3LM1A

Crystal structure analysis of maclura pomifera agglutinin complex with p-nitrophenyl-galnac
Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
133
structure length
133
Chain Sequence
GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-5)S11 (124-132)S4 (37-44)TIV2 (33-36)S2 (11-19)TI1 (20-23)TIV1 (21-24)S7 (78-88)S3 (25-34)S10 (112-120)TII'1 (60-63)S8 (92-97)TI2 (88-91)S6 (65-75)TVIII1 (108-111)TIV5 (120-123)TIV3 (59-62)S9 (102-107)S5 (52-57)Updating...
connected with : NaN
publication title Characterization of the secondary binding sites of Maclura pomifera agglutinin by glycan array and crystallographic analyses.
pubmed doi rcsb
molecule keywords Agglutinin alpha chain
molecule tags Sugar binding protein
total genus 29
structure length 133
sequence length 133
chains with identical sequence C, E, G, I, K, M, O
ec nomenclature
pdb deposition date 2010-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3lm1A00
1UGYC 2BMZA 3LL2A 1C3KA 4PITA 1C3NA 1WS5A 1JOTA 4PIKA 5J4XA 3LLZA 4DDNA 2BN0A 4GX7A 2BMYA 1TP8A 2NUOA 3MITA 3MIUA 1KU8A 2NU5A 4PIFA 3VZGA 1WS5C 5AV7A 4R6OA 3WOCA 4AKBA 3VY6A 2GTYA 3LL0A 1M26A 5J51A 4R6NA 4WOGA 1OUWA 3O44A 1XXQA 3LLYA 1J4UA 2HYQA 3LKYA 4R6RA 4PIUA 3VY7A 1X1VA 1C3MA 3R52A 1JACA 4AKDA 2GUXA 1UGWA 3LM1A 1ZGRA 5J50A 1UH1A 1J4SA 1XXRA 2GUDA 3MIVA 1VBPA 5BN6E 1PXDA 4AKCA 1WS4A 1KUJA 3WOBA 5EXGA 4R6PA 1UGWC 1J4TA 2HYRA 3VZFA 3P8SA 1TOQA 1UGYA 5JM1A 3VZEA 2JZ4A 1VBOA 5J4TA 1WS4C 3APAA 1XEZA 3R50A 1UGXA 1UH0A 2GUEA 4R6QA 2GUCA 1ZGSA 3R51A 3LL1A 3AQGA 4MQ0A 4AK4A
chains in the Genus database with same CATH superfamily
1UGYC 2BMZA 3LL2A 1C3KA 4PITA 1C3NA 4ARXA 2C9KA 1WS5A 1JOTA 4PIKA 5J4XA 4QX2A 3LLZA 4DDNA 2BN0A 4GX7A 2BMYA 1TP8A 2NUOA 3MITA 3MIUA 1KU8A 1VMOA 2NU5A 4PIFA 1JI6A 3VZGA 1WS5C 5AV7A 4R6OA 3WOCA 4AKBA 1DLCA 2QP2A 3VY6A 2GTYA 3LL0A 1M26A 5J51A 4R6NA 4WOGA 1OUWA 3O44A 1XXQA 3LLYA 1I5PA 1J4UA 2HYQA 3LKYA 4QX0A 4R6RA 4PIUA 3VY7A 1X1VA 1C3MA 3R52A 1JACA 4AKDA 2GUXA 1UGWA 4QX3A 3LM1A 4QX1A 1ZGRA 4ARYA 5J50A 1UH1A 4MOAA 1J4SA 1XXRA 2GUDA 3MIVA 1VBPA 5BN6E 1PXDA 4AKCA 1WS4A 1KUJA 3WOBA 5EXGA 4R6PA 4D8MA 1UGWC 3TOWA 1J4TA 2HYRA 3EB7A 4W8JA 3VZFA 3P8SA 1TOQA 1UGYA 5JM1A 3VZEA 2JZ4A 1VBOA 5J4TA 1W99A 1WS4C 3APAA 1XEZA 3R50A 1UGXA 1UH0A 2GUEA 1CIYA 4R6QA 2GUCA 1ZGSA 3R51A 3LL1A 3AQGA 4MQ0A 4AK4A
chains in the Genus database with same CATH topology
1UGYC 2BMZA 3LL2A 1C3KA 4PITA 1C3NA 1WS5A 1JOTA 4PIKA 5J4XA 3LLZA 4DDNA 2BN0A 4GX7A 2BMYA 1TP8A 2NUOA 3MITA 3MIUA 1KU8A 2NU5A 4PIFA 3VZGA 1WS5C 5AV7A 4R6OA 3WOCA 4AKBA 3VY6A 2GTYA 3LL0A 1M26A 5J51A 4R6NA 4WOGA 1OUWA 3O44A 1XXQA 3LLYA 1J4UA 2HYQA 3LKYA 4R6RA 4PIUA 3VY7A 1X1VA 1C3MA 3R52A 1JACA 4AKDA 2GUXA 1UGWA 3LM1A 1ZGRA 5J50A 1UH1A 1J4SA 1XXRA 2GUDA 3MIVA 1VBPA 5BN6E 1PXDA 4AKCA 1WS4A 1KUJA 3WOBA 5EXGA 4R6PA 1UGWC 1J4TA 2HYRA 3VZFA 3P8SA 1TOQA 1UGYA 5JM1A 3VZEA 2JZ4A 1VBOA 5J4TA 1WS4C 3APAA 1XEZA 3R50A 1UGXA 1UH0A 2GUEA 4R6QA 2GUCA 1ZGSA 3R51A 3LL1A 3AQGA 4MQ0A 4AK4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UGY C;  2BMZ A;  3LL2 A;  1C3K A;  4PIT A;  1C3N A;  1WS5 A;  1JOT A;  4PIK A;  5J4X A;  3LLZ A;  4DDN A;  2BN0 A;  4GX7 A;  2BMY A;  1TP8 A;  2NUO A;  3MIT A;  3MIU A;  1KU8 A;  2NU5 A;  4PIF A;  3VZG A;  1WS5 C;  5AV7 A;  4R6O A;  3WOC A;  4AKB A;  3VY6 A;  2GTY A;  3LL0 A;  1M26 A;  5J51 A;  4R6N A;  4WOG A;  1OUW A;  3O44 A;  1XXQ A;  3LLY A;  1J4U A;  2HYQ A;  3LKY A;  4R6R A;  4PIU A;  3VY7 A;  1X1V A;  1C3M A;  3R52 A;  1JAC A;  4AKD A;  2GUX A;  1UGW A;  3LM1 A;  1ZGR A;  5J50 A;  1UH1 A;  1J4S A;  1XXR A;  2GUD A;  3MIV A;  1VBP A;  5BN6 E;  1PXD A;  4AKC A;  1WS4 A;  1KUJ A;  3WOB A;  5EXG A;  4R6P A;  1UGW C;  1J4T A;  2HYR A;  3VZF A;  3P8S A;  1TOQ A;  1UGY A;  5JM1 A;  3VZE A;  2JZ4 A;  1VBO A;  5J4T A;  1WS4 C;  3APA A;  1XEZ A;  3R50 A;  1UGX A;  1UH0 A;  2GUE A;  4R6Q A;  2GUC A;  1ZGS A;  3R51 A;  3LL1 A;  3AQG A;  4MQ0 A;  4AK4 A; 
#chains in the Genus database with same CATH topology
 1UGY C;  2BMZ A;  3LL2 A;  1C3K A;  4PIT A;  1C3N A;  4ARX A;  2C9K A;  1WS5 A;  1JOT A;  4PIK A;  5J4X A;  4QX2 A;  3LLZ A;  4DDN A;  2BN0 A;  4GX7 A;  2BMY A;  1TP8 A;  2NUO A;  3MIT A;  3MIU A;  1KU8 A;  1VMO A;  2NU5 A;  4PIF A;  1JI6 A;  3VZG A;  1WS5 C;  5AV7 A;  4R6O A;  3WOC A;  4AKB A;  1DLC A;  2QP2 A;  3VY6 A;  2GTY A;  3LL0 A;  1M26 A;  5J51 A;  4R6N A;  4WOG A;  1OUW A;  3O44 A;  1XXQ A;  3LLY A;  1I5P A;  1J4U A;  2HYQ A;  3LKY A;  4QX0 A;  4R6R A;  4PIU A;  3VY7 A;  1X1V A;  1C3M A;  3R52 A;  1JAC A;  4AKD A;  2GUX A;  1UGW A;  4QX3 A;  3LM1 A;  4QX1 A;  1ZGR A;  4ARY A;  5J50 A;  1UH1 A;  4MOA A;  1J4S A;  1XXR A;  2GUD A;  3MIV A;  1VBP A;  5BN6 E;  1PXD A;  4AKC A;  1WS4 A;  1KUJ A;  3WOB A;  5EXG A;  4R6P A;  4D8M A;  1UGW C;  3TOW A;  1J4T A;  2HYR A;  3EB7 A;  4W8J A;  3VZF A;  3P8S A;  1TOQ A;  1UGY A;  5JM1 A;  3VZE A;  2JZ4 A;  1VBO A;  5J4T A;  1W99 A;  1WS4 C;  3APA A;  1XEZ A;  3R50 A;  1UGX A;  1UH0 A;  2GUE A;  1CIY A;  4R6Q A;  2GUC A;  1ZGS A;  3R51 A;  3LL1 A;  3AQG A;  4MQ0 A;  4AK4 A; 
#chains in the Genus database with same CATH homology
 1UGY C;  2BMZ A;  3LL2 A;  1C3K A;  4PIT A;  1C3N A;  1WS5 A;  1JOT A;  4PIK A;  5J4X A;  3LLZ A;  4DDN A;  2BN0 A;  4GX7 A;  2BMY A;  1TP8 A;  2NUO A;  3MIT A;  3MIU A;  1KU8 A;  2NU5 A;  4PIF A;  3VZG A;  1WS5 C;  5AV7 A;  4R6O A;  3WOC A;  4AKB A;  3VY6 A;  2GTY A;  3LL0 A;  1M26 A;  5J51 A;  4R6N A;  4WOG A;  1OUW A;  3O44 A;  1XXQ A;  3LLY A;  1J4U A;  2HYQ A;  3LKY A;  4R6R A;  4PIU A;  3VY7 A;  1X1V A;  1C3M A;  3R52 A;  1JAC A;  4AKD A;  2GUX A;  1UGW A;  3LM1 A;  1ZGR A;  5J50 A;  1UH1 A;  1J4S A;  1XXR A;  2GUD A;  3MIV A;  1VBP A;  5BN6 E;  1PXD A;  4AKC A;  1WS4 A;  1KUJ A;  3WOB A;  5EXG A;  4R6P A;  1UGW C;  1J4T A;  2HYR A;  3VZF A;  3P8S A;  1TOQ A;  1UGY A;  5JM1 A;  3VZE A;  2JZ4 A;  1VBO A;  5J4T A;  1WS4 C;  3APA A;  1XEZ A;  3R50 A;  1UGX A;  1UH0 A;  2GUE A;  4R6Q A;  2GUC A;  1ZGS A;  3R51 A;  3LL1 A;  3AQG A;  4MQ0 A;  4AK4 A; 
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