3R50A

Structure analysis of a wound-inducible lectin ipomoelin from sweet potato
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
153
structure length
153
Chain Sequence
ALQLAAHSDARSGPVGSNGGQFWSFRPVRPLNKIVLSFSGSPDQTLNLISITFSSNPTDIITVGGVGPEPLTYTETVNIDGDIIEISGMIANYKGYNVIRSIKFTTNKKEYGPYGANAGTPFNIKIPDGNKIVGFFGNSGWYVDAIGAYYTAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Ipomoelin, a jacalin-related lectin with a compact tetrameric association and versatile carbohydrate binding properties regulated by its N terminus.
pubmed doi rcsb
molecule tags Carbohydrate-binding protein
source organism Ipomoea batatas
molecule keywords Ipomoelin
total genus 25
structure length 153
sequence length 153
chains with identical sequence B, C, D, E
ec nomenclature
pdb deposition date 2011-03-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3r50A00
5BN6E 4R6QA 4DDNA 2NUOA 1M26A 4AKBA 3VZFA 1C3NA 2HYRA 2GUCA 1TP8A 3R52A 3O44A 4WOGA 2BN0A 1UH0A 4GX7A 1XXRA 3VY7A 3LL0A 1UGXA 1WS4A 3R50A 3MIVA 5JM1A 1XXQA 4R6RA 1UGWA 1OUWA 1VBPA 1TOQA 2NU5A 3VY6A 3P8SA 5J4TA 1C3MA 3WOBA 1XEZA 3LM1A 3VZEA 2BMYA 4R6OA 3R51A 3LLZA 1WS4C 4AKCA 1KU8A 3LLYA 1UGWC 1UH1A 3MITA 4MQ0A 1J4SA 1ZGRA 1J4TA 1JOTA 1WS5A 2GTYA 3LL1A 2GUEA 1UGYA 3LKYA 5J4XA 5J50A 1VBOA 2BMZA 1J4UA 3WOCA 1ZGSA 1X1VA 2HYQA 4R6NA 4PITA 4AKDA 2GUDA 5EXGA 3APAA 1WS5C 1UGYC 1PXDA 5AV7A 3AQGA 1JACA 3VZGA 1C3KA 4PIUA 1KUJA 3MIUA 2GUXA 2JZ4A 4AK4A 4R6PA 5J51A 4PIFA 4PIKA 3LL2A
chains in the Genus database with same CATH superfamily
5BN6E 4R6QA 4DDNA 2NUOA 1M26A 4AKBA 3VZFA 1C3NA 2HYRA 2GUCA 1TP8A 3R52A 3O44A 2QP2A 4WOGA 1I5PA 2BN0A 1UH0A 3EB7A 4GX7A 4D8MA 1XXRA 3VY7A 3LL0A 1CIYA 1UGXA 1WS4A 3R50A 3MIVA 5JM1A 1XXQA 4R6RA 1UGWA 1OUWA 1VBPA 1TOQA 2NU5A 3VY6A 3P8SA 5J4TA 1C3MA 1W99A 4QX0A 3WOBA 1XEZA 3LM1A 3VZEA 2BMYA 4QX2A 4R6OA 3R51A 3LLZA 1WS4C 4AKCA 1KU8A 3LLYA 1UGWC 1UH1A 3MITA 4MQ0A 1J4SA 4ARYA 1ZGRA 1J4TA 1VMOA 1JOTA 1WS5A 2GTYA 3LL1A 2GUEA 1UGYA 3LKYA 4W8JA 5J4XA 5J50A 1VBOA 2BMZA 1J4UA 3WOCA 1ZGSA 1X1VA 2HYQA 4R6NA 4PITA 4AKDA 2GUDA 5EXGA 3APAA 1WS5C 1UGYC 1PXDA 5AV7A 1DLCA 3AQGA 3TOWA 1JACA 3VZGA 1C3KA 4MOAA 4PIUA 1KUJA 4QX1A 4ARXA 3MIUA 2C9KA 1JI6A 2GUXA 2JZ4A 4AK4A 4R6PA 5J51A 4QX3A 4PIFA 4PIKA 3LL2A
chains in the Genus database with same CATH topology
5BN6E 4R6QA 4DDNA 2NUOA 1M26A 4AKBA 3VZFA 1C3NA 2HYRA 2GUCA 1TP8A 3R52A 3O44A 4WOGA 2BN0A 1UH0A 4GX7A 1XXRA 3VY7A 3LL0A 1UGXA 1WS4A 3R50A 3MIVA 5JM1A 1XXQA 4R6RA 1UGWA 1OUWA 1VBPA 1TOQA 2NU5A 3VY6A 3P8SA 5J4TA 1C3MA 3WOBA 1XEZA 3LM1A 3VZEA 2BMYA 4R6OA 3R51A 3LLZA 1WS4C 4AKCA 1KU8A 3LLYA 1UGWC 1UH1A 3MITA 4MQ0A 1J4SA 1ZGRA 1J4TA 1JOTA 1WS5A 2GTYA 3LL1A 2GUEA 1UGYA 3LKYA 5J4XA 5J50A 1VBOA 2BMZA 1J4UA 3WOCA 1ZGSA 1X1VA 2HYQA 4R6NA 4PITA 4AKDA 2GUDA 5EXGA 3APAA 1WS5C 1UGYC 1PXDA 5AV7A 3AQGA 1JACA 3VZGA 1C3KA 4PIUA 1KUJA 3MIUA 2GUXA 2JZ4A 4AK4A 4R6PA 5J51A 4PIFA 4PIKA 3LL2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5BN6 E;  4R6Q A;  4DDN A;  2NUO A;  1M26 A;  4AKB A;  3VZF A;  1C3N A;  2HYR A;  2GUC A;  1TP8 A;  3R52 A;  3O44 A;  4WOG A;  2BN0 A;  1UH0 A;  4GX7 A;  1XXR A;  3VY7 A;  3LL0 A;  1UGX A;  1WS4 A;  3R50 A;  3MIV A;  5JM1 A;  1XXQ A;  4R6R A;  1UGW A;  1OUW A;  1VBP A;  1TOQ A;  2NU5 A;  3VY6 A;  3P8S A;  5J4T A;  1C3M A;  3WOB A;  1XEZ A;  3LM1 A;  3VZE A;  2BMY A;  4R6O A;  3R51 A;  3LLZ A;  1WS4 C;  4AKC A;  1KU8 A;  3LLY A;  1UGW C;  1UH1 A;  3MIT A;  4MQ0 A;  1J4S A;  1ZGR A;  1J4T A;  1JOT A;  1WS5 A;  2GTY A;  3LL1 A;  2GUE A;  1UGY A;  3LKY A;  5J4X A;  5J50 A;  1VBO A;  2BMZ A;  1J4U A;  3WOC A;  1ZGS A;  1X1V A;  2HYQ A;  4R6N A;  4PIT A;  4AKD A;  2GUD A;  5EXG A;  3APA A;  1WS5 C;  1UGY C;  1PXD A;  5AV7 A;  3AQG A;  1JAC A;  3VZG A;  1C3K A;  4PIU A;  1KUJ A;  3MIU A;  2GUX A;  2JZ4 A;  4AK4 A;  4R6P A;  5J51 A;  4PIF A;  4PIK A;  3LL2 A; 
#chains in the Genus database with same CATH topology
 5BN6 E;  4R6Q A;  4DDN A;  2NUO A;  1M26 A;  4AKB A;  3VZF A;  1C3N A;  2HYR A;  2GUC A;  1TP8 A;  3R52 A;  3O44 A;  2QP2 A;  4WOG A;  1I5P A;  2BN0 A;  1UH0 A;  3EB7 A;  4GX7 A;  4D8M A;  1XXR A;  3VY7 A;  3LL0 A;  1CIY A;  1UGX A;  1WS4 A;  3R50 A;  3MIV A;  5JM1 A;  1XXQ A;  4R6R A;  1UGW A;  1OUW A;  1VBP A;  1TOQ A;  2NU5 A;  3VY6 A;  3P8S A;  5J4T A;  1C3M A;  1W99 A;  4QX0 A;  3WOB A;  1XEZ A;  3LM1 A;  3VZE A;  2BMY A;  4QX2 A;  4R6O A;  3R51 A;  3LLZ A;  1WS4 C;  4AKC A;  1KU8 A;  3LLY A;  1UGW C;  1UH1 A;  3MIT A;  4MQ0 A;  1J4S A;  4ARY A;  1ZGR A;  1J4T A;  1VMO A;  1JOT A;  1WS5 A;  2GTY A;  3LL1 A;  2GUE A;  1UGY A;  3LKY A;  4W8J A;  5J4X A;  5J50 A;  1VBO A;  2BMZ A;  1J4U A;  3WOC A;  1ZGS A;  1X1V A;  2HYQ A;  4R6N A;  4PIT A;  4AKD A;  2GUD A;  5EXG A;  3APA A;  1WS5 C;  1UGY C;  1PXD A;  5AV7 A;  1DLC A;  3AQG A;  3TOW A;  1JAC A;  3VZG A;  1C3K A;  4MOA A;  4PIU A;  1KUJ A;  4QX1 A;  4ARX A;  3MIU A;  2C9K A;  1JI6 A;  2GUX A;  2JZ4 A;  4AK4 A;  4R6P A;  5J51 A;  4QX3 A;  4PIF A;  4PIK A;  3LL2 A; 
#chains in the Genus database with same CATH homology
 5BN6 E;  4R6Q A;  4DDN A;  2NUO A;  1M26 A;  4AKB A;  3VZF A;  1C3N A;  2HYR A;  2GUC A;  1TP8 A;  3R52 A;  3O44 A;  4WOG A;  2BN0 A;  1UH0 A;  4GX7 A;  1XXR A;  3VY7 A;  3LL0 A;  1UGX A;  1WS4 A;  3R50 A;  3MIV A;  5JM1 A;  1XXQ A;  4R6R A;  1UGW A;  1OUW A;  1VBP A;  1TOQ A;  2NU5 A;  3VY6 A;  3P8S A;  5J4T A;  1C3M A;  3WOB A;  1XEZ A;  3LM1 A;  3VZE A;  2BMY A;  4R6O A;  3R51 A;  3LLZ A;  1WS4 C;  4AKC A;  1KU8 A;  3LLY A;  1UGW C;  1UH1 A;  3MIT A;  4MQ0 A;  1J4S A;  1ZGR A;  1J4T A;  1JOT A;  1WS5 A;  2GTY A;  3LL1 A;  2GUE A;  1UGY A;  3LKY A;  5J4X A;  5J50 A;  1VBO A;  2BMZ A;  1J4U A;  3WOC A;  1ZGS A;  1X1V A;  2HYQ A;  4R6N A;  4PIT A;  4AKD A;  2GUD A;  5EXG A;  3APA A;  1WS5 C;  1UGY C;  1PXD A;  5AV7 A;  3AQG A;  1JAC A;  3VZG A;  1C3K A;  4PIU A;  1KUJ A;  3MIU A;  2GUX A;  2JZ4 A;  4AK4 A;  4R6P A;  5J51 A;  4PIF A;  4PIK A;  3LL2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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