3R51A

Structure analysis of a wound-inducible lectin ipomoelin from sweet potato
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
151
structure length
151
Chain Sequence
QLAAHSDARSGPVGSNGGQFWSFRPVRPLNKIVLSFSGSPDQTLNLISITFSSNPTDIITVGGVGPEPLTYTETVNIDGDIIEISGMIANYKGYNVIRSIKFTTNKKEYGPYGANAGTPFNIKIPDGNKIVGFFGNSGWYVDAIGAYYTAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Ipomoelin, a jacalin-related lectin with a compact tetrameric association and versatile carbohydrate binding properties regulated by its N terminus.
pubmed doi rcsb
molecule tags Carbohydrate-binding protein
source organism Ipomoea batatas
molecule keywords Ipomoelin
total genus 23
structure length 151
sequence length 151
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-03-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3r51A00
5J4TA 1X1VA 1ZGSA 3MIUA 4PIFA 1XXRA 4MQ0A 1TP8A 4PIKA 1VBPA 1J4UA 3WOCA 3VZFA 2BMYA 1XEZA 5J51A 5JM1A 1WS4C 1M26A 2HYQA 1UGXA 2GUDA 4R6PA 2NUOA 4R6QA 5BN6E 1UGWA 2GUXA 3LKYA 3VZEA 4AKDA 3LL0A 4R6OA 1VBOA 3LL1A 4R6NA 2BMZA 1C3KA 5J50A 1KUJA 4R6RA 3VZGA 2NU5A 4GX7A 3VY7A 1JACA 1WS4A 1C3MA 4PIUA 3MIVA 1J4SA 3VY6A 1UGYC 2BN0A 1TOQA 4DDNA 1UH1A 1KU8A 5J4XA 3LLZA 1PXDA 4AKBA 3R52A 5AV7A 2GTYA 4WOGA 1WS5C 3P8SA 3R51A 1ZGRA 4AK4A 3LLYA 3APAA 2GUEA 4PITA 1UH0A 2GUCA 4AKCA 5EXGA 1UGYA 1C3NA 2HYRA 3LM1A 3WOBA 3O44A 1JOTA 3LL2A 1WS5A 3R50A 3AQGA 1UGWC 2JZ4A 1XXQA 1OUWA 1J4TA 3MITA
chains in the Genus database with same CATH superfamily
5J4TA 1X1VA 1ZGSA 3MIUA 4PIFA 4ARYA 1XXRA 4QX2A 4MQ0A 1TP8A 4PIKA 1VBPA 4MOAA 1J4UA 3WOCA 3VZFA 2BMYA 1XEZA 5J51A 5JM1A 1WS4C 1M26A 2HYQA 4ARXA 1UGXA 2GUDA 4R6PA 2NUOA 4R6QA 5BN6E 1UGWA 2QP2A 1JI6A 2GUXA 3LKYA 3VZEA 4AKDA 3LL0A 4R6OA 1VBOA 3LL1A 3TOWA 1VMOA 4R6NA 2BMZA 1I5PA 1C3KA 5J50A 1KUJA 4R6RA 3VZGA 2NU5A 4GX7A 3VY7A 1JACA 1WS4A 4QX3A 1C3MA 4PIUA 3MIVA 3EB7A 1J4SA 3VY6A 1UGYC 2BN0A 1TOQA 4D8MA 4DDNA 1UH1A 1KU8A 5J4XA 3LLZA 1PXDA 4AKBA 3R52A 5AV7A 2GTYA 4WOGA 1CIYA 1WS5C 3P8SA 3R51A 1DLCA 1ZGRA 4AK4A 3LLYA 4QX0A 4W8JA 3APAA 2GUEA 4PITA 1UH0A 2GUCA 4AKCA 5EXGA 1UGYA 1C3NA 2HYRA 3LM1A 3WOBA 3O44A 1JOTA 2C9KA 3LL2A 1WS5A 3R50A 3AQGA 1UGWC 4QX1A 1W99A 2JZ4A 1XXQA 1OUWA 1J4TA 3MITA
chains in the Genus database with same CATH topology
5J4TA 1X1VA 1ZGSA 3MIUA 4PIFA 1XXRA 4MQ0A 1TP8A 4PIKA 1VBPA 1J4UA 3WOCA 3VZFA 2BMYA 1XEZA 5J51A 5JM1A 1WS4C 1M26A 2HYQA 1UGXA 2GUDA 4R6PA 2NUOA 4R6QA 5BN6E 1UGWA 2GUXA 3LKYA 3VZEA 4AKDA 3LL0A 4R6OA 1VBOA 3LL1A 4R6NA 2BMZA 1C3KA 5J50A 1KUJA 4R6RA 3VZGA 2NU5A 4GX7A 3VY7A 1JACA 1WS4A 1C3MA 4PIUA 3MIVA 1J4SA 3VY6A 1UGYC 2BN0A 1TOQA 4DDNA 1UH1A 1KU8A 5J4XA 3LLZA 1PXDA 4AKBA 3R52A 5AV7A 2GTYA 4WOGA 1WS5C 3P8SA 3R51A 1ZGRA 4AK4A 3LLYA 3APAA 2GUEA 4PITA 1UH0A 2GUCA 4AKCA 5EXGA 1UGYA 1C3NA 2HYRA 3LM1A 3WOBA 3O44A 1JOTA 3LL2A 1WS5A 3R50A 3AQGA 1UGWC 2JZ4A 1XXQA 1OUWA 1J4TA 3MITA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5J4T A;  1X1V A;  1ZGS A;  3MIU A;  4PIF A;  1XXR A;  4MQ0 A;  1TP8 A;  4PIK A;  1VBP A;  1J4U A;  3WOC A;  3VZF A;  2BMY A;  1XEZ A;  5J51 A;  5JM1 A;  1WS4 C;  1M26 A;  2HYQ A;  1UGX A;  2GUD A;  4R6P A;  2NUO A;  4R6Q A;  5BN6 E;  1UGW A;  2GUX A;  3LKY A;  3VZE A;  4AKD A;  3LL0 A;  4R6O A;  1VBO A;  3LL1 A;  4R6N A;  2BMZ A;  1C3K A;  5J50 A;  1KUJ A;  4R6R A;  3VZG A;  2NU5 A;  4GX7 A;  3VY7 A;  1JAC A;  1WS4 A;  1C3M A;  4PIU A;  3MIV A;  1J4S A;  3VY6 A;  1UGY C;  2BN0 A;  1TOQ A;  4DDN A;  1UH1 A;  1KU8 A;  5J4X A;  3LLZ A;  1PXD A;  4AKB A;  3R52 A;  5AV7 A;  2GTY A;  4WOG A;  1WS5 C;  3P8S A;  3R51 A;  1ZGR A;  4AK4 A;  3LLY A;  3APA A;  2GUE A;  4PIT A;  1UH0 A;  2GUC A;  4AKC A;  5EXG A;  1UGY A;  1C3N A;  2HYR A;  3LM1 A;  3WOB A;  3O44 A;  1JOT A;  3LL2 A;  1WS5 A;  3R50 A;  3AQG A;  1UGW C;  2JZ4 A;  1XXQ A;  1OUW A;  1J4T A;  3MIT A; 
#chains in the Genus database with same CATH topology
 5J4T A;  1X1V A;  1ZGS A;  3MIU A;  4PIF A;  4ARY A;  1XXR A;  4QX2 A;  4MQ0 A;  1TP8 A;  4PIK A;  1VBP A;  4MOA A;  1J4U A;  3WOC A;  3VZF A;  2BMY A;  1XEZ A;  5J51 A;  5JM1 A;  1WS4 C;  1M26 A;  2HYQ A;  4ARX A;  1UGX A;  2GUD A;  4R6P A;  2NUO A;  4R6Q A;  5BN6 E;  1UGW A;  2QP2 A;  1JI6 A;  2GUX A;  3LKY A;  3VZE A;  4AKD A;  3LL0 A;  4R6O A;  1VBO A;  3LL1 A;  3TOW A;  1VMO A;  4R6N A;  2BMZ A;  1I5P A;  1C3K A;  5J50 A;  1KUJ A;  4R6R A;  3VZG A;  2NU5 A;  4GX7 A;  3VY7 A;  1JAC A;  1WS4 A;  4QX3 A;  1C3M A;  4PIU A;  3MIV A;  3EB7 A;  1J4S A;  3VY6 A;  1UGY C;  2BN0 A;  1TOQ A;  4D8M A;  4DDN A;  1UH1 A;  1KU8 A;  5J4X A;  3LLZ A;  1PXD A;  4AKB A;  3R52 A;  5AV7 A;  2GTY A;  4WOG A;  1CIY A;  1WS5 C;  3P8S A;  3R51 A;  1DLC A;  1ZGR A;  4AK4 A;  3LLY A;  4QX0 A;  4W8J A;  3APA A;  2GUE A;  4PIT A;  1UH0 A;  2GUC A;  4AKC A;  5EXG A;  1UGY A;  1C3N A;  2HYR A;  3LM1 A;  3WOB A;  3O44 A;  1JOT A;  2C9K A;  3LL2 A;  1WS5 A;  3R50 A;  3AQG A;  1UGW C;  4QX1 A;  1W99 A;  2JZ4 A;  1XXQ A;  1OUW A;  1J4T A;  3MIT A; 
#chains in the Genus database with same CATH homology
 5J4T A;  1X1V A;  1ZGS A;  3MIU A;  4PIF A;  1XXR A;  4MQ0 A;  1TP8 A;  4PIK A;  1VBP A;  1J4U A;  3WOC A;  3VZF A;  2BMY A;  1XEZ A;  5J51 A;  5JM1 A;  1WS4 C;  1M26 A;  2HYQ A;  1UGX A;  2GUD A;  4R6P A;  2NUO A;  4R6Q A;  5BN6 E;  1UGW A;  2GUX A;  3LKY A;  3VZE A;  4AKD A;  3LL0 A;  4R6O A;  1VBO A;  3LL1 A;  4R6N A;  2BMZ A;  1C3K A;  5J50 A;  1KUJ A;  4R6R A;  3VZG A;  2NU5 A;  4GX7 A;  3VY7 A;  1JAC A;  1WS4 A;  1C3M A;  4PIU A;  3MIV A;  1J4S A;  3VY6 A;  1UGY C;  2BN0 A;  1TOQ A;  4DDN A;  1UH1 A;  1KU8 A;  5J4X A;  3LLZ A;  1PXD A;  4AKB A;  3R52 A;  5AV7 A;  2GTY A;  4WOG A;  1WS5 C;  3P8S A;  3R51 A;  1ZGR A;  4AK4 A;  3LLY A;  3APA A;  2GUE A;  4PIT A;  1UH0 A;  2GUC A;  4AKC A;  5EXG A;  1UGY A;  1C3N A;  2HYR A;  3LM1 A;  3WOB A;  3O44 A;  1JOT A;  3LL2 A;  1WS5 A;  3R50 A;  3AQG A;  1UGW C;  2JZ4 A;  1XXQ A;  1OUW A;  1J4T A;  3MIT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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