3LM1A

Crystal structure analysis of maclura pomifera agglutinin complex with p-nitrophenyl-galnac
Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
133
structure length
133
Chain Sequence
GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (2-5)S11 (124-132)S4 (37-44)TIV2 (33-36)S2 (11-19)TI1 (20-23)TIV1 (21-24)S7 (78-88)S3 (25-34)S10 (112-120)TII'1 (60-63)S8 (92-97)TI2 (88-91)S6 (65-75)TVIII1 (108-111)TIV5 (120-123)TIV3 (59-62)S9 (102-107)S5 (52-57)Updating...
connected with : NaN
molecule tags Sugar binding protein
publication title Characterization of the secondary binding sites of Maclura pomifera agglutinin by glycan array and crystallographic analyses.
pubmed doi rcsb
molecule keywords Agglutinin alpha chain
total genus 29
structure length 133
sequence length 133
chains with identical sequence C, E, G, I, K, M, O
ec nomenclature
pdb deposition date 2010-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3lm1A00
3R51A 1WS5A 4AKBA 2GUCA 5J4TA 4AKDA 3APAA 3WOBA 2GUXA 2HYRA 5AV7A 3LL1A 5EXGA 1UH1A 3VY6A 4R6PA 1XXQA 5JM1A 1UGYA 1J4SA 1XXRA 1ZGRA 1PXDA 1J4TA 1VBPA 1XEZA 3WOCA 4R6OA 2GUDA 4WOGA 1WS4C 1OUWA 1WS4A 5J50A 5BN6E 3VY7A 3R52A 1UH0A 4PITA 1J4UA 4PIKA 1KUJA 1ZGSA 1JOTA 5J4XA 1UGWA 4GX7A 1UGYC 2NU5A 3MIUA 4PIFA 1JACA 1KU8A 1C3MA 1M26A 4AK4A 2BMYA 2NUOA 2BMZA 1TOQA 3P8SA 3VZFA 3VZEA 3LL0A 3MIVA 3VZGA 1VBOA 1X1VA 3LLYA 3MITA 1UGXA 4MQ0A 4PIUA 1UGWC 4R6NA 4DDNA 3R50A 2HYQA 3O44A 2GUEA 1C3NA 5J51A 1C3KA 2GTYA 1TP8A 3LM1A 4AKCA 3LLZA 4R6QA 3LKYA 2JZ4A 3AQGA 4R6RA 2BN0A 3LL2A 1WS5C
chains in the Genus database with same CATH superfamily
3R51A 1WS5A 4ARXA 4AKBA 2GUCA 5J4TA 4AKDA 3APAA 3WOBA 4QX3A 2GUXA 2HYRA 4W8JA 5AV7A 3LL1A 5EXGA 1DLCA 1UH1A 3VY6A 4R6PA 1XXQA 3TOWA 5JM1A 1W99A 4QX0A 4ARYA 1UGYA 1J4SA 1XXRA 1ZGRA 1PXDA 1J4TA 1VBPA 1XEZA 3WOCA 4R6OA 2GUDA 4WOGA 1WS4C 1OUWA 1WS4A 5J50A 1VMOA 5BN6E 3VY7A 3R52A 1UH0A 1JI6A 4PITA 1J4UA 4PIKA 1KUJA 1ZGSA 1JOTA 5J4XA 2C9KA 1UGWA 4GX7A 1UGYC 2NU5A 3MIUA 4PIFA 1JACA 1KU8A 1I5PA 1C3MA 1M26A 4AK4A 2BMYA 2NUOA 2BMZA 1TOQA 3P8SA 3VZFA 3VZEA 3LL0A 3MIVA 3VZGA 1VBOA 1X1VA 2QP2A 3LLYA 3MITA 1UGXA 4MQ0A 4PIUA 1UGWC 4R6NA 4DDNA 3R50A 4QX2A 2HYQA 3O44A 4D8MA 2GUEA 1C3NA 5J51A 1C3KA 4QX1A 4MOAA 2GTYA 1TP8A 3LM1A 4AKCA 3LLZA 4R6QA 3EB7A 3LKYA 1CIYA 2JZ4A 3AQGA 4R6RA 2BN0A 3LL2A 1WS5C
chains in the Genus database with same CATH topology
3R51A 1WS5A 4AKBA 2GUCA 5J4TA 4AKDA 3APAA 3WOBA 2GUXA 2HYRA 5AV7A 3LL1A 5EXGA 1UH1A 3VY6A 4R6PA 1XXQA 5JM1A 1UGYA 1J4SA 1XXRA 1ZGRA 1PXDA 1J4TA 1VBPA 1XEZA 3WOCA 4R6OA 2GUDA 4WOGA 1WS4C 1OUWA 1WS4A 5J50A 5BN6E 3VY7A 3R52A 1UH0A 4PITA 1J4UA 4PIKA 1KUJA 1ZGSA 1JOTA 5J4XA 1UGWA 4GX7A 1UGYC 2NU5A 3MIUA 4PIFA 1JACA 1KU8A 1C3MA 1M26A 4AK4A 2BMYA 2NUOA 2BMZA 1TOQA 3P8SA 3VZFA 3VZEA 3LL0A 3MIVA 3VZGA 1VBOA 1X1VA 3LLYA 3MITA 1UGXA 4MQ0A 4PIUA 1UGWC 4R6NA 4DDNA 3R50A 2HYQA 3O44A 2GUEA 1C3NA 5J51A 1C3KA 2GTYA 1TP8A 3LM1A 4AKCA 3LLZA 4R6QA 3LKYA 2JZ4A 3AQGA 4R6RA 2BN0A 3LL2A 1WS5C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3R51 A;  1WS5 A;  4AKB A;  2GUC A;  5J4T A;  4AKD A;  3APA A;  3WOB A;  2GUX A;  2HYR A;  5AV7 A;  3LL1 A;  5EXG A;  1UH1 A;  3VY6 A;  4R6P A;  1XXQ A;  5JM1 A;  1UGY A;  1J4S A;  1XXR A;  1ZGR A;  1PXD A;  1J4T A;  1VBP A;  1XEZ A;  3WOC A;  4R6O A;  2GUD A;  4WOG A;  1WS4 C;  1OUW A;  1WS4 A;  5J50 A;  5BN6 E;  3VY7 A;  3R52 A;  1UH0 A;  4PIT A;  1J4U A;  4PIK A;  1KUJ A;  1ZGS A;  1JOT A;  5J4X A;  1UGW A;  4GX7 A;  1UGY C;  2NU5 A;  3MIU A;  4PIF A;  1JAC A;  1KU8 A;  1C3M A;  1M26 A;  4AK4 A;  2BMY A;  2NUO A;  2BMZ A;  1TOQ A;  3P8S A;  3VZF A;  3VZE A;  3LL0 A;  3MIV A;  3VZG A;  1VBO A;  1X1V A;  3LLY A;  3MIT A;  1UGX A;  4MQ0 A;  4PIU A;  1UGW C;  4R6N A;  4DDN A;  3R50 A;  2HYQ A;  3O44 A;  2GUE A;  1C3N A;  5J51 A;  1C3K A;  2GTY A;  1TP8 A;  3LM1 A;  4AKC A;  3LLZ A;  4R6Q A;  3LKY A;  2JZ4 A;  3AQG A;  4R6R A;  2BN0 A;  3LL2 A;  1WS5 C; 
#chains in the Genus database with same CATH topology
 3R51 A;  1WS5 A;  4ARX A;  4AKB A;  2GUC A;  5J4T A;  4AKD A;  3APA A;  3WOB A;  4QX3 A;  2GUX A;  2HYR A;  4W8J A;  5AV7 A;  3LL1 A;  5EXG A;  1DLC A;  1UH1 A;  3VY6 A;  4R6P A;  1XXQ A;  3TOW A;  5JM1 A;  1W99 A;  4QX0 A;  4ARY A;  1UGY A;  1J4S A;  1XXR A;  1ZGR A;  1PXD A;  1J4T A;  1VBP A;  1XEZ A;  3WOC A;  4R6O A;  2GUD A;  4WOG A;  1WS4 C;  1OUW A;  1WS4 A;  5J50 A;  1VMO A;  5BN6 E;  3VY7 A;  3R52 A;  1UH0 A;  1JI6 A;  4PIT A;  1J4U A;  4PIK A;  1KUJ A;  1ZGS A;  1JOT A;  5J4X A;  2C9K A;  1UGW A;  4GX7 A;  1UGY C;  2NU5 A;  3MIU A;  4PIF A;  1JAC A;  1KU8 A;  1I5P A;  1C3M A;  1M26 A;  4AK4 A;  2BMY A;  2NUO A;  2BMZ A;  1TOQ A;  3P8S A;  3VZF A;  3VZE A;  3LL0 A;  3MIV A;  3VZG A;  1VBO A;  1X1V A;  2QP2 A;  3LLY A;  3MIT A;  1UGX A;  4MQ0 A;  4PIU A;  1UGW C;  4R6N A;  4DDN A;  3R50 A;  4QX2 A;  2HYQ A;  3O44 A;  4D8M A;  2GUE A;  1C3N A;  5J51 A;  1C3K A;  4QX1 A;  4MOA A;  2GTY A;  1TP8 A;  3LM1 A;  4AKC A;  3LLZ A;  4R6Q A;  3EB7 A;  3LKY A;  1CIY A;  2JZ4 A;  3AQG A;  4R6R A;  2BN0 A;  3LL2 A;  1WS5 C; 
#chains in the Genus database with same CATH homology
 3R51 A;  1WS5 A;  4AKB A;  2GUC A;  5J4T A;  4AKD A;  3APA A;  3WOB A;  2GUX A;  2HYR A;  5AV7 A;  3LL1 A;  5EXG A;  1UH1 A;  3VY6 A;  4R6P A;  1XXQ A;  5JM1 A;  1UGY A;  1J4S A;  1XXR A;  1ZGR A;  1PXD A;  1J4T A;  1VBP A;  1XEZ A;  3WOC A;  4R6O A;  2GUD A;  4WOG A;  1WS4 C;  1OUW A;  1WS4 A;  5J50 A;  5BN6 E;  3VY7 A;  3R52 A;  1UH0 A;  4PIT A;  1J4U A;  4PIK A;  1KUJ A;  1ZGS A;  1JOT A;  5J4X A;  1UGW A;  4GX7 A;  1UGY C;  2NU5 A;  3MIU A;  4PIF A;  1JAC A;  1KU8 A;  1C3M A;  1M26 A;  4AK4 A;  2BMY A;  2NUO A;  2BMZ A;  1TOQ A;  3P8S A;  3VZF A;  3VZE A;  3LL0 A;  3MIV A;  3VZG A;  1VBO A;  1X1V A;  3LLY A;  3MIT A;  1UGX A;  4MQ0 A;  4PIU A;  1UGW C;  4R6N A;  4DDN A;  3R50 A;  2HYQ A;  3O44 A;  2GUE A;  1C3N A;  5J51 A;  1C3K A;  2GTY A;  1TP8 A;  3LM1 A;  4AKC A;  3LLZ A;  4R6Q A;  3LKY A;  2JZ4 A;  3AQG A;  4R6R A;  2BN0 A;  3LL2 A;  1WS5 C; 
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