3LLZA

Crystal structure analysis of maclura pomifera agglutinin complex with gal-beta-1,3-galnac
Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
133
structure length
133
Chain Sequence
GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-5)S11 (124-132)S4 (37-44)TIV2 (33-36)S2 (11-19)TI1 (20-23)TIV1 (21-24)S7 (78-88)S3 (25-34)TVIa1 (59-62)TIV3 (60-63)TI2 (88-91)S8 (92-97)TVIII1 (61-64)S6 (65-75)TVIII2 (108-111)TIV5 (120-123)S10 (112-120)S9 (102-107)S5 (52-57)Updating...
connected with : NaN
molecule tags Sugar binding protein
publication title Characterization of the secondary binding sites of Maclura pomifera agglutinin by glycan array and crystallographic analyses.
pubmed doi rcsb
molecule keywords Agglutinin alpha chain
total genus 29
structure length 133
sequence length 133
ec nomenclature
pdb deposition date 2010-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3llzA00
3LM1A 4PIKA 4AKDA 4R6QA 3AQGA 3LL0A 1XXQA 3MIUA 4AKBA 4R6RA 1WS5A 5BN6E 1KUJA 1WS4A 2BMYA 2BN0A 2GUXA 4PIUA 1TOQA 3WOCA 1PXDA 1UGWC 1UGXA 1UGYC 2HYQA 1X1VA 3R50A 5J51A 3WOBA 3VZEA 2NUOA 1ZGSA 3R52A 2GUDA 3LKYA 1C3NA 5JM1A 1ZGRA 3VY7A 1UGWA 4PITA 1UGYA 4DDNA 3O44A 4GX7A 3LLYA 5AV7A 4AK4A 3MITA 2HYRA 3VZFA 2JZ4A 3LL1A 1TP8A 1J4UA 5J50A 1VBPA 1JOTA 2GTYA 2NU5A 3APAA 3VZGA 3LL2A 4R6OA 3MIVA 5EXGA 5J4XA 4R6NA 1VBOA 1C3KA 2GUCA 2GUEA 1WS4C 5J4TA 1KU8A 1C3MA 1J4TA 4WOGA 1JACA 4PIFA 1OUWA 1UH1A 3LLZA 1XXRA 2BMZA 4MQ0A 4R6PA 1UH0A 1XEZA 3VY6A 1J4SA 1M26A 3R51A 4AKCA 3P8SA 1WS5C
chains in the Genus database with same CATH superfamily
3LM1A 4ARYA 4PIKA 4AKDA 4R6QA 4QX0A 3AQGA 3LL0A 1XXQA 3MIUA 4AKBA 4R6RA 1WS5A 5BN6E 1KUJA 1WS4A 3TOWA 2BMYA 2BN0A 2GUXA 4PIUA 1TOQA 3WOCA 1PXDA 1UGWC 1UGXA 1UGYC 2HYQA 1X1VA 3R50A 5J51A 3WOBA 4MOAA 3VZEA 2QP2A 2NUOA 1ZGSA 3R52A 1I5PA 2GUDA 3LKYA 1JI6A 1C3NA 5JM1A 1ZGRA 3VY7A 3EB7A 1UGWA 4PITA 1UGYA 4DDNA 3O44A 4GX7A 3LLYA 5AV7A 4AK4A 3MITA 1DLCA 2HYRA 3VZFA 2JZ4A 3LL1A 1TP8A 1J4UA 5J50A 1VBPA 1CIYA 1JOTA 2GTYA 2NU5A 3APAA 4ARXA 3VZGA 3LL2A 4R6OA 3MIVA 5EXGA 1VMOA 5J4XA 4R6NA 4QX3A 1VBOA 1W99A 1C3KA 4W8JA 2GUCA 2GUEA 1WS4C 5J4TA 1KU8A 1C3MA 1J4TA 4WOGA 1JACA 4PIFA 1OUWA 1UH1A 3LLZA 1XXRA 4D8MA 2BMZA 4MQ0A 4R6PA 1UH0A 1XEZA 4QX2A 2C9KA 3VY6A 1J4SA 4QX1A 1M26A 3R51A 4AKCA 3P8SA 1WS5C
chains in the Genus database with same CATH topology
3LM1A 4PIKA 4AKDA 4R6QA 3AQGA 3LL0A 1XXQA 3MIUA 4AKBA 4R6RA 1WS5A 5BN6E 1KUJA 1WS4A 2BMYA 2BN0A 2GUXA 4PIUA 1TOQA 3WOCA 1PXDA 1UGWC 1UGXA 1UGYC 2HYQA 1X1VA 3R50A 5J51A 3WOBA 3VZEA 2NUOA 1ZGSA 3R52A 2GUDA 3LKYA 1C3NA 5JM1A 1ZGRA 3VY7A 1UGWA 4PITA 1UGYA 4DDNA 3O44A 4GX7A 3LLYA 5AV7A 4AK4A 3MITA 2HYRA 3VZFA 2JZ4A 3LL1A 1TP8A 1J4UA 5J50A 1VBPA 1JOTA 2GTYA 2NU5A 3APAA 3VZGA 3LL2A 4R6OA 3MIVA 5EXGA 5J4XA 4R6NA 1VBOA 1C3KA 2GUCA 2GUEA 1WS4C 5J4TA 1KU8A 1C3MA 1J4TA 4WOGA 1JACA 4PIFA 1OUWA 1UH1A 3LLZA 1XXRA 2BMZA 4MQ0A 4R6PA 1UH0A 1XEZA 3VY6A 1J4SA 1M26A 3R51A 4AKCA 3P8SA 1WS5C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LM1 A;  4PIK A;  4AKD A;  4R6Q A;  3AQG A;  3LL0 A;  1XXQ A;  3MIU A;  4AKB A;  4R6R A;  1WS5 A;  5BN6 E;  1KUJ A;  1WS4 A;  2BMY A;  2BN0 A;  2GUX A;  4PIU A;  1TOQ A;  3WOC A;  1PXD A;  1UGW C;  1UGX A;  1UGY C;  2HYQ A;  1X1V A;  3R50 A;  5J51 A;  3WOB A;  3VZE A;  2NUO A;  1ZGS A;  3R52 A;  2GUD A;  3LKY A;  1C3N A;  5JM1 A;  1ZGR A;  3VY7 A;  1UGW A;  4PIT A;  1UGY A;  4DDN A;  3O44 A;  4GX7 A;  3LLY A;  5AV7 A;  4AK4 A;  3MIT A;  2HYR A;  3VZF A;  2JZ4 A;  3LL1 A;  1TP8 A;  1J4U A;  5J50 A;  1VBP A;  1JOT A;  2GTY A;  2NU5 A;  3APA A;  3VZG A;  3LL2 A;  4R6O A;  3MIV A;  5EXG A;  5J4X A;  4R6N A;  1VBO A;  1C3K A;  2GUC A;  2GUE A;  1WS4 C;  5J4T A;  1KU8 A;  1C3M A;  1J4T A;  4WOG A;  1JAC A;  4PIF A;  1OUW A;  1UH1 A;  3LLZ A;  1XXR A;  2BMZ A;  4MQ0 A;  4R6P A;  1UH0 A;  1XEZ A;  3VY6 A;  1J4S A;  1M26 A;  3R51 A;  4AKC A;  3P8S A;  1WS5 C; 
#chains in the Genus database with same CATH topology
 3LM1 A;  4ARY A;  4PIK A;  4AKD A;  4R6Q A;  4QX0 A;  3AQG A;  3LL0 A;  1XXQ A;  3MIU A;  4AKB A;  4R6R A;  1WS5 A;  5BN6 E;  1KUJ A;  1WS4 A;  3TOW A;  2BMY A;  2BN0 A;  2GUX A;  4PIU A;  1TOQ A;  3WOC A;  1PXD A;  1UGW C;  1UGX A;  1UGY C;  2HYQ A;  1X1V A;  3R50 A;  5J51 A;  3WOB A;  4MOA A;  3VZE A;  2QP2 A;  2NUO A;  1ZGS A;  3R52 A;  1I5P A;  2GUD A;  3LKY A;  1JI6 A;  1C3N A;  5JM1 A;  1ZGR A;  3VY7 A;  3EB7 A;  1UGW A;  4PIT A;  1UGY A;  4DDN A;  3O44 A;  4GX7 A;  3LLY A;  5AV7 A;  4AK4 A;  3MIT A;  1DLC A;  2HYR A;  3VZF A;  2JZ4 A;  3LL1 A;  1TP8 A;  1J4U A;  5J50 A;  1VBP A;  1CIY A;  1JOT A;  2GTY A;  2NU5 A;  3APA A;  4ARX A;  3VZG A;  3LL2 A;  4R6O A;  3MIV A;  5EXG A;  1VMO A;  5J4X A;  4R6N A;  4QX3 A;  1VBO A;  1W99 A;  1C3K A;  4W8J A;  2GUC A;  2GUE A;  1WS4 C;  5J4T A;  1KU8 A;  1C3M A;  1J4T A;  4WOG A;  1JAC A;  4PIF A;  1OUW A;  1UH1 A;  3LLZ A;  1XXR A;  4D8M A;  2BMZ A;  4MQ0 A;  4R6P A;  1UH0 A;  1XEZ A;  4QX2 A;  2C9K A;  3VY6 A;  1J4S A;  4QX1 A;  1M26 A;  3R51 A;  4AKC A;  3P8S A;  1WS5 C; 
#chains in the Genus database with same CATH homology
 3LM1 A;  4PIK A;  4AKD A;  4R6Q A;  3AQG A;  3LL0 A;  1XXQ A;  3MIU A;  4AKB A;  4R6R A;  1WS5 A;  5BN6 E;  1KUJ A;  1WS4 A;  2BMY A;  2BN0 A;  2GUX A;  4PIU A;  1TOQ A;  3WOC A;  1PXD A;  1UGW C;  1UGX A;  1UGY C;  2HYQ A;  1X1V A;  3R50 A;  5J51 A;  3WOB A;  3VZE A;  2NUO A;  1ZGS A;  3R52 A;  2GUD A;  3LKY A;  1C3N A;  5JM1 A;  1ZGR A;  3VY7 A;  1UGW A;  4PIT A;  1UGY A;  4DDN A;  3O44 A;  4GX7 A;  3LLY A;  5AV7 A;  4AK4 A;  3MIT A;  2HYR A;  3VZF A;  2JZ4 A;  3LL1 A;  1TP8 A;  1J4U A;  5J50 A;  1VBP A;  1JOT A;  2GTY A;  2NU5 A;  3APA A;  3VZG A;  3LL2 A;  4R6O A;  3MIV A;  5EXG A;  5J4X A;  4R6N A;  1VBO A;  1C3K A;  2GUC A;  2GUE A;  1WS4 C;  5J4T A;  1KU8 A;  1C3M A;  1J4T A;  4WOG A;  1JAC A;  4PIF A;  1OUW A;  1UH1 A;  3LLZ A;  1XXR A;  2BMZ A;  4MQ0 A;  4R6P A;  1UH0 A;  1XEZ A;  3VY6 A;  1J4S A;  1M26 A;  3R51 A;  4AKC A;  3P8S A;  1WS5 C; 
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