3MIVA

Structure of banana lectin - glc-alpha(1,2)-glc complex
Total Genus 23
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
138
structure length
138
Chain Sequence
AIKVGAWGGNGGSAFDMGPAYRIISVKIFSGDVVDAVDVTFTYYGKTETRHFGGSGGTPHEIVLQEGEYLVGMKGEFGNYHGVVVVGKLGFSTNKKSYGPFGNTGGTPFSLPIAAGKISGFFGRGGDFIDAIGVYLEP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Influence of glycosidic linkage on the nature of carbohydrate binding in beta-prism I fold lectins: an X-ray and molecular dynamics investigation on banana lectin-carbohydrate complexes
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords Lectin
total genus 23
structure length 138
sequence length 138
chains with identical sequence B
ec nomenclature
pdb deposition date 2010-04-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3mivA00
2BMZA 4AKDA 2BN0A 5JM1A 1UH1A 3MITA 3WOBA 3LL0A 1J4TA 2HYRA 2NU5A 4R6PA 1XXRA 4R6RA 2JZ4A 3P8SA 1XEZA 1WS5C 3LLYA 1JOTA 1WS5A 1XXQA 3VZEA 3R50A 3R52A 3WOCA 2HYQA 4AKCA 3R51A 4R6QA 1PXDA 2GUEA 4MQ0A 1C3MA 2GTYA 1ZGRA 4AKBA 5AV7A 3VZGA 4AK4A 4PIUA 5J4TA 1VBPA 4PIKA 3MIVA 1TP8A 3LL1A 3VY6A 1OUWA 3APAA 4R6OA 1M26A 1KUJA 1WS4C 1UGXA 5BN6E 3VZFA 4R6NA 1WS4A 3VY7A 5J51A 4DDNA 1UGWC 3AQGA 1ZGSA 1C3KA 1X1VA 1KU8A 1TOQA 3LL2A 5J4XA 1J4SA 2GUXA 2BMYA 2GUDA 3LLZA 2GUCA 4GX7A 4PITA 1J4UA 4PIFA 3O44A 2NUOA 1JACA 3LKYA 3LM1A 1C3NA 5EXGA 3MIUA 4WOGA 5J50A 1VBOA 1UGYC 1UGWA 1UH0A 1UGYA
chains in the Genus database with same CATH superfamily
2BMZA 4AKDA 2BN0A 5JM1A 1UH1A 3MITA 3WOBA 3LL0A 1J4TA 2HYRA 2NU5A 4R6PA 1XXRA 4R6RA 2JZ4A 1I5PA 4MOAA 3P8SA 1XEZA 4ARYA 1WS5C 3TOWA 3LLYA 1JOTA 1WS5A 1XXQA 4QX3A 3VZEA 3R50A 3R52A 3WOCA 4QX2A 2HYQA 4AKCA 4ARXA 3R51A 4R6QA 1PXDA 2GUEA 4MQ0A 1JI6A 1C3MA 2GTYA 1DLCA 1ZGRA 4AKBA 5AV7A 3VZGA 4AK4A 4PIUA 2QP2A 5J4TA 4QX0A 1VBPA 2C9KA 4W8JA 4PIKA 3MIVA 1TP8A 3LL1A 3VY6A 1OUWA 3APAA 4R6OA 1M26A 1CIYA 3EB7A 1KUJA 1WS4C 1UGXA 5BN6E 3VZFA 4R6NA 1WS4A 3VY7A 5J51A 4DDNA 1UGWC 3AQGA 1ZGSA 1C3KA 1X1VA 1KU8A 1TOQA 3LL2A 5J4XA 1J4SA 2GUXA 2BMYA 2GUDA 3LLZA 2GUCA 4GX7A 1VMOA 4PITA 1J4UA 4PIFA 3O44A 4QX1A 2NUOA 1JACA 1W99A 3LKYA 3LM1A 1C3NA 5EXGA 3MIUA 4WOGA 4D8MA 5J50A 1VBOA 1UGYC 1UGWA 1UH0A 1UGYA
chains in the Genus database with same CATH topology
2BMZA 4AKDA 2BN0A 5JM1A 1UH1A 3MITA 3WOBA 3LL0A 1J4TA 2HYRA 2NU5A 4R6PA 1XXRA 4R6RA 2JZ4A 3P8SA 1XEZA 1WS5C 3LLYA 1JOTA 1WS5A 1XXQA 3VZEA 3R50A 3R52A 3WOCA 2HYQA 4AKCA 3R51A 4R6QA 1PXDA 2GUEA 4MQ0A 1C3MA 2GTYA 1ZGRA 4AKBA 5AV7A 3VZGA 4AK4A 4PIUA 5J4TA 1VBPA 4PIKA 3MIVA 1TP8A 3LL1A 3VY6A 1OUWA 3APAA 4R6OA 1M26A 1KUJA 1WS4C 1UGXA 5BN6E 3VZFA 4R6NA 1WS4A 3VY7A 5J51A 4DDNA 1UGWC 3AQGA 1ZGSA 1C3KA 1X1VA 1KU8A 1TOQA 3LL2A 5J4XA 1J4SA 2GUXA 2BMYA 2GUDA 3LLZA 2GUCA 4GX7A 4PITA 1J4UA 4PIFA 3O44A 2NUOA 1JACA 3LKYA 3LM1A 1C3NA 5EXGA 3MIUA 4WOGA 5J50A 1VBOA 1UGYC 1UGWA 1UH0A 1UGYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2BMZ A;  4AKD A;  2BN0 A;  5JM1 A;  1UH1 A;  3MIT A;  3WOB A;  3LL0 A;  1J4T A;  2HYR A;  2NU5 A;  4R6P A;  1XXR A;  4R6R A;  2JZ4 A;  3P8S A;  1XEZ A;  1WS5 C;  3LLY A;  1JOT A;  1WS5 A;  1XXQ A;  3VZE A;  3R50 A;  3R52 A;  3WOC A;  2HYQ A;  4AKC A;  3R51 A;  4R6Q A;  1PXD A;  2GUE A;  4MQ0 A;  1C3M A;  2GTY A;  1ZGR A;  4AKB A;  5AV7 A;  3VZG A;  4AK4 A;  4PIU A;  5J4T A;  1VBP A;  4PIK A;  3MIV A;  1TP8 A;  3LL1 A;  3VY6 A;  1OUW A;  3APA A;  4R6O A;  1M26 A;  1KUJ A;  1WS4 C;  1UGX A;  5BN6 E;  3VZF A;  4R6N A;  1WS4 A;  3VY7 A;  5J51 A;  4DDN A;  1UGW C;  3AQG A;  1ZGS A;  1C3K A;  1X1V A;  1KU8 A;  1TOQ A;  3LL2 A;  5J4X A;  1J4S A;  2GUX A;  2BMY A;  2GUD A;  3LLZ A;  2GUC A;  4GX7 A;  4PIT A;  1J4U A;  4PIF A;  3O44 A;  2NUO A;  1JAC A;  3LKY A;  3LM1 A;  1C3N A;  5EXG A;  3MIU A;  4WOG A;  5J50 A;  1VBO A;  1UGY C;  1UGW A;  1UH0 A;  1UGY A; 
#chains in the Genus database with same CATH topology
 2BMZ A;  4AKD A;  2BN0 A;  5JM1 A;  1UH1 A;  3MIT A;  3WOB A;  3LL0 A;  1J4T A;  2HYR A;  2NU5 A;  4R6P A;  1XXR A;  4R6R A;  2JZ4 A;  1I5P A;  4MOA A;  3P8S A;  1XEZ A;  4ARY A;  1WS5 C;  3TOW A;  3LLY A;  1JOT A;  1WS5 A;  1XXQ A;  4QX3 A;  3VZE A;  3R50 A;  3R52 A;  3WOC A;  4QX2 A;  2HYQ A;  4AKC A;  4ARX A;  3R51 A;  4R6Q A;  1PXD A;  2GUE A;  4MQ0 A;  1JI6 A;  1C3M A;  2GTY A;  1DLC A;  1ZGR A;  4AKB A;  5AV7 A;  3VZG A;  4AK4 A;  4PIU A;  2QP2 A;  5J4T A;  4QX0 A;  1VBP A;  2C9K A;  4W8J A;  4PIK A;  3MIV A;  1TP8 A;  3LL1 A;  3VY6 A;  1OUW A;  3APA A;  4R6O A;  1M26 A;  1CIY A;  3EB7 A;  1KUJ A;  1WS4 C;  1UGX A;  5BN6 E;  3VZF A;  4R6N A;  1WS4 A;  3VY7 A;  5J51 A;  4DDN A;  1UGW C;  3AQG A;  1ZGS A;  1C3K A;  1X1V A;  1KU8 A;  1TOQ A;  3LL2 A;  5J4X A;  1J4S A;  2GUX A;  2BMY A;  2GUD A;  3LLZ A;  2GUC A;  4GX7 A;  1VMO A;  4PIT A;  1J4U A;  4PIF A;  3O44 A;  4QX1 A;  2NUO A;  1JAC A;  1W99 A;  3LKY A;  3LM1 A;  1C3N A;  5EXG A;  3MIU A;  4WOG A;  4D8M A;  5J50 A;  1VBO A;  1UGY C;  1UGW A;  1UH0 A;  1UGY A; 
#chains in the Genus database with same CATH homology
 2BMZ A;  4AKD A;  2BN0 A;  5JM1 A;  1UH1 A;  3MIT A;  3WOB A;  3LL0 A;  1J4T A;  2HYR A;  2NU5 A;  4R6P A;  1XXR A;  4R6R A;  2JZ4 A;  3P8S A;  1XEZ A;  1WS5 C;  3LLY A;  1JOT A;  1WS5 A;  1XXQ A;  3VZE A;  3R50 A;  3R52 A;  3WOC A;  2HYQ A;  4AKC A;  3R51 A;  4R6Q A;  1PXD A;  2GUE A;  4MQ0 A;  1C3M A;  2GTY A;  1ZGR A;  4AKB A;  5AV7 A;  3VZG A;  4AK4 A;  4PIU A;  5J4T A;  1VBP A;  4PIK A;  3MIV A;  1TP8 A;  3LL1 A;  3VY6 A;  1OUW A;  3APA A;  4R6O A;  1M26 A;  1KUJ A;  1WS4 C;  1UGX A;  5BN6 E;  3VZF A;  4R6N A;  1WS4 A;  3VY7 A;  5J51 A;  4DDN A;  1UGW C;  3AQG A;  1ZGS A;  1C3K A;  1X1V A;  1KU8 A;  1TOQ A;  3LL2 A;  5J4X A;  1J4S A;  2GUX A;  2BMY A;  2GUD A;  3LLZ A;  2GUC A;  4GX7 A;  4PIT A;  1J4U A;  4PIF A;  3O44 A;  2NUO A;  1JAC A;  3LKY A;  3LM1 A;  1C3N A;  5EXG A;  3MIU A;  4WOG A;  5J50 A;  1VBO A;  1UGY C;  1UGW A;  1UH0 A;  1UGY A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...