3OEHH

Structure of four mutant forms of yeast f1 atpase: beta-v279f
Total Genus 15
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
15
sequence length
126
structure length
116
Chain Sequence
KLQFALPHETLYSEVTQVNLPAKSGRIGVLANHVPTVEQLLPGVVEVMEGSNSKKFFISGGFATVQPDSQLCVTAIEAENIKNLLAEAKKNVSSSDAREAAEAAIQVEVLENLQSV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structures of mutant forms of the yeast f1 ATPase reveal two modes of uncoupling.
pubmed doi rcsb
molecule keywords ATP synthase subunit alpha
molecule tags Hydrolase
source organism Saccharomyces cerevisiae
total genus 15
structure length 116
sequence length 126
chains with identical sequence Q, Z
ec nomenclature
pdb deposition date 2010-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
H PF02823 ATP-synt_DE_N ATP synthase, Delta/Epsilon chain, beta-sandwich domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.15.10 Mainly Beta Sandwich ATP Synthase; domain 1 F0F1 ATP synthase delta/epsilon subunit, N-terminal 3oehH01
5DN6I 3FKSH 3OAAH 4YXWH 1BSHA 2E5YA 2XNDH 1H8EH 2RQ7A 1E79H 3OE7H 4ASUH 2WSSH 3OFNH 2QE7H 2HLDH 2V7QH 5FL7H 1BSNA 2RQ6A 2XOKH 1AQTA 3OEHH 1FS0E
chains in the Genus database with same CATH superfamily
5DN6I 3FKSH 3OAAH 4YXWH 1BSHA 2E5YA 2XNDH 1H8EH 2RQ7A 1E79H 3OE7H 4ASUH 2WSSH 3OFNH 2QE7H 2HLDH 2V7QH 5FL7H 1BSNA 2RQ6A 2XOKH 1AQTA 3OEHH 1FS0E
chains in the Genus database with same CATH topology
5DN6I 3FKSH 3OAAH 4YXWH 1BSHA 2E5YA 2XNDH 1H8EH 2RQ7A 1E79H 3OE7H 4ASUH 2WSSH 3OFNH 2QE7H 2HLDH 2V7QH 5FL7H 1BSNA 2RQ6A 2XOKH 1AQTA 3OEHH 1FS0E
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DN6 I;  3FKS H;  3OAA H;  4YXW H;  1BSH A;  2E5Y A;  2XND H;  1H8E H;  2RQ7 A;  1E79 H;  3OE7 H;  4ASU H;  2WSS H;  3OFN H;  2QE7 H;  2HLD H;  2V7Q H;  5FL7 H;  1BSN A;  2RQ6 A;  2XOK H;  1AQT A;  3OEH H;  1FS0 E; 
#chains in the Genus database with same CATH topology
 5DN6 I;  3FKS H;  3OAA H;  4YXW H;  1BSH A;  2E5Y A;  2XND H;  1H8E H;  2RQ7 A;  1E79 H;  3OE7 H;  4ASU H;  2WSS H;  3OFN H;  2QE7 H;  2HLD H;  2V7Q H;  5FL7 H;  1BSN A;  2RQ6 A;  2XOK H;  1AQT A;  3OEH H;  1FS0 E; 
#chains in the Genus database with same CATH homology
 5DN6 I;  3FKS H;  3OAA H;  4YXW H;  1BSH A;  2E5Y A;  2XND H;  1H8E H;  2RQ7 A;  1E79 H;  3OE7 H;  4ASU H;  2WSS H;  3OFN H;  2QE7 H;  2HLD H;  2V7Q H;  5FL7 H;  1BSN A;  2RQ6 A;  2XOK H;  1AQT A;  3OEH H;  1FS0 E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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