3LZK | Genus

Total Genus 87

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	87
sequence length	340
structure length	340
Chain Sequence	FQGMKLATLKDSTRDGKLVVVSKDLTRCSEVGHIARTLQAALDDWAHAGPRLERVAEGIETGAQPTMRFHEHDAASPLPRAFQWADGSAYVNHVELVRKARNAEMPASFWTDPLIYQGGSDSFLGPRDPILMADDAWGIDMEGEAAVIVDDVPMGATLDEAKAAIRLVMLVNDVSLRGLIPGELAKGFGFYQSKPSSAFSPVAVTPEELGEAWDGGKLHLPLHVDLNGEPFGRANAGIDMTFDFPQLIVHAARTRPLSAGTIIGSGTVSNKLEGGPGRPVSEGGAGYSCIAELRMIETIEGGAPKTQFLKFGDVVRIEMKDRTGHSIFGAIEQKVGKYER

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 340 atoms

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340 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Sinorhizobium meliloti
publication title	The crystal structure of a probably aromatic amino acid degradation protein from Sinorhizobium meliloti 1021 rcsb
molecule keywords	Fumarylacetoacetate hydrolase family protein
total genus	87
structure length	340
sequence length	340
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2010-03-01

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01557	FAA_hydrolase	Fumarylacetoacetate (FAA) hydrolase family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase; domain 2	Fumarylacetoacetase-like, C-terminal domain	3lzkA00

2EB6A 3S52A 2DFUA 3RR6A 1QQJA 1NKQA 2Q19X 3R6OA 4DBHA 1QCOA 5D2IA 5D2FA 1SV6A 5D2GA 1QCNA 2EB4A 4PFZA 1HYOA 4DBFA 1GTTA 5D2KA 2Q1DX 4MAQA 1NR9A 1SAWA 5D2HA 1I7OA 1WZOA 2Q1AX 2EB5A 2Q1CX 2WQTA 4QKUA 5D2JA 3V77A 3BQBA 3QDFA 3LZKA 2Q18X 2HZYA
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 2EB6 A;  3S52 A;  2DFU A;  3RR6 A;  1QQJ A;  1NKQ A;  2Q19 X;  3R6O A;  4DBH A;  1QCO A;  5D2I A;  5D2F A;  1SV6 A;  5D2G A;  1QCN A;  2EB4 A;  4PFZ A;  1HYO A;  4DBF A;  1GTT A;  5D2K A;  2Q1D X;  4MAQ A;  1NR9 A;  1SAW A;  5D2H A;  1I7O A;  1WZO A;  2Q1A X;  2EB5 A;  2Q1C X;  2WQT A;  4QKU A;  5D2J A;  3V77 A;  3BQB A;  3QDF A;  3LZK A;  2Q18 X;  2HZY A; 
#chains in the Genus database with same CATH topology
 2EB6 A;  3S52 A;  2DFU A;  3RR6 A;  1QQJ A;  1NKQ A;  2Q19 X;  3R6O A;  4DBH A;  1QCO A;  5D2I A;  5D2F A;  1SV6 A;  5D2G A;  1QCN A;  2EB4 A;  4PFZ A;  1HYO A;  4DBF A;  1GTT A;  5D2K A;  2Q1D X;  4MAQ A;  1NR9 A;  1SAW A;  5D2H A;  1I7O A;  1WZO A;  2Q1A X;  2EB5 A;  2Q1C X;  2WQT A;  4QKU A;  5D2J A;  3V77 A;  3BQB A;  3QDF A;  3LZK A;  2Q18 X;  2HZY A; 
#chains in the Genus database with same CATH homology
 2EB6 A;  3S52 A;  2DFU A;  3RR6 A;  1QQJ A;  1NKQ A;  2Q19 X;  3R6O A;  4DBH A;  1QCO A;  5D2I A;  5D2F A;  1SV6 A;  5D2G A;  1QCN A;  2EB4 A;  4PFZ A;  1HYO A;  4DBF A;  1GTT A;  5D2K A;  2Q1D X;  4MAQ A;  1NR9 A;  1SAW A;  5D2H A;  1I7O A;  1WZO A;  2Q1A X;  2EB5 A;  2Q1C X;  2WQT A;  4QKU A;  5D2J A;  3V77 A;  3BQB A;  3QDF A;  3LZK A;  2Q18 X;  2HZY A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3LZKA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations