3OEH | Genus

Total Genus 15

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	15
sequence length	126
structure length	116
Chain Sequence	KLQFALPHETLYSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCVTAIEAENIKNLLAEAKKNVSSSDAREAAEAAIQVEVLENLQSV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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Viewer cachePut cache://localLOAD_/file/5cffc7ad6c004539fbbf8826/pdb.gz

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The Resolver thinks Pdb

loadScript /static/js/j2s/core/corebio.z.js

Time for openFile(/file/5cffc7ad6c004539fbbf8826/pdb.gz): 1130 ms

reading 116 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

116 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 25 ms

Adding embedded #jmolscript: select ({0:115});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Saccharomyces cerevisiae
publication title	Crystal structures of mutant forms of the yeast f1 ATPase reveal two modes of uncoupling. pubmed doi rcsb
molecule keywords	ATP synthase subunit alpha
total genus	15
structure length	116
sequence length	126
chains with identical sequence	Q, Z
ec nomenclature
pdb deposition date	2010-08-12

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
H	PF02823	ATP-synt_DE_N	ATP synthase, Delta/Epsilon chain, beta-sandwich domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.15.10	Mainly Beta	Sandwich	ATP Synthase; domain 1	F0F1 ATP synthase delta/epsilon subunit, N-terminal	3oehH01

1FS0E 3OE7H 3OAAH 3FKSH 2E5YA 2RQ6A 2RQ7A 2XNDH 1AQTA 2QE7H 1BSNA 5DN6I 2XOKH 3OEHH 1H8EH 2HLDH 2WSSH 3OFNH 4YXWH 4ASUH 5FL7H 1BSHA 2V7QH 1E79H
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 1FS0 E;  3OE7 H;  3OAA H;  3FKS H;  2E5Y A;  2RQ6 A;  2RQ7 A;  2XND H;  1AQT A;  2QE7 H;  1BSN A;  5DN6 I;  2XOK H;  3OEH H;  1H8E H;  2HLD H;  2WSS H;  3OFN H;  4YXW H;  4ASU H;  5FL7 H;  1BSH A;  2V7Q H;  1E79 H; 
#chains in the Genus database with same CATH topology
 1FS0 E;  3OE7 H;  3OAA H;  3FKS H;  2E5Y A;  2RQ6 A;  2RQ7 A;  2XND H;  1AQT A;  2QE7 H;  1BSN A;  5DN6 I;  2XOK H;  3OEH H;  1H8E H;  2HLD H;  2WSS H;  3OFN H;  4YXW H;  4ASU H;  5FL7 H;  1BSH A;  2V7Q H;  1E79 H; 
#chains in the Genus database with same CATH homology
 1FS0 E;  3OE7 H;  3OAA H;  3FKS H;  2E5Y A;  2RQ6 A;  2RQ7 A;  2XND H;  1AQT A;  2QE7 H;  1BSN A;  5DN6 I;  2XOK H;  3OEH H;  1H8E H;  2HLD H;  2WSS H;  3OFN H;  4YXW H;  4ASU H;  5FL7 H;  1BSH A;  2V7Q H;  1E79 H;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3OEHH

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations