3MITA

Structure of banana lectin-alpha-d-mannose complex
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
138
structure length
138
Chain Sequence
AIKVGAWGGNGGSAFDMGPAYRIISVKIFSGDVVDAVDVTFTYYGKTETRHFGGSGGTPHEIVLQEGEYLVGMKGEFGNYHGVVVVGKLGFSTNKKSYGPFGNTGGTPFSLPIAAGKISGFFGRGGDFIDAIGVYLEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Influence of glycosidic linkage on the nature of carbohydrate binding in beta-prism I fold lectins: an X-ray and molecular dynamics investigation on banana lectin-carbohydrate complexes
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords Lectin
total genus 26
structure length 138
sequence length 138
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-04-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3mitA00
3VZFA 2GUXA 4R6RA 3R52A 3R50A 2GUDA 4PIKA 1UGYC 3MIVA 1WS5A 3O44A 5J51A 4MQ0A 1UH0A 3WOBA 1UGXA 1TOQA 2HYRA 2GUCA 1UGWA 1WS4A 1X1VA 1ZGSA 1XXRA 3LL2A 4R6NA 4R6PA 4PITA 3P8SA 2NU5A 2BN0A 1VBOA 5J50A 1PXDA 1OUWA 3LM1A 3WOCA 5EXGA 3VZEA 4AKCA 4GX7A 3VY7A 1UH1A 3MITA 3LL1A 2NUOA 1UGYA 4AK4A 2JZ4A 3AQGA 1J4UA 1J4SA 2HYQA 1TP8A 4PIUA 1WS5C 1ZGRA 1C3KA 1KUJA 4R6QA 3VY6A 5AV7A 2GUEA 1VBPA 1JOTA 4WOGA 1XXQA 5J4XA 1UGWC 3LLYA 1WS4C 5JM1A 5J4TA 2BMYA 3APAA 1JACA 3LKYA 1KU8A 1C3NA 5BN6E 2GTYA 3MIUA 4AKBA 4R6OA 3R51A 1M26A 1XEZA 2BMZA 4AKDA 4PIFA 3LL0A 3LLZA 3VZGA 1C3MA 4DDNA 1J4TA
chains in the Genus database with same CATH superfamily
3VZFA 2GUXA 4R6RA 4QX1A 3R52A 3R50A 2GUDA 4PIKA 1UGYC 3MIVA 1WS5A 3O44A 5J51A 1I5PA 4MQ0A 1UH0A 3WOBA 1UGXA 1TOQA 2HYRA 4ARXA 2GUCA 1UGWA 4W8JA 1WS4A 1X1VA 1CIYA 1ZGSA 1XXRA 3LL2A 4R6NA 4QX3A 4R6PA 3EB7A 2C9KA 1JI6A 4PITA 3P8SA 2NU5A 2BN0A 4ARYA 1VBOA 5J50A 1PXDA 4MOAA 1OUWA 1VMOA 3LM1A 3WOCA 5EXGA 3VZEA 4AKCA 4GX7A 3VY7A 1UH1A 3MITA 1DLCA 3LL1A 2NUOA 1UGYA 4AK4A 2JZ4A 3AQGA 1J4UA 1J4SA 2HYQA 1TP8A 4PIUA 1WS5C 1ZGRA 1C3KA 1KUJA 4R6QA 3VY6A 5AV7A 2GUEA 1VBPA 1JOTA 4WOGA 1XXQA 5J4XA 1UGWC 3LLYA 1WS4C 5JM1A 5J4TA 2BMYA 4QX2A 4D8MA 3APAA 1JACA 3LKYA 1KU8A 1C3NA 5BN6E 2GTYA 3MIUA 4AKBA 4R6OA 3R51A 1M26A 1XEZA 2BMZA 4AKDA 4PIFA 3LL0A 1W99A 4QX0A 2QP2A 3LLZA 3VZGA 1C3MA 4DDNA 3TOWA 1J4TA
chains in the Genus database with same CATH topology
3VZFA 2GUXA 4R6RA 3R52A 3R50A 2GUDA 4PIKA 1UGYC 3MIVA 1WS5A 3O44A 5J51A 4MQ0A 1UH0A 3WOBA 1UGXA 1TOQA 2HYRA 2GUCA 1UGWA 1WS4A 1X1VA 1ZGSA 1XXRA 3LL2A 4R6NA 4R6PA 4PITA 3P8SA 2NU5A 2BN0A 1VBOA 5J50A 1PXDA 1OUWA 3LM1A 3WOCA 5EXGA 3VZEA 4AKCA 4GX7A 3VY7A 1UH1A 3MITA 3LL1A 2NUOA 1UGYA 4AK4A 2JZ4A 3AQGA 1J4UA 1J4SA 2HYQA 1TP8A 4PIUA 1WS5C 1ZGRA 1C3KA 1KUJA 4R6QA 3VY6A 5AV7A 2GUEA 1VBPA 1JOTA 4WOGA 1XXQA 5J4XA 1UGWC 3LLYA 1WS4C 5JM1A 5J4TA 2BMYA 3APAA 1JACA 3LKYA 1KU8A 1C3NA 5BN6E 2GTYA 3MIUA 4AKBA 4R6OA 3R51A 1M26A 1XEZA 2BMZA 4AKDA 4PIFA 3LL0A 3LLZA 3VZGA 1C3MA 4DDNA 1J4TA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VZF A;  2GUX A;  4R6R A;  3R52 A;  3R50 A;  2GUD A;  4PIK A;  1UGY C;  3MIV A;  1WS5 A;  3O44 A;  5J51 A;  4MQ0 A;  1UH0 A;  3WOB A;  1UGX A;  1TOQ A;  2HYR A;  2GUC A;  1UGW A;  1WS4 A;  1X1V A;  1ZGS A;  1XXR A;  3LL2 A;  4R6N A;  4R6P A;  4PIT A;  3P8S A;  2NU5 A;  2BN0 A;  1VBO A;  5J50 A;  1PXD A;  1OUW A;  3LM1 A;  3WOC A;  5EXG A;  3VZE A;  4AKC A;  4GX7 A;  3VY7 A;  1UH1 A;  3MIT A;  3LL1 A;  2NUO A;  1UGY A;  4AK4 A;  2JZ4 A;  3AQG A;  1J4U A;  1J4S A;  2HYQ A;  1TP8 A;  4PIU A;  1WS5 C;  1ZGR A;  1C3K A;  1KUJ A;  4R6Q A;  3VY6 A;  5AV7 A;  2GUE A;  1VBP A;  1JOT A;  4WOG A;  1XXQ A;  5J4X A;  1UGW C;  3LLY A;  1WS4 C;  5JM1 A;  5J4T A;  2BMY A;  3APA A;  1JAC A;  3LKY A;  1KU8 A;  1C3N A;  5BN6 E;  2GTY A;  3MIU A;  4AKB A;  4R6O A;  3R51 A;  1M26 A;  1XEZ A;  2BMZ A;  4AKD A;  4PIF A;  3LL0 A;  3LLZ A;  3VZG A;  1C3M A;  4DDN A;  1J4T A; 
#chains in the Genus database with same CATH topology
 3VZF A;  2GUX A;  4R6R A;  4QX1 A;  3R52 A;  3R50 A;  2GUD A;  4PIK A;  1UGY C;  3MIV A;  1WS5 A;  3O44 A;  5J51 A;  1I5P A;  4MQ0 A;  1UH0 A;  3WOB A;  1UGX A;  1TOQ A;  2HYR A;  4ARX A;  2GUC A;  1UGW A;  4W8J A;  1WS4 A;  1X1V A;  1CIY A;  1ZGS A;  1XXR A;  3LL2 A;  4R6N A;  4QX3 A;  4R6P A;  3EB7 A;  2C9K A;  1JI6 A;  4PIT A;  3P8S A;  2NU5 A;  2BN0 A;  4ARY A;  1VBO A;  5J50 A;  1PXD A;  4MOA A;  1OUW A;  1VMO A;  3LM1 A;  3WOC A;  5EXG A;  3VZE A;  4AKC A;  4GX7 A;  3VY7 A;  1UH1 A;  3MIT A;  1DLC A;  3LL1 A;  2NUO A;  1UGY A;  4AK4 A;  2JZ4 A;  3AQG A;  1J4U A;  1J4S A;  2HYQ A;  1TP8 A;  4PIU A;  1WS5 C;  1ZGR A;  1C3K A;  1KUJ A;  4R6Q A;  3VY6 A;  5AV7 A;  2GUE A;  1VBP A;  1JOT A;  4WOG A;  1XXQ A;  5J4X A;  1UGW C;  3LLY A;  1WS4 C;  5JM1 A;  5J4T A;  2BMY A;  4QX2 A;  4D8M A;  3APA A;  1JAC A;  3LKY A;  1KU8 A;  1C3N A;  5BN6 E;  2GTY A;  3MIU A;  4AKB A;  4R6O A;  3R51 A;  1M26 A;  1XEZ A;  2BMZ A;  4AKD A;  4PIF A;  3LL0 A;  1W99 A;  4QX0 A;  2QP2 A;  3LLZ A;  3VZG A;  1C3M A;  4DDN A;  3TOW A;  1J4T A; 
#chains in the Genus database with same CATH homology
 3VZF A;  2GUX A;  4R6R A;  3R52 A;  3R50 A;  2GUD A;  4PIK A;  1UGY C;  3MIV A;  1WS5 A;  3O44 A;  5J51 A;  4MQ0 A;  1UH0 A;  3WOB A;  1UGX A;  1TOQ A;  2HYR A;  2GUC A;  1UGW A;  1WS4 A;  1X1V A;  1ZGS A;  1XXR A;  3LL2 A;  4R6N A;  4R6P A;  4PIT A;  3P8S A;  2NU5 A;  2BN0 A;  1VBO A;  5J50 A;  1PXD A;  1OUW A;  3LM1 A;  3WOC A;  5EXG A;  3VZE A;  4AKC A;  4GX7 A;  3VY7 A;  1UH1 A;  3MIT A;  3LL1 A;  2NUO A;  1UGY A;  4AK4 A;  2JZ4 A;  3AQG A;  1J4U A;  1J4S A;  2HYQ A;  1TP8 A;  4PIU A;  1WS5 C;  1ZGR A;  1C3K A;  1KUJ A;  4R6Q A;  3VY6 A;  5AV7 A;  2GUE A;  1VBP A;  1JOT A;  4WOG A;  1XXQ A;  5J4X A;  1UGW C;  3LLY A;  1WS4 C;  5JM1 A;  5J4T A;  2BMY A;  3APA A;  1JAC A;  3LKY A;  1KU8 A;  1C3N A;  5BN6 E;  2GTY A;  3MIU A;  4AKB A;  4R6O A;  3R51 A;  1M26 A;  1XEZ A;  2BMZ A;  4AKD A;  4PIF A;  3LL0 A;  3LLZ A;  3VZG A;  1C3M A;  4DDN A;  1J4T A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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