 A;  1VBO A;  1WS5 A;  4GX7 A;  4R6P A;  1J4T A;  1TP8 A;  4QX3 A;  1C3K A;  3LM1 A;  1J4U A;  1KU8 A;  1OUW A;  1VBP A;  1UGW C;  3VZE A;  1J4S A;  2BMZ A;  2NUO A;  1WS4 C;  1JOT A;  3R52 A;  2GUX A;  3O44 A;  1C3N A;  4QX1 A;  1WS5 C;  2QP2 A;  5BN6 E;  3AQG A;  4AKB A;  3APA A;  4PIF A;  3MIU A;  3WOB A;  5AV7 A;  4ARY A;  3MIV A;  3LL2 A;  3LL1 A;  1UH1 A;  3P8S A;  3R50 A;  2BMY A;  1UH0 A;  5J4X A;  3MIT A;  1XEZ A;  1UGY A;  1JI6 A;  3R51 A;  3WOC A;  4PIU A;  4R6N A;  4PIT A;  5JM1 A;  2C9K A;  4R6Q A;  4MOA A;  4PIK A;  2BN0 A;  1PXD A;  1KUJ A;  1TOQ A;  4D8M A;  5J51 A;  1X1V A;  1UGY C;  4R6O A;  1C3M A;  3LKY A;  4QX2 A;  2JZ4 A;  1CIY A;  3EB7 A;  4ARX A;  2GUE A;  1ZGS A;  3LLY A;  2GUD A;  3LLZ A;  3TOW A;  1XXR A;  3VZG A;  1JAC A;  4AKC A;  1I5P A;  1XXQ A;  2HYR A;  4AK4 A;  2NU5 A;  4R6R A;  1W99 A;  4WOG A;  1ZGR A;  3VY7 A;  4W8J A;  1UGX A;  1M26 A;  1VMO A;  4AKD A;  2GTY A;  5EXG A;  2GUC A;  2HYQ A;  1UGW A; 
#chains in the Genus database with same CATH homology
 3VZF A;  5J50 A;  4DDN A;  5J4T A;  4MQ0 A;  3LL0 A;  1WS4 A;  3VY6 A;  1VBO A;  1WS5 A;  4GX7 A;  4R6P A;  1J4T A;  1TP8 A;  1C3K A;  3LM1 A;  1J4U A;  1KU8 A;  1OUW A;  1VBP A;  1UGW C;  3VZE A;  1J4S A;  2BMZ A;  2NUO A;  1WS4 C;  1JOT A;  3R52 A;  2GUX A;  3O44 A;  1C3N A;  1WS5 C;  5BN6 E;  3AQG A;  4AKB A;  3APA A;  4PIF A;  3MIU A;  3WOB A;  5AV7 A;  3MIV A;  3LL2 A;  3LL1 A;  1UH1 A;  3P8S A;  3R50 A;  2BMY A;  1UH0 A;  5J4X A;  3MIT A;  1XEZ A;  1UGY A;  3R51 A;  3WOC A;  4PIU A;  4R6N A;  4PIT A;  5JM1 A;  4R6Q A;  4PIK A;  2BN0 A;  1PXD A;  1KUJ A;  1TOQ A;  5J51 A;  1X1V A;  1UGY C;  4R6O A;  1C3M A;  3LKY A;  2JZ4 A;  2GUE A;  1ZGS A;  3LLY A;  2GUD A;  3LLZ A;  1XXR A;  3VZG A;  1JAC A;  4AKC A;  1XXQ A;  2HYR A;  4AK4 A;  2NU5 A;  4R6R A;  4WOG A;  1ZGR A;  3VY7 A;  1UGX A;  1M26 A;  4AKD A;  2GTY A;  5EXG A;  2GUC A;  2HYQ A;  1UGW A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3LL1A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations