3LM1A

Crystal structure analysis of maclura pomifera agglutinin complex with p-nitrophenyl-galnac
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
133
structure length
133
Chain Sequence
GVTFDDGAYTGIREINFEYNSETAIGGLRVTYDLNGMPFVAEDHKSFITGFKPVKISLEFPSEYIVEVSGYVGKVEGYTVIRSLTFKTNKQTYGPYGVTNGTPFSLPIENGLIVGFKGSIGYWLDYFSIYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Characterization of the secondary binding sites of Maclura pomifera agglutinin by glycan array and crystallographic analyses.
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords Agglutinin alpha chain
total genus 29
structure length 133
sequence length 133
chains with identical sequence C, E, G, I, K, M, O
ec nomenclature
pdb deposition date 2010-01-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3lm1A00
1UH1A 4R6OA 4AKCA 1M26A 4PIKA 2BMZA 1VBOA 5BN6E 2HYQA 1C3NA 4DDNA 1UGWC 1WS4C 4WOGA 1UH0A 4AK4A 3VZFA 1ZGRA 3LL2A 5J4XA 3VZEA 2NU5A 1UGXA 3MIUA 1UGYC 5J4TA 4AKDA 4R6QA 5J51A 1WS5C 1J4TA 3R51A 3VZGA 1ZGSA 2GUCA 1TP8A 1JOTA 1UGWA 2NUOA 3LL1A 3VY6A 3LKYA 1OUWA 3WOCA 1XXRA 1UGYA 4AKBA 3R50A 1XXQA 4PIFA 1J4UA 3LL0A 1TOQA 3MITA 1PXDA 1WS4A 4R6RA 1KUJA 3O44A 2GUDA 3APAA 5EXGA 4PITA 1VBPA 2GUEA 2GTYA 5AV7A 1C3MA 1X1VA 2BN0A 3LLYA 4PIUA 3LM1A 4MQ0A 1XEZA 1WS5A 3WOBA 4R6PA 3VY7A 4R6NA 2HYRA 1J4SA 1C3KA 1JACA 1KU8A 3P8SA 5JM1A 5J50A 3LLZA 4GX7A 3MIVA 3AQGA 3R52A 2BMYA 2GUXA 2JZ4A
chains in the Genus database with same CATH superfamily
1UH1A 4R6OA 4AKCA 1M26A 1VMOA 4PIKA 2BMZA 1VBOA 5BN6E 2HYQA 1C3NA 4MOAA 4DDNA 1UGWC 1WS4C 4WOGA 1UH0A 4AK4A 3VZFA 1ZGRA 3LL2A 5J4XA 3VZEA 2NU5A 1UGXA 3MIUA 1UGYC 5J4TA 4QX1A 4AKDA 4R6QA 5J51A 1CIYA 1WS5C 1J4TA 4ARYA 3R51A 3VZGA 1ZGSA 2GUCA 1TP8A 1JOTA 1UGWA 2NUOA 4D8MA 3LL1A 3VY6A 3LKYA 1OUWA 3WOCA 1XXRA 1UGYA 4AKBA 2QP2A 3R50A 1XXQA 4PIFA 1J4UA 3LL0A 1TOQA 4W8JA 4QX3A 3MITA 1PXDA 1WS4A 4R6RA 1KUJA 3O44A 2GUDA 3APAA 5EXGA 4PITA 1VBPA 2GUEA 2GTYA 5AV7A 1C3MA 2C9KA 1X1VA 2BN0A 3LLYA 4PIUA 3LM1A 4MQ0A 4QX2A 1JI6A 3EB7A 1XEZA 1WS5A 3WOBA 4R6PA 3VY7A 4ARXA 4R6NA 2HYRA 4QX0A 3TOWA 1J4SA 1C3KA 1JACA 1KU8A 3P8SA 5JM1A 5J50A 1I5PA 3LLZA 4GX7A 3MIVA 3AQGA 1DLCA 3R52A 2BMYA 1W99A 2GUXA 2JZ4A
chains in the Genus database with same CATH topology
1UH1A 4R6OA 4AKCA 1M26A 4PIKA 2BMZA 1VBOA 5BN6E 2HYQA 1C3NA 4DDNA 1UGWC 1WS4C 4WOGA 1UH0A 4AK4A 3VZFA 1ZGRA 3LL2A 5J4XA 3VZEA 2NU5A 1UGXA 3MIUA 1UGYC 5J4TA 4AKDA 4R6QA 5J51A 1WS5C 1J4TA 3R51A 3VZGA 1ZGSA 2GUCA 1TP8A 1JOTA 1UGWA 2NUOA 3LL1A 3VY6A 3LKYA 1OUWA 3WOCA 1XXRA 1UGYA 4AKBA 3R50A 1XXQA 4PIFA 1J4UA 3LL0A 1TOQA 3MITA 1PXDA 1WS4A 4R6RA 1KUJA 3O44A 2GUDA 3APAA 5EXGA 4PITA 1VBPA 2GUEA 2GTYA 5AV7A 1C3MA 1X1VA 2BN0A 3LLYA 4PIUA 3LM1A 4MQ0A 1XEZA 1WS5A 3WOBA 4R6PA 3VY7A 4R6NA 2HYRA 1J4SA 1C3KA 1JACA 1KU8A 3P8SA 5JM1A 5J50A 3LLZA 4GX7A 3MIVA 3AQGA 3R52A 2BMYA 2GUXA 2JZ4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UH1 A;  4R6O A;  4AKC A;  1M26 A;  4PIK A;  2BMZ A;  1VBO A;  5BN6 E;  2HYQ A;  1C3N A;  4DDN A;  1UGW C;  1WS4 C;  4WOG A;  1UH0 A;  4AK4 A;  3VZF A;  1ZGR A;  3LL2 A;  5J4X A;  3VZE A;  2NU5 A;  1UGX A;  3MIU A;  1UGY C;  5J4T A;  4AKD A;  4R6Q A;  5J51 A;  1WS5 C;  1J4T A;  3R51 A;  3VZG A;  1ZGS A;  2GUC A;  1TP8 A;  1JOT A;  1UGW A;  2NUO A;  3LL1 A;  3VY6 A;  3LKY A;  1OUW A;  3WOC A;  1XXR A;  1UGY A;  4AKB A;  3R50 A;  1XXQ A;  4PIF A;  1J4U A;  3LL0 A;  1TOQ A;  3MIT A;  1PXD A;  1WS4 A;  4R6R A;  1KUJ A;  3O44 A;  2GUD A;  3APA A;  5EXG A;  4PIT A;  1VBP A;  2GUE A;  2GTY A;  5AV7 A;  1C3M A;  1X1V A;  2BN0 A;  3LLY A;  4PIU A;  3LM1 A;  4MQ0 A;  1XEZ A;  1WS5 A;  3WOB A;  4R6P A;  3VY7 A;  4R6N A;  2HYR A;  1J4S A;  1C3K A;  1JAC A;  1KU8 A;  3P8S A;  5JM1 A;  5J50 A;  3LLZ A;  4GX7 A;  3MIV A;  3AQG A;  3R52 A;  2BMY A;  2GUX A;  2JZ4 A; 
#chains in the Genus database with same CATH topology
 1UH1 A;  4R6O A;  4AKC A;  1M26 A;  1VMO A;  4PIK A;  2BMZ A;  1VBO A;  5BN6 E;  2HYQ A;  1C3N A;  4MOA A;  4DDN A;  1UGW C;  1WS4 C;  4WOG A;  1UH0 A;  4AK4 A;  3VZF A;  1ZGR A;  3LL2 A;  5J4X A;  3VZE A;  2NU5 A;  1UGX A;  3MIU A;  1UGY C;  5J4T A;  4QX1 A;  4AKD A;  4R6Q A;  5J51 A;  1CIY A;  1WS5 C;  1J4T A;  4ARY A;  3R51 A;  3VZG A;  1ZGS A;  2GUC A;  1TP8 A;  1JOT A;  1UGW A;  2NUO A;  4D8M A;  3LL1 A;  3VY6 A;  3LKY A;  1OUW A;  3WOC A;  1XXR A;  1UGY A;  4AKB A;  2QP2 A;  3R50 A;  1XXQ A;  4PIF A;  1J4U A;  3LL0 A;  1TOQ A;  4W8J A;  4QX3 A;  3MIT A;  1PXD A;  1WS4 A;  4R6R A;  1KUJ A;  3O44 A;  2GUD A;  3APA A;  5EXG A;  4PIT A;  1VBP A;  2GUE A;  2GTY A;  5AV7 A;  1C3M A;  2C9K A;  1X1V A;  2BN0 A;  3LLY A;  4PIU A;  3LM1 A;  4MQ0 A;  4QX2 A;  1JI6 A;  3EB7 A;  1XEZ A;  1WS5 A;  3WOB A;  4R6P A;  3VY7 A;  4ARX A;  4R6N A;  2HYR A;  4QX0 A;  3TOW A;  1J4S A;  1C3K A;  1JAC A;  1KU8 A;  3P8S A;  5JM1 A;  5J50 A;  1I5P A;  3LLZ A;  4GX7 A;  3MIV A;  3AQG A;  1DLC A;  3R52 A;  2BMY A;  1W99 A;  2GUX A;  2JZ4 A; 
#chains in the Genus database with same CATH homology
 1UH1 A;  4R6O A;  4AKC A;  1M26 A;  4PIK A;  2BMZ A;  1VBO A;  5BN6 E;  2HYQ A;  1C3N A;  4DDN A;  1UGW C;  1WS4 C;  4WOG A;  1UH0 A;  4AK4 A;  3VZF A;  1ZGR A;  3LL2 A;  5J4X A;  3VZE A;  2NU5 A;  1UGX A;  3MIU A;  1UGY C;  5J4T A;  4AKD A;  4R6Q A;  5J51 A;  1WS5 C;  1J4T A;  3R51 A;  3VZG A;  1ZGS A;  2GUC A;  1TP8 A;  1JOT A;  1UGW A;  2NUO A;  3LL1 A;  3VY6 A;  3LKY A;  1OUW A;  3WOC A;  1XXR A;  1UGY A;  4AKB A;  3R50 A;  1XXQ A;  4PIF A;  1J4U A;  3LL0 A;  1TOQ A;  3MIT A;  1PXD A;  1WS4 A;  4R6R A;  1KUJ A;  3O44 A;  2GUD A;  3APA A;  5EXG A;  4PIT A;  1VBP A;  2GUE A;  2GTY A;  5AV7 A;  1C3M A;  1X1V A;  2BN0 A;  3LLY A;  4PIU A;  3LM1 A;  4MQ0 A;  1XEZ A;  1WS5 A;  3WOB A;  4R6P A;  3VY7 A;  4R6N A;  2HYR A;  1J4S A;  1C3K A;  1JAC A;  1KU8 A;  3P8S A;  5JM1 A;  5J50 A;  3LLZ A;  4GX7 A;  3MIV A;  3AQG A;  3R52 A;  2BMY A;  2GUX A;  2JZ4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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