3LNB | Genus

Total Genus 73

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	73
sequence length	267
structure length	252
Chain Sequence	MMTNLQKEFFKRLKIPAKEITFNDLDEILLNMGMILPFENLDIMAGTIKNISKNNLVEKLLIQKRGGLCYELNSLLYYFLMDCGFQVYKVAGTVYDLYDNKWKPDDGHVIIILHHNKKDYVIDAGFASHLPLHPVPFSGEVISSQTGEYRIRKRTTQKGTHILEMRKDEWKIGYAFTLDPIDEQKVNNIQKVIVEHKESPFNKGAITCKLTNYGHISLTNKNYTETFKGTKNKRPIESKDYARILRESFGIT

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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Time for openFile(/file/5cff7b45bb69de7ddae02414/pdb.gz): 1040 ms

reading 252 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

252 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 24 ms

Adding embedded #jmolscript: select ({0:251});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal Structure Analysis of Arylamine N-acetyltransferase C from Bacillus anthracis rcsb
molecule keywords	N-acetyltransferase family protein
molecule tags	Transferase
source organism	Bacillus anthracis
total genus	73
structure length	252
sequence length	267
ec nomenclature	ec 2.3.1.5: Arylamine N-acetyltransferase.
pdb deposition date	2010-02-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00797	Acetyltransf_2	N-acetyltransferase

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.2140.20	Alpha Beta	2-Layer Sandwich	Arylamine N-acetyltransferase fold	Arylamine N-acetyltransferase fold	3lnbA00

2IJAA 4DMOA 3LNBA 2PQTA 2PFRA
chains in the Genus database with same CATH superfamily

3LTWA 3LNBA 2VFBA 4BGFA 2IJAA 4NV7A 1W6FA 3D9WA 4DMOA 4NV8A 2VFCA 4GUZA 4C5PA 1W5RA 1GX3A 1W4TA 2PFRA 2BSZA 4B55A 2PQTA
chains in the Genus database with same CATH topology

2IJAA 4DMOA 3LNBA 2PQTA 2PFRA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 2IJA A;  4DMO A;  3LNB A;  2PQT A;  2PFR A; 
#chains in the Genus database with same CATH topology
 3LTW A;  3LNB A;  2VFB A;  4BGF A;  2IJA A;  4NV7 A;  1W6F A;  3D9W A;  4DMO A;  4NV8 A;  2VFC A;  4GUZ A;  4C5P A;  1W5R A;  1GX3 A;  1W4T A;  2PFR A;  2BSZ A;  4B55 A;  2PQT A; 
#chains in the Genus database with same CATH homology
 2IJA A;  4DMO A;  3LNB A;  2PQT A;  2PFR A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3LNBA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations