3Q0X | Genus

Total Genus 56

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	56
sequence length	206
structure length	206
Chain Sequence	FDLSTATTLFWRPVPVHVKQQDREDVLEELTFRILTGVAKQNHNLRILRIHISSDSDLFFLHTLEVSEEDFQSLKNDQGILVDFASFPGKIISLLEKCILAQPGDSPRFQAVLTIRGGESVFKIVEINDEKQLPHITLAFRPGNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEVQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 206 atoms

ModelSet: haveSymmetry:false haveUnitcells:false haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

206 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

Time for creating model: 24 ms

Adding embedded #jmolscript: select ({0:205});backbone only;select *;

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Structural protein
source organism	Chlamydomonas reinhardtii
publication title	Structural basis of the 9-fold symmetry of centrioles. pubmed doi rcsb
molecule keywords	Centriole protein
total genus	56
structure length	206
sequence length	206
chains with identical sequence	B
ec nomenclature
pdb deposition date	2010-12-16

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF16531	SAS-6_N	Centriolar protein SAS N-terminal

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.170.210.20	Mainly Beta	Beta Complex	Dna Repair Protein Xrcc4; Chain: A, domain 1	Dna Repair Protein Xrcc4; Chain: A, domain 1	3q0xA01

3Q0XA 4GFCA 4CKMA 4CKPA 2Y3VA 4GFAA 4CKNA 3Q0YA 4G79A 4GEUA 2Y3WA 3PYIA 4GEXA
chains in the Genus database with same CATH superfamily

3RWRD 3Q0XA 4CKPA 4CKMA 4GEUA 1IK9A 2R9AA 1FU1A 3PYIA 4GEXA 5CJ4A 3SR2C 4G79A 3MUDA 5CHXA 3SR2A 3II6A 4GFCA 4GFAA 3Q0YA 2QM4A 2Y3WA 4XA4A 2Y3VA 4CKNA 3RWRA 5CJ0A
chains in the Genus database with same CATH topology

3Q0XA 4GFCA 4CKMA 4CKPA 2Y3VA 4GFAA 4CKNA 3Q0YA 4G79A 4GEUA 2Y3WA 3PYIA 4GEXA
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3Q0X A;  4GFC A;  4CKM A;  4CKP A;  2Y3V A;  4GFA A;  4CKN A;  3Q0Y A;  4G79 A;  4GEU A;  2Y3W A;  3PYI A;  4GEX A; 
#chains in the Genus database with same CATH topology
 3RWR D;  3Q0X A;  4CKP A;  4CKM A;  4GEU A;  1IK9 A;  2R9A A;  1FU1 A;  3PYI A;  4GEX A;  5CJ4 A;  3SR2 C;  4G79 A;  3MUD A;  5CHX A;  3SR2 A;  3II6 A;  4GFC A;  4GFA A;  3Q0Y A;  2QM4 A;  2Y3W A;  4XA4 A;  2Y3V A;  4CKN A;  3RWR A;  5CJ0 A; 
#chains in the Genus database with same CATH homology
 3Q0X A;  4GFC A;  4CKM A;  4CKP A;  2Y3V A;  4GFA A;  4CKN A;  3Q0Y A;  4G79 A;  4GEU A;  2Y3W A;  3PYI A;  4GEX A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3Q0XA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations