3MITA

Structure of banana lectin-alpha-d-mannose complex
Total Genus 26

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
138
structure length
138
Chain Sequence
AIKVGAWGGNGGSAFDMGPAYRIISVKIFSGDVVDAVDVTFTYYGKTETRHFGGSGGTPHEIVLQEGEYLVGMKGEFGNYHGVVVVGKLGFSTNKKSYGPFGNTGGTPFSLPIAAGKISGFFGRGGDFIDAIGVYLEP

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (16-22)S1 (5-11)S12 (132-140)TIV5 (128-131)S11 (120-128)TVIII3 (116-119)S4 (37-46)TVIII1 (23-26)S6 (61-66)S3 (25-33)S7 (73-83)S8 (86-96)TIV1 (33-36)S5 (49-56)TIV3 (45-48)TII1 (68-71)S10 (110-115)TIV4 (82-85)TI1 (96-99)S9 (100-104)Updating...
connected with : NaN
molecule tags Sugar binding protein
publication title Influence of glycosidic linkage on the nature of carbohydrate binding in beta-prism I fold lectins: an X-ray and molecular dynamics investigation on banana lectin-carbohydrate complexes
pubmed doi rcsb
molecule keywords Lectin
total genus 26
structure length 138
sequence length 138
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-04-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3mitA00
1J4SA 3LL0A 3VY7A 1UGYC 1WS4A 1WS5A 1UGWC 4R6PA 3LM1A 1TP8A 1ZGSA 5J4XA 3R52A 4DDNA 1WS4C 5EXGA 1WS5C 2GTYA 2BMYA 5BN6E 1VBOA 4R6NA 3MIVA 3VY6A 2BN0A 3VZFA 3VZGA 1C3MA 1XXRA 1UGXA 1UH1A 2NU5A 3LL2A 3LL1A 2GUEA 3O44A 2JZ4A 3WOBA 4AK4A 1VBPA 4PIFA 3VZEA 4PIKA 4R6OA 1C3NA 5JM1A 1ZGRA 4GX7A 3LLYA 1JOTA 3AQGA 2HYRA 4PITA 1PXDA 2BMZA 1UH0A 2GUDA 4AKCA 1XXQA 1TOQA 4R6RA 4MQ0A 1OUWA 4AKDA 3APAA 3LKYA 3R51A 1C3KA 1M26A 1X1VA 1KU8A 2HYQA 1J4TA 2NUOA 2GUCA 4AKBA 4PIUA 5AV7A 4WOGA 4R6QA 2GUXA 1J4UA 1XEZA 1JACA 3LLZA 5J51A 3WOCA 1KUJA 1UGYA 5J4TA 1UGWA 5J50A 3P8SA 3MITA 3MIUA 3R50A
chains in the Genus database with same CATH superfamily
1J4SA 3LL0A 3VY7A 1UGYC 1WS4A 1WS5A 1UGWC 4R6PA 1I5PA 3LM1A 1TP8A 1ZGSA 5J4XA 3R52A 4DDNA 4W8JA 1WS4C 5EXGA 1W99A 1WS5C 2GTYA 2BMYA 2QP2A 5BN6E 1VBOA 4R6NA 3MIVA 3VY6A 2BN0A 3VZFA 3VZGA 1C3MA 1XXRA 1UGXA 1UH1A 2NU5A 3LL2A 3LL1A 2GUEA 3O44A 2JZ4A 3WOBA 4AK4A 1CIYA 3EB7A 1VBPA 4PIFA 3VZEA 4PIKA 4R6OA 1C3NA 5JM1A 1ZGRA 4GX7A 2C9KA 3LLYA 1JOTA 3AQGA 2HYRA 4PITA 4ARYA 1PXDA 2BMZA 1UH0A 2GUDA 4AKCA 1XXQA 1TOQA 4R6RA 4QX0A 4MQ0A 1OUWA 4AKDA 1VMOA 4QX2A 3APAA 3LKYA 3R51A 1C3KA 4D8MA 1M26A 1X1VA 1JI6A 4QX1A 1KU8A 2HYQA 1J4TA 2NUOA 2GUCA 4MOAA 4AKBA 4PIUA 5AV7A 4WOGA 4ARXA 4R6QA 2GUXA 1J4UA 1XEZA 4QX3A 3TOWA 1JACA 3LLZA 5J51A 3WOCA 1DLCA 1KUJA 1UGYA 5J4TA 1UGWA 5J50A 3P8SA 3MITA 3MIUA 3R50A
chains in the Genus database with same CATH topology
1J4SA 3LL0A 3VY7A 1UGYC 1WS4A 1WS5A 1UGWC 4R6PA 3LM1A 1TP8A 1ZGSA 5J4XA 3R52A 4DDNA 1WS4C 5EXGA 1WS5C 2GTYA 2BMYA 5BN6E 1VBOA 4R6NA 3MIVA 3VY6A 2BN0A 3VZFA 3VZGA 1C3MA 1XXRA 1UGXA 1UH1A 2NU5A 3LL2A 3LL1A 2GUEA 3O44A 2JZ4A 3WOBA 4AK4A 1VBPA 4PIFA 3VZEA 4PIKA 4R6OA 1C3NA 5JM1A 1ZGRA 4GX7A 3LLYA 1JOTA 3AQGA 2HYRA 4PITA 1PXDA 2BMZA 1UH0A 2GUDA 4AKCA 1XXQA 1TOQA 4R6RA 4MQ0A 1OUWA 4AKDA 3APAA 3LKYA 3R51A 1C3KA 1M26A 1X1VA 1KU8A 2HYQA 1J4TA 2NUOA 2GUCA 4AKBA 4PIUA 5AV7A 4WOGA 4R6QA 2GUXA 1J4UA 1XEZA 1JACA 3LLZA 5J51A 3WOCA 1KUJA 1UGYA 5J4TA 1UGWA 5J50A 3P8SA 3MITA 3MIUA 3R50A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J4S A;  3LL0 A;  3VY7 A;  1UGY C;  1WS4 A;  1WS5 A;  1UGW C;  4R6P A;  3LM1 A;  1TP8 A;  1ZGS A;  5J4X A;  3R52 A;  4DDN A;  1WS4 C;  5EXG A;  1WS5 C;  2GTY A;  2BMY A;  5BN6 E;  1VBO A;  4R6N A;  3MIV A;  3VY6 A;  2BN0 A;  3VZF A;  3VZG A;  1C3M A;  1XXR A;  1UGX A;  1UH1 A;  2NU5 A;  3LL2 A;  3LL1 A;  2GUE A;  3O44 A;  2JZ4 A;  3WOB A;  4AK4 A;  1VBP A;  4PIF A;  3VZE A;  4PIK A;  4R6O A;  1C3N A;  5JM1 A;  1ZGR A;  4GX7 A;  3LLY A;  1JOT A;  3AQG A;  2HYR A;  4PIT A;  1PXD A;  2BMZ A;  1UH0 A;  2GUD A;  4AKC A;  1XXQ A;  1TOQ A;  4R6R A;  4MQ0 A;  1OUW A;  4AKD A;  3APA A;  3LKY A;  3R51 A;  1C3K A;  1M26 A;  1X1V A;  1KU8 A;  2HYQ A;  1J4T A;  2NUO A;  2GUC A;  4AKB A;  4PIU A;  5AV7 A;  4WOG A;  4R6Q A;  2GUX A;  1J4U A;  1XEZ A;  1JAC A;  3LLZ A;  5J51 A;  3WOC A;  1KUJ A;  1UGY A;  5J4T A;  1UGW A;  5J50 A;  3P8S A;  3MIT A;  3MIU A;  3R50 A; 
#chains in the Genus database with same CATH topology
 1J4S A;  3LL0 A;  3VY7 A;  1UGY C;  1WS4 A;  1WS5 A;  1UGW C;  4R6P A;  1I5P A;  3LM1 A;  1TP8 A;  1ZGS A;  5J4X A;  3R52 A;  4DDN A;  4W8J A;  1WS4 C;  5EXG A;  1W99 A;  1WS5 C;  2GTY A;  2BMY A;  2QP2 A;  5BN6 E;  1VBO A;  4R6N A;  3MIV A;  3VY6 A;  2BN0 A;  3VZF A;  3VZG A;  1C3M A;  1XXR A;  1UGX A;  1UH1 A;  2NU5 A;  3LL2 A;  3LL1 A;  2GUE A;  3O44 A;  2JZ4 A;  3WOB A;  4AK4 A;  1CIY A;  3EB7 A;  1VBP A;  4PIF A;  3VZE A;  4PIK A;  4R6O A;  1C3N A;  5JM1 A;  1ZGR A;  4GX7 A;  2C9K A;  3LLY A;  1JOT A;  3AQG A;  2HYR A;  4PIT A;  4ARY A;  1PXD A;  2BMZ A;  1UH0 A;  2GUD A;  4AKC A;  1XXQ A;  1TOQ A;  4R6R A;  4QX0 A;  4MQ0 A;  1OUW A;  4AKD A;  1VMO A;  4QX2 A;  3APA A;  3LKY A;  3R51 A;  1C3K A;  4D8M A;  1M26 A;  1X1V A;  1JI6 A;  4QX1 A;  1KU8 A;  2HYQ A;  1J4T A;  2NUO A;  2GUC A;  4MOA A;  4AKB A;  4PIU A;  5AV7 A;  4WOG A;  4ARX A;  4R6Q A;  2GUX A;  1J4U A;  1XEZ A;  4QX3 A;  3TOW A;  1JAC A;  3LLZ A;  5J51 A;  3WOC A;  1DLC A;  1KUJ A;  1UGY A;  5J4T A;  1UGW A;  5J50 A;  3P8S A;  3MIT A;  3MIU A;  3R50 A; 
#chains in the Genus database with same CATH homology
 1J4S A;  3LL0 A;  3VY7 A;  1UGY C;  1WS4 A;  1WS5 A;  1UGW C;  4R6P A;  3LM1 A;  1TP8 A;  1ZGS A;  5J4X A;  3R52 A;  4DDN A;  1WS4 C;  5EXG A;  1WS5 C;  2GTY A;  2BMY A;  5BN6 E;  1VBO A;  4R6N A;  3MIV A;  3VY6 A;  2BN0 A;  3VZF A;  3VZG A;  1C3M A;  1XXR A;  1UGX A;  1UH1 A;  2NU5 A;  3LL2 A;  3LL1 A;  2GUE A;  3O44 A;  2JZ4 A;  3WOB A;  4AK4 A;  1VBP A;  4PIF A;  3VZE A;  4PIK A;  4R6O A;  1C3N A;  5JM1 A;  1ZGR A;  4GX7 A;  3LLY A;  1JOT A;  3AQG A;  2HYR A;  4PIT A;  1PXD A;  2BMZ A;  1UH0 A;  2GUD A;  4AKC A;  1XXQ A;  1TOQ A;  4R6R A;  4MQ0 A;  1OUW A;  4AKD A;  3APA A;  3LKY A;  3R51 A;  1C3K A;  1M26 A;  1X1V A;  1KU8 A;  2HYQ A;  1J4T A;  2NUO A;  2GUC A;  4AKB A;  4PIU A;  5AV7 A;  4WOG A;  4R6Q A;  2GUX A;  1J4U A;  1XEZ A;  1JAC A;  3LLZ A;  5J51 A;  3WOC A;  1KUJ A;  1UGY A;  5J4T A;  1UGW A;  5J50 A;  3P8S A;  3MIT A;  3MIU A;  3R50 A; 
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similar chains in the Genus database (?% sequence similarity)
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