3MIVA

Structure of banana lectin - glc-alpha(1,2)-glc complex
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
138
structure length
138
Chain Sequence
AIKVGAWGGNGGSAFDMGPAYRIISVKIFSGDVVDAVDVTFTYYGKTETRHFGGSGGTPHEIVLQEGEYLVGMKGEFGNYHGVVVVGKLGFSTNKKSYGPFGNTGGTPFSLPIAAGKISGFFGRGGDFIDAIGVYLEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Influence of glycosidic linkage on the nature of carbohydrate binding in beta-prism I fold lectins: an X-ray and molecular dynamics investigation on banana lectin-carbohydrate complexes
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords Lectin
total genus 23
structure length 138
sequence length 138
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-04-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3mivA00
3LLYA 3LLZA 3APAA 4R6RA 1UGWC 3VZGA 2GUEA 1TP8A 1M26A 3O44A 2GUDA 3MIVA 2GUXA 1ZGRA 3VY6A 1C3KA 4R6NA 1X1VA 5JM1A 1J4TA 3LM1A 4MQ0A 1TOQA 1WS4A 4PITA 1XXQA 3R51A 2BMZA 1XXRA 1VBPA 5EXGA 1C3NA 5AV7A 4PIKA 2JZ4A 1UGXA 4AKBA 5J4XA 3MIUA 4AK4A 1KUJA 3AQGA 3LL1A 3LL2A 3R50A 2HYQA 1WS4C 4R6PA 1WS5A 5J51A 4R6OA 1VBOA 1UH0A 1PXDA 4DDNA 3R52A 1WS5C 1C3MA 1J4UA 3P8SA 5J4TA 1JACA 2NU5A 1OUWA 1ZGSA 2GUCA 4R6QA 1UGYA 2GTYA 2HYRA 4GX7A 3VY7A 3MITA 3LKYA 4PIUA 4WOGA 3WOBA 2NUOA 1UGYC 4AKCA 5BN6E 5J50A 3WOCA 3LL0A 1UH1A 1XEZA 4PIFA 2BMYA 1JOTA 1J4SA 1KU8A 3VZFA 2BN0A 1UGWA 3VZEA 4AKDA
chains in the Genus database with same CATH superfamily
3LLYA 3LLZA 3APAA 4R6RA 1UGWC 3VZGA 2GUEA 1TP8A 1M26A 3O44A 2GUDA 3MIVA 2GUXA 1ZGRA 1CIYA 3VY6A 4W8JA 1C3KA 4R6NA 1X1VA 5JM1A 1J4TA 3LM1A 4MQ0A 4ARYA 1TOQA 1WS4A 4QX3A 4PITA 4QX1A 1XXQA 3R51A 2BMZA 1XXRA 1VBPA 5EXGA 1W99A 1C3NA 5AV7A 4PIKA 2JZ4A 1UGXA 1VMOA 4AKBA 5J4XA 3MIUA 4AK4A 1JI6A 1KUJA 3AQGA 3LL1A 3LL2A 3R50A 2HYQA 1WS4C 4R6PA 3TOWA 1WS5A 5J51A 4QX0A 4R6OA 4D8MA 1DLCA 1VBOA 1UH0A 1PXDA 4DDNA 3R52A 1WS5C 1C3MA 1J4UA 2QP2A 3P8SA 5J4TA 1JACA 2NU5A 4ARXA 1OUWA 1ZGSA 2GUCA 2C9KA 4R6QA 1UGYA 1I5PA 2GTYA 2HYRA 4GX7A 3VY7A 3MITA 3LKYA 3EB7A 4PIUA 4WOGA 3WOBA 2NUOA 1UGYC 4AKCA 5BN6E 5J50A 3WOCA 3LL0A 1UH1A 1XEZA 4PIFA 2BMYA 1JOTA 4MOAA 1J4SA 1KU8A 3VZFA 2BN0A 1UGWA 3VZEA 4AKDA 4QX2A
chains in the Genus database with same CATH topology
3LLYA 3LLZA 3APAA 4R6RA 1UGWC 3VZGA 2GUEA 1TP8A 1M26A 3O44A 2GUDA 3MIVA 2GUXA 1ZGRA 3VY6A 1C3KA 4R6NA 1X1VA 5JM1A 1J4TA 3LM1A 4MQ0A 1TOQA 1WS4A 4PITA 1XXQA 3R51A 2BMZA 1XXRA 1VBPA 5EXGA 1C3NA 5AV7A 4PIKA 2JZ4A 1UGXA 4AKBA 5J4XA 3MIUA 4AK4A 1KUJA 3AQGA 3LL1A 3LL2A 3R50A 2HYQA 1WS4C 4R6PA 1WS5A 5J51A 4R6OA 1VBOA 1UH0A 1PXDA 4DDNA 3R52A 1WS5C 1C3MA 1J4UA 3P8SA 5J4TA 1JACA 2NU5A 1OUWA 1ZGSA 2GUCA 4R6QA 1UGYA 2GTYA 2HYRA 4GX7A 3VY7A 3MITA 3LKYA 4PIUA 4WOGA 3WOBA 2NUOA 1UGYC 4AKCA 5BN6E 5J50A 3WOCA 3LL0A 1UH1A 1XEZA 4PIFA 2BMYA 1JOTA 1J4SA 1KU8A 3VZFA 2BN0A 1UGWA 3VZEA 4AKDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3LLY A;  3LLZ A;  3APA A;  4R6R A;  1UGW C;  3VZG A;  2GUE A;  1TP8 A;  1M26 A;  3O44 A;  2GUD A;  3MIV A;  2GUX A;  1ZGR A;  3VY6 A;  1C3K A;  4R6N A;  1X1V A;  5JM1 A;  1J4T A;  3LM1 A;  4MQ0 A;  1TOQ A;  1WS4 A;  4PIT A;  1XXQ A;  3R51 A;  2BMZ A;  1XXR A;  1VBP A;  5EXG A;  1C3N A;  5AV7 A;  4PIK A;  2JZ4 A;  1UGX A;  4AKB A;  5J4X A;  3MIU A;  4AK4 A;  1KUJ A;  3AQG A;  3LL1 A;  3LL2 A;  3R50 A;  2HYQ A;  1WS4 C;  4R6P A;  1WS5 A;  5J51 A;  4R6O A;  1VBO A;  1UH0 A;  1PXD A;  4DDN A;  3R52 A;  1WS5 C;  1C3M A;  1J4U A;  3P8S A;  5J4T A;  1JAC A;  2NU5 A;  1OUW A;  1ZGS A;  2GUC A;  4R6Q A;  1UGY A;  2GTY A;  2HYR A;  4GX7 A;  3VY7 A;  3MIT A;  3LKY A;  4PIU A;  4WOG A;  3WOB A;  2NUO A;  1UGY C;  4AKC A;  5BN6 E;  5J50 A;  3WOC A;  3LL0 A;  1UH1 A;  1XEZ A;  4PIF A;  2BMY A;  1JOT A;  1J4S A;  1KU8 A;  3VZF A;  2BN0 A;  1UGW A;  3VZE A;  4AKD A; 
#chains in the Genus database with same CATH topology
 3LLY A;  3LLZ A;  3APA A;  4R6R A;  1UGW C;  3VZG A;  2GUE A;  1TP8 A;  1M26 A;  3O44 A;  2GUD A;  3MIV A;  2GUX A;  1ZGR A;  1CIY A;  3VY6 A;  4W8J A;  1C3K A;  4R6N A;  1X1V A;  5JM1 A;  1J4T A;  3LM1 A;  4MQ0 A;  4ARY A;  1TOQ A;  1WS4 A;  4QX3 A;  4PIT A;  4QX1 A;  1XXQ A;  3R51 A;  2BMZ A;  1XXR A;  1VBP A;  5EXG A;  1W99 A;  1C3N A;  5AV7 A;  4PIK A;  2JZ4 A;  1UGX A;  1VMO A;  4AKB A;  5J4X A;  3MIU A;  4AK4 A;  1JI6 A;  1KUJ A;  3AQG A;  3LL1 A;  3LL2 A;  3R50 A;  2HYQ A;  1WS4 C;  4R6P A;  3TOW A;  1WS5 A;  5J51 A;  4QX0 A;  4R6O A;  4D8M A;  1DLC A;  1VBO A;  1UH0 A;  1PXD A;  4DDN A;  3R52 A;  1WS5 C;  1C3M A;  1J4U A;  2QP2 A;  3P8S A;  5J4T A;  1JAC A;  2NU5 A;  4ARX A;  1OUW A;  1ZGS A;  2GUC A;  2C9K A;  4R6Q A;  1UGY A;  1I5P A;  2GTY A;  2HYR A;  4GX7 A;  3VY7 A;  3MIT A;  3LKY A;  3EB7 A;  4PIU A;  4WOG A;  3WOB A;  2NUO A;  1UGY C;  4AKC A;  5BN6 E;  5J50 A;  3WOC A;  3LL0 A;  1UH1 A;  1XEZ A;  4PIF A;  2BMY A;  1JOT A;  4MOA A;  1J4S A;  1KU8 A;  3VZF A;  2BN0 A;  1UGW A;  3VZE A;  4AKD A;  4QX2 A; 
#chains in the Genus database with same CATH homology
 3LLY A;  3LLZ A;  3APA A;  4R6R A;  1UGW C;  3VZG A;  2GUE A;  1TP8 A;  1M26 A;  3O44 A;  2GUD A;  3MIV A;  2GUX A;  1ZGR A;  3VY6 A;  1C3K A;  4R6N A;  1X1V A;  5JM1 A;  1J4T A;  3LM1 A;  4MQ0 A;  1TOQ A;  1WS4 A;  4PIT A;  1XXQ A;  3R51 A;  2BMZ A;  1XXR A;  1VBP A;  5EXG A;  1C3N A;  5AV7 A;  4PIK A;  2JZ4 A;  1UGX A;  4AKB A;  5J4X A;  3MIU A;  4AK4 A;  1KUJ A;  3AQG A;  3LL1 A;  3LL2 A;  3R50 A;  2HYQ A;  1WS4 C;  4R6P A;  1WS5 A;  5J51 A;  4R6O A;  1VBO A;  1UH0 A;  1PXD A;  4DDN A;  3R52 A;  1WS5 C;  1C3M A;  1J4U A;  3P8S A;  5J4T A;  1JAC A;  2NU5 A;  1OUW A;  1ZGS A;  2GUC A;  4R6Q A;  1UGY A;  2GTY A;  2HYR A;  4GX7 A;  3VY7 A;  3MIT A;  3LKY A;  4PIU A;  4WOG A;  3WOB A;  2NUO A;  1UGY C;  4AKC A;  5BN6 E;  5J50 A;  3WOC A;  3LL0 A;  1UH1 A;  1XEZ A;  4PIF A;  2BMY A;  1JOT A;  1J4S A;  1KU8 A;  3VZF A;  2BN0 A;  1UGW A;  3VZE A;  4AKD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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