3LLYA

Crystal structure analysis of maclura pomifera agglutinin
Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
133
structure length
133
Chain Sequence
GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-6)S11 (124-132)S3 (25-34)EMPTYS10 (112-120)TIV2 (33-36)S2 (11-19)TI1 (20-23)TIV1 (21-24)S7 (78-88)TVIa1 (59-62)TI2 (60-63)TIV4 (88-91)S8 (92-97)TVIII1 (61-64)S6 (65-75)TVIII2 (108-111)TIV5 (120-123)S4 (37-40)S5 (52-57)S9 (102-107)Updating...
connected with : NaN
molecule tags Sugar binding protein
publication title Characterization of the secondary binding sites of Maclura pomifera agglutinin by glycan array and crystallographic analyses.
pubmed doi rcsb
molecule keywords Agglutinin alpha chain
total genus 26
structure length 133
sequence length 133
ec nomenclature
pdb deposition date 2010-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3llyA00
3R50A 1J4TA 1TOQA 3VZEA 4PIKA 4AKDA 1ZGSA 1J4UA 1UGWA 3R51A 1UGYC 2GUCA 3VY7A 4R6NA 2NUOA 4PIFA 3MITA 4WOGA 1XEZA 5BN6E 3LM1A 3MIVA 2GTYA 1VBOA 1KU8A 3P8SA 1UGYA 1M26A 2BMYA 3WOCA 2GUEA 1PXDA 3VZFA 1J4SA 4MQ0A 3MIUA 4AK4A 4R6RA 5EXGA 1TP8A 5JM1A 2GUXA 3LL2A 5J51A 5J4TA 3R52A 3LL1A 4R6QA 3O44A 4PITA 1C3MA 1WS5C 1X1VA 3LLZA 4PIUA 3VZGA 3LKYA 3LLYA 4AKBA 1JOTA 5J4XA 1ZGRA 1WS4C 3VY6A 5AV7A 1OUWA 1WS5A 4R6PA 1UGXA 1XXQA 2HYRA 4R6OA 3APAA 4AKCA 3LL0A 1C3NA 1C3KA 3AQGA 2NU5A 1UGWC 4DDNA 5J50A 1KUJA 2BN0A 4GX7A 3WOBA 1JACA 1UH1A 1WS4A 1XXRA 2BMZA 2JZ4A 1VBPA 1UH0A 2HYQA 2GUDA
chains in the Genus database with same CATH superfamily
3R50A 1J4TA 1TOQA 3VZEA 4PIKA 4AKDA 1ZGSA 1J4UA 4ARYA 1UGWA 3R51A 1UGYC 2GUCA 3VY7A 4R6NA 2NUOA 4PIFA 3MITA 4WOGA 1XEZA 5BN6E 3LM1A 1I5PA 3MIVA 4D8MA 2GTYA 1VBOA 1KU8A 3P8SA 1VMOA 1UGYA 1M26A 2BMYA 3WOCA 2GUEA 1PXDA 3VZFA 1J4SA 4MQ0A 4QX3A 3MIUA 4AK4A 4R6RA 5EXGA 1TP8A 5JM1A 4ARXA 1W99A 3TOWA 2GUXA 3LL2A 5J51A 5J4TA 3R52A 3LL1A 4QX2A 4R6QA 3O44A 4PITA 1C3MA 1WS5C 1X1VA 3LLZA 4QX1A 2C9KA 4PIUA 2QP2A 3VZGA 3LKYA 3LLYA 4AKBA 1JOTA 5J4XA 1ZGRA 4W8JA 1WS4C 3VY6A 5AV7A 1OUWA 4MOAA 1WS5A 4R6PA 3EB7A 1UGXA 1XXQA 2HYRA 1DLCA 4R6OA 1JI6A 3APAA 4AKCA 1CIYA 3LL0A 1C3NA 1C3KA 3AQGA 4QX0A 2NU5A 1UGWC 4DDNA 5J50A 1KUJA 2BN0A 4GX7A 3WOBA 1JACA 1UH1A 1WS4A 1XXRA 2BMZA 2JZ4A 1VBPA 1UH0A 2HYQA 2GUDA
chains in the Genus database with same CATH topology
3R50A 1J4TA 1TOQA 3VZEA 4PIKA 4AKDA 1ZGSA 1J4UA 1UGWA 3R51A 1UGYC 2GUCA 3VY7A 4R6NA 2NUOA 4PIFA 3MITA 4WOGA 1XEZA 5BN6E 3LM1A 3MIVA 2GTYA 1VBOA 1KU8A 3P8SA 1UGYA 1M26A 2BMYA 3WOCA 2GUEA 1PXDA 3VZFA 1J4SA 4MQ0A 3MIUA 4AK4A 4R6RA 5EXGA 1TP8A 5JM1A 2GUXA 3LL2A 5J51A 5J4TA 3R52A 3LL1A 4R6QA 3O44A 4PITA 1C3MA 1WS5C 1X1VA 3LLZA 4PIUA 3VZGA 3LKYA 3LLYA 4AKBA 1JOTA 5J4XA 1ZGRA 1WS4C 3VY6A 5AV7A 1OUWA 1WS5A 4R6PA 1UGXA 1XXQA 2HYRA 4R6OA 3APAA 4AKCA 3LL0A 1C3NA 1C3KA 3AQGA 2NU5A 1UGWC 4DDNA 5J50A 1KUJA 2BN0A 4GX7A 3WOBA 1JACA 1UH1A 1WS4A 1XXRA 2BMZA 2JZ4A 1VBPA 1UH0A 2HYQA 2GUDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3R50 A;  1J4T A;  1TOQ A;  3VZE A;  4PIK A;  4AKD A;  1ZGS A;  1J4U A;  1UGW A;  3R51 A;  1UGY C;  2GUC A;  3VY7 A;  4R6N A;  2NUO A;  4PIF A;  3MIT A;  4WOG A;  1XEZ A;  5BN6 E;  3LM1 A;  3MIV A;  2GTY A;  1VBO A;  1KU8 A;  3P8S A;  1UGY A;  1M26 A;  2BMY A;  3WOC A;  2GUE A;  1PXD A;  3VZF A;  1J4S A;  4MQ0 A;  3MIU A;  4AK4 A;  4R6R A;  5EXG A;  1TP8 A;  5JM1 A;  2GUX A;  3LL2 A;  5J51 A;  5J4T A;  3R52 A;  3LL1 A;  4R6Q A;  3O44 A;  4PIT A;  1C3M A;  1WS5 C;  1X1V A;  3LLZ A;  4PIU A;  3VZG A;  3LKY A;  3LLY A;  4AKB A;  1JOT A;  5J4X A;  1ZGR A;  1WS4 C;  3VY6 A;  5AV7 A;  1OUW A;  1WS5 A;  4R6P A;  1UGX A;  1XXQ A;  2HYR A;  4R6O A;  3APA A;  4AKC A;  3LL0 A;  1C3N A;  1C3K A;  3AQG A;  2NU5 A;  1UGW C;  4DDN A;  5J50 A;  1KUJ A;  2BN0 A;  4GX7 A;  3WOB A;  1JAC A;  1UH1 A;  1WS4 A;  1XXR A;  2BMZ A;  2JZ4 A;  1VBP A;  1UH0 A;  2HYQ A;  2GUD A; 
#chains in the Genus database with same CATH topology
 3R50 A;  1J4T A;  1TOQ A;  3VZE A;  4PIK A;  4AKD A;  1ZGS A;  1J4U A;  4ARY A;  1UGW A;  3R51 A;  1UGY C;  2GUC A;  3VY7 A;  4R6N A;  2NUO A;  4PIF A;  3MIT A;  4WOG A;  1XEZ A;  5BN6 E;  3LM1 A;  1I5P A;  3MIV A;  4D8M A;  2GTY A;  1VBO A;  1KU8 A;  3P8S A;  1VMO A;  1UGY A;  1M26 A;  2BMY A;  3WOC A;  2GUE A;  1PXD A;  3VZF A;  1J4S A;  4MQ0 A;  4QX3 A;  3MIU A;  4AK4 A;  4R6R A;  5EXG A;  1TP8 A;  5JM1 A;  4ARX A;  1W99 A;  3TOW A;  2GUX A;  3LL2 A;  5J51 A;  5J4T A;  3R52 A;  3LL1 A;  4QX2 A;  4R6Q A;  3O44 A;  4PIT A;  1C3M A;  1WS5 C;  1X1V A;  3LLZ A;  4QX1 A;  2C9K A;  4PIU A;  2QP2 A;  3VZG A;  3LKY A;  3LLY A;  4AKB A;  1JOT A;  5J4X A;  1ZGR A;  4W8J A;  1WS4 C;  3VY6 A;  5AV7 A;  1OUW A;  4MOA A;  1WS5 A;  4R6P A;  3EB7 A;  1UGX A;  1XXQ A;  2HYR A;  1DLC A;  4R6O A;  1JI6 A;  3APA A;  4AKC A;  1CIY A;  3LL0 A;  1C3N A;  1C3K A;  3AQG A;  4QX0 A;  2NU5 A;  1UGW C;  4DDN A;  5J50 A;  1KUJ A;  2BN0 A;  4GX7 A;  3WOB A;  1JAC A;  1UH1 A;  1WS4 A;  1XXR A;  2BMZ A;  2JZ4 A;  1VBP A;  1UH0 A;  2HYQ A;  2GUD A; 
#chains in the Genus database with same CATH homology
 3R50 A;  1J4T A;  1TOQ A;  3VZE A;  4PIK A;  4AKD A;  1ZGS A;  1J4U A;  1UGW A;  3R51 A;  1UGY C;  2GUC A;  3VY7 A;  4R6N A;  2NUO A;  4PIF A;  3MIT A;  4WOG A;  1XEZ A;  5BN6 E;  3LM1 A;  3MIV A;  2GTY A;  1VBO A;  1KU8 A;  3P8S A;  1UGY A;  1M26 A;  2BMY A;  3WOC A;  2GUE A;  1PXD A;  3VZF A;  1J4S A;  4MQ0 A;  3MIU A;  4AK4 A;  4R6R A;  5EXG A;  1TP8 A;  5JM1 A;  2GUX A;  3LL2 A;  5J51 A;  5J4T A;  3R52 A;  3LL1 A;  4R6Q A;  3O44 A;  4PIT A;  1C3M A;  1WS5 C;  1X1V A;  3LLZ A;  4PIU A;  3VZG A;  3LKY A;  3LLY A;  4AKB A;  1JOT A;  5J4X A;  1ZGR A;  1WS4 C;  3VY6 A;  5AV7 A;  1OUW A;  1WS5 A;  4R6P A;  1UGX A;  1XXQ A;  2HYR A;  4R6O A;  3APA A;  4AKC A;  3LL0 A;  1C3N A;  1C3K A;  3AQG A;  2NU5 A;  1UGW C;  4DDN A;  5J50 A;  1KUJ A;  2BN0 A;  4GX7 A;  3WOB A;  1JAC A;  1UH1 A;  1WS4 A;  1XXR A;  2BMZ A;  2JZ4 A;  1VBP A;  1UH0 A;  2HYQ A;  2GUD A; 
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