3LM1A

Crystal structure analysis of maclura pomifera agglutinin complex with p-nitrophenyl-galnac
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
133
structure length
133
Chain Sequence
GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Characterization of the secondary binding sites of Maclura pomifera agglutinin by glycan array and crystallographic analyses.
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
total genus 29
structure length 133
sequence length 133
chains with identical sequence C, E, G, I, K, M, O
ec nomenclature
pdb deposition date 2010-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3lm1A00
4R6QA 4GX7A 3R51A 2BMZA 1WS4C 3MIVA 1M26A 2GTYA 1XXQA 1PXDA 3VY6A 4R6PA 4AK4A 1OUWA 5J50A 2GUCA 4AKDA 3R50A 3VZFA 1J4UA 3APAA 1XEZA 3WOBA 1X1VA 1C3NA 2GUXA 1JOTA 3O44A 5BN6E 3R52A 4PIFA 3MIUA 3VZEA 5J51A 3AQGA 5JM1A 1UGYA 1UH0A 4DDNA 1KU8A 5J4XA 3LL1A 2GUEA 1ZGRA 5EXGA 1C3KA 4PIUA 1UGXA 1XXRA 1WS5A 1UH1A 2GUDA 1UGWC 3LLZA 1UGWA 4MQ0A 3LLYA 3LM1A 1UGYC 1KUJA 2HYQA 4WOGA 1TOQA 3MITA 1J4SA 4R6OA 3P8SA 2JZ4A 2BMYA 3VZGA 4PIKA 1JACA 1C3MA 3LL2A 2HYRA 5J4TA 1VBOA 1WS4A 2BN0A 1WS5C 1TP8A 4AKBA 4AKCA 2NUOA 2NU5A 1ZGSA 3LL0A 4R6RA 3LKYA 3VY7A 4R6NA 1J4TA 1VBPA 3WOCA 4PITA 5AV7A
chains in the Genus database with same CATH superfamily
4R6QA 4GX7A 3R51A 2BMZA 1I5PA 1WS4C 3MIVA 1VMOA 1M26A 2GTYA 1XXQA 4MOAA 1PXDA 3VY6A 4R6PA 4AK4A 1OUWA 5J50A 4QX3A 2C9KA 2GUCA 4AKDA 3R50A 3VZFA 1J4UA 3APAA 1XEZA 3WOBA 1X1VA 4D8MA 1C3NA 2GUXA 1JOTA 3O44A 5BN6E 3R52A 4PIFA 3MIUA 3VZEA 5J51A 3AQGA 5JM1A 1UGYA 1UH0A 4DDNA 1KU8A 5J4XA 3LL1A 2GUEA 1ZGRA 1W99A 1C3KA 5EXGA 4PIUA 4QX2A 1UGXA 1XXRA 1CIYA 1WS5A 1UH1A 2GUDA 1UGWC 3LLZA 1UGWA 4MQ0A 3LLYA 3LM1A 1UGYC 4W8JA 1KUJA 2HYQA 3TOWA 4WOGA 1TOQA 3MITA 1J4SA 4R6OA 3P8SA 2JZ4A 2BMYA 3VZGA 4PIKA 1JACA 4ARXA 1C3MA 3LL2A 1DLCA 2HYRA 3EB7A 1VBOA 5J4TA 4QX1A 1WS4A 2BN0A 2QP2A 1WS5C 1TP8A 4ARYA 4AKBA 4AKCA 2NUOA 2NU5A 1ZGSA 3LL0A 4R6RA 3LKYA 3VY7A 1JI6A 4R6NA 1J4TA 1VBPA 3WOCA 4QX0A 4PITA 5AV7A
chains in the Genus database with same CATH topology
4R6QA 4GX7A 3R51A 2BMZA 1WS4C 3MIVA 1M26A 2GTYA 1XXQA 1PXDA 3VY6A 4R6PA 4AK4A 1OUWA 5J50A 2GUCA 4AKDA 3R50A 3VZFA 1J4UA 3APAA 1XEZA 3WOBA 1X1VA 1C3NA 2GUXA 1JOTA 3O44A 5BN6E 3R52A 4PIFA 3MIUA 3VZEA 5J51A 3AQGA 5JM1A 1UGYA 1UH0A 4DDNA 1KU8A 5J4XA 3LL1A 2GUEA 1ZGRA 5EXGA 1C3KA 4PIUA 1UGXA 1XXRA 1WS5A 1UH1A 2GUDA 1UGWC 3LLZA 1UGWA 4MQ0A 3LLYA 3LM1A 1UGYC 1KUJA 2HYQA 4WOGA 1TOQA 3MITA 1J4SA 4R6OA 3P8SA 2JZ4A 2BMYA 3VZGA 4PIKA 1JACA 1C3MA 3LL2A 2HYRA 5J4TA 1VBOA 1WS4A 2BN0A 1WS5C 1TP8A 4AKBA 4AKCA 2NUOA 2NU5A 1ZGSA 3LL0A 4R6RA 3LKYA 3VY7A 4R6NA 1J4TA 1VBPA 3WOCA 4PITA 5AV7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4R6Q A;  4GX7 A;  3R51 A;  2BMZ A;  1WS4 C;  3MIV A;  1M26 A;  2GTY A;  1XXQ A;  1PXD A;  3VY6 A;  4R6P A;  4AK4 A;  1OUW A;  5J50 A;  2GUC A;  4AKD A;  3R50 A;  3VZF A;  1J4U A;  3APA A;  1XEZ A;  3WOB A;  1X1V A;  1C3N A;  2GUX A;  1JOT A;  3O44 A;  5BN6 E;  3R52 A;  4PIF A;  3MIU A;  3VZE A;  5J51 A;  3AQG A;  5JM1 A;  1UGY A;  1UH0 A;  4DDN A;  1KU8 A;  5J4X A;  3LL1 A;  2GUE A;  1ZGR A;  5EXG A;  1C3K A;  4PIU A;  1UGX A;  1XXR A;  1WS5 A;  1UH1 A;  2GUD A;  1UGW C;  3LLZ A;  1UGW A;  4MQ0 A;  3LLY A;  3LM1 A;  1UGY C;  1KUJ A;  2HYQ A;  4WOG A;  1TOQ A;  3MIT A;  1J4S A;  4R6O A;  3P8S A;  2JZ4 A;  2BMY A;  3VZG A;  4PIK A;  1JAC A;  1C3M A;  3LL2 A;  2HYR A;  5J4T A;  1VBO A;  1WS4 A;  2BN0 A;  1WS5 C;  1TP8 A;  4AKB A;  4AKC A;  2NUO A;  2NU5 A;  1ZGS A;  3LL0 A;  4R6R A;  3LKY A;  3VY7 A;  4R6N A;  1J4T A;  1VBP A;  3WOC A;  4PIT A;  5AV7 A; 
#chains in the Genus database with same CATH topology
 4R6Q A;  4GX7 A;  3R51 A;  2BMZ A;  1I5P A;  1WS4 C;  3MIV A;  1VMO A;  1M26 A;  2GTY A;  1XXQ A;  4MOA A;  1PXD A;  3VY6 A;  4R6P A;  4AK4 A;  1OUW A;  5J50 A;  4QX3 A;  2C9K A;  2GUC A;  4AKD A;  3R50 A;  3VZF A;  1J4U A;  3APA A;  1XEZ A;  3WOB A;  1X1V A;  4D8M A;  1C3N A;  2GUX A;  1JOT A;  3O44 A;  5BN6 E;  3R52 A;  4PIF A;  3MIU A;  3VZE A;  5J51 A;  3AQG A;  5JM1 A;  1UGY A;  1UH0 A;  4DDN A;  1KU8 A;  5J4X A;  3LL1 A;  2GUE A;  1ZGR A;  1W99 A;  1C3K A;  5EXG A;  4PIU A;  4QX2 A;  1UGX A;  1XXR A;  1CIY A;  1WS5 A;  1UH1 A;  2GUD A;  1UGW C;  3LLZ A;  1UGW A;  4MQ0 A;  3LLY A;  3LM1 A;  1UGY C;  4W8J A;  1KUJ A;  2HYQ A;  3TOW A;  4WOG A;  1TOQ A;  3MIT A;  1J4S A;  4R6O A;  3P8S A;  2JZ4 A;  2BMY A;  3VZG A;  4PIK A;  1JAC A;  4ARX A;  1C3M A;  3LL2 A;  1DLC A;  2HYR A;  3EB7 A;  1VBO A;  5J4T A;  4QX1 A;  1WS4 A;  2BN0 A;  2QP2 A;  1WS5 C;  1TP8 A;  4ARY A;  4AKB A;  4AKC A;  2NUO A;  2NU5 A;  1ZGS A;  3LL0 A;  4R6R A;  3LKY A;  3VY7 A;  1JI6 A;  4R6N A;  1J4T A;  1VBP A;  3WOC A;  4QX0 A;  4PIT A;  5AV7 A; 
#chains in the Genus database with same CATH homology
 4R6Q A;  4GX7 A;  3R51 A;  2BMZ A;  1WS4 C;  3MIV A;  1M26 A;  2GTY A;  1XXQ A;  1PXD A;  3VY6 A;  4R6P A;  4AK4 A;  1OUW A;  5J50 A;  2GUC A;  4AKD A;  3R50 A;  3VZF A;  1J4U A;  3APA A;  1XEZ A;  3WOB A;  1X1V A;  1C3N A;  2GUX A;  1JOT A;  3O44 A;  5BN6 E;  3R52 A;  4PIF A;  3MIU A;  3VZE A;  5J51 A;  3AQG A;  5JM1 A;  1UGY A;  1UH0 A;  4DDN A;  1KU8 A;  5J4X A;  3LL1 A;  2GUE A;  1ZGR A;  5EXG A;  1C3K A;  4PIU A;  1UGX A;  1XXR A;  1WS5 A;  1UH1 A;  2GUD A;  1UGW C;  3LLZ A;  1UGW A;  4MQ0 A;  3LLY A;  3LM1 A;  1UGY C;  1KUJ A;  2HYQ A;  4WOG A;  1TOQ A;  3MIT A;  1J4S A;  4R6O A;  3P8S A;  2JZ4 A;  2BMY A;  3VZG A;  4PIK A;  1JAC A;  1C3M A;  3LL2 A;  2HYR A;  5J4T A;  1VBO A;  1WS4 A;  2BN0 A;  1WS5 C;  1TP8 A;  4AKB A;  4AKC A;  2NUO A;  2NU5 A;  1ZGS A;  3LL0 A;  4R6R A;  3LKY A;  3VY7 A;  4R6N A;  1J4T A;  1VBP A;  3WOC A;  4PIT A;  5AV7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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