3R52A

Structure analysis of a wound-inducible lectin ipomoelin from sweet potato
Total Genus 27
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
152
structure length
152
Chain Sequence
LQLAAHSDARSGPVGSNGGQFWSFRPVRPLNKIVLSFSGSPDQTLNLISITFSSNPTDIITVGGVGPEPLTYTETVNIDGDIIEISGMIANYKGYNVIRSIKFTTNKKEYGPYGANAGTPFNIKIPDGNKIVGFFGNSGWYVDAIGAYYTAK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Ipomoelin, a jacalin-related lectin with a compact tetrameric association and versatile carbohydrate binding properties regulated by its N terminus.
pubmed doi rcsb
molecule tags Carbohydrate-binding protein
source organism Ipomoea batatas
molecule keywords Ipomoelin
total genus 27
structure length 152
sequence length 152
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-03-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3r52A00
3VZEA 1VBOA 2GUXA 1WS4A 3VZGA 3LL2A 1X1VA 2BMZA 5BN6E 5EXGA 3LLYA 2GUCA 1KUJA 1M26A 1XXRA 3LLZA 1JACA 1UGWA 1UGWC 3LL1A 4R6NA 1UH0A 3VZFA 1OUWA 1XEZA 4AKBA 4R6RA 1UGYA 1WS4C 5AV7A 3LL0A 1TOQA 1C3MA 1KU8A 4R6PA 1ZGRA 4AKDA 3R52A 3APAA 3MIVA 1PXDA 1C3NA 3O44A 4PIUA 5J50A 2BMYA 3LKYA 3R51A 3VY6A 3AQGA 2NU5A 3P8SA 2HYRA 1C3KA 2GTYA 3WOBA 1J4UA 3WOCA 4AKCA 4DDNA 2JZ4A 1ZGSA 2NUOA 2GUDA 1UGYC 1UGXA 1J4SA 3MITA 5JM1A 5J4TA 4PITA 3VY7A 1UH1A 2BN0A 4PIKA 4R6QA 4WOGA 2GUEA 1J4TA 2HYQA 1VBPA 4MQ0A 1JOTA 3LM1A 4GX7A 1WS5A 1WS5C 5J4XA 5J51A 3R50A 4R6OA 4PIFA 4AK4A 3MIUA 1XXQA 1TP8A
chains in the Genus database with same CATH superfamily
3VZEA 1VBOA 2GUXA 1WS4A 3TOWA 3VZGA 3LL2A 1X1VA 2BMZA 5BN6E 5EXGA 3LLYA 2GUCA 1KUJA 1M26A 1XXRA 3LLZA 1JACA 2C9KA 1UGWA 1UGWC 3LL1A 4R6NA 1UH0A 4QX1A 3VZFA 1OUWA 1XEZA 4AKBA 4R6RA 1UGYA 1WS4C 5AV7A 3LL0A 1TOQA 1C3MA 1KU8A 4R6PA 1ZGRA 4AKDA 3R52A 3APAA 3MIVA 1PXDA 1C3NA 3O44A 4PIUA 4D8MA 5J50A 1W99A 2QP2A 2BMYA 3LKYA 3R51A 4ARXA 3VY6A 3AQGA 2NU5A 3P8SA 2HYRA 1C3KA 2GTYA 3WOBA 1J4UA 3WOCA 1VMOA 4AKCA 4DDNA 2JZ4A 1ZGSA 4ARYA 3EB7A 2NUOA 2GUDA 1UGYC 1UGXA 1J4SA 3MITA 5JM1A 5J4TA 4PITA 3VY7A 1DLCA 1UH1A 2BN0A 1I5PA 4PIKA 4QX2A 4R6QA 4QX0A 4WOGA 2GUEA 1J4TA 1JI6A 2HYQA 1VBPA 4MQ0A 1JOTA 4W8JA 3LM1A 4MOAA 4QX3A 4GX7A 1WS5A 1WS5C 5J4XA 5J51A 3R50A 4R6OA 4PIFA 4AK4A 3MIUA 1XXQA 1CIYA 1TP8A
chains in the Genus database with same CATH topology
3VZEA 1VBOA 2GUXA 1WS4A 3VZGA 3LL2A 1X1VA 2BMZA 5BN6E 5EXGA 3LLYA 2GUCA 1KUJA 1M26A 1XXRA 3LLZA 1JACA 1UGWA 1UGWC 3LL1A 4R6NA 1UH0A 3VZFA 1OUWA 1XEZA 4AKBA 4R6RA 1UGYA 1WS4C 5AV7A 3LL0A 1TOQA 1C3MA 1KU8A 4R6PA 1ZGRA 4AKDA 3R52A 3APAA 3MIVA 1PXDA 1C3NA 3O44A 4PIUA 5J50A 2BMYA 3LKYA 3R51A 3VY6A 3AQGA 2NU5A 3P8SA 2HYRA 1C3KA 2GTYA 3WOBA 1J4UA 3WOCA 4AKCA 4DDNA 2JZ4A 1ZGSA 2NUOA 2GUDA 1UGYC 1UGXA 1J4SA 3MITA 5JM1A 5J4TA 4PITA 3VY7A 1UH1A 2BN0A 4PIKA 4R6QA 4WOGA 2GUEA 1J4TA 2HYQA 1VBPA 4MQ0A 1JOTA 3LM1A 4GX7A 1WS5A 1WS5C 5J4XA 5J51A 3R50A 4R6OA 4PIFA 4AK4A 3MIUA 1XXQA 1TP8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VZE A;  1VBO A;  2GUX A;  1WS4 A;  3VZG A;  3LL2 A;  1X1V A;  2BMZ A;  5BN6 E;  5EXG A;  3LLY A;  2GUC A;  1KUJ A;  1M26 A;  1XXR A;  3LLZ A;  1JAC A;  1UGW A;  1UGW C;  3LL1 A;  4R6N A;  1UH0 A;  3VZF A;  1OUW A;  1XEZ A;  4AKB A;  4R6R A;  1UGY A;  1WS4 C;  5AV7 A;  3LL0 A;  1TOQ A;  1C3M A;  1KU8 A;  4R6P A;  1ZGR A;  4AKD A;  3R52 A;  3APA A;  3MIV A;  1PXD A;  1C3N A;  3O44 A;  4PIU A;  5J50 A;  2BMY A;  3LKY A;  3R51 A;  3VY6 A;  3AQG A;  2NU5 A;  3P8S A;  2HYR A;  1C3K A;  2GTY A;  3WOB A;  1J4U A;  3WOC A;  4AKC A;  4DDN A;  2JZ4 A;  1ZGS A;  2NUO A;  2GUD A;  1UGY C;  1UGX A;  1J4S A;  3MIT A;  5JM1 A;  5J4T A;  4PIT A;  3VY7 A;  1UH1 A;  2BN0 A;  4PIK A;  4R6Q A;  4WOG A;  2GUE A;  1J4T A;  2HYQ A;  1VBP A;  4MQ0 A;  1JOT A;  3LM1 A;  4GX7 A;  1WS5 A;  1WS5 C;  5J4X A;  5J51 A;  3R50 A;  4R6O A;  4PIF A;  4AK4 A;  3MIU A;  1XXQ A;  1TP8 A; 
#chains in the Genus database with same CATH topology
 3VZE A;  1VBO A;  2GUX A;  1WS4 A;  3TOW A;  3VZG A;  3LL2 A;  1X1V A;  2BMZ A;  5BN6 E;  5EXG A;  3LLY A;  2GUC A;  1KUJ A;  1M26 A;  1XXR A;  3LLZ A;  1JAC A;  2C9K A;  1UGW A;  1UGW C;  3LL1 A;  4R6N A;  1UH0 A;  4QX1 A;  3VZF A;  1OUW A;  1XEZ A;  4AKB A;  4R6R A;  1UGY A;  1WS4 C;  5AV7 A;  3LL0 A;  1TOQ A;  1C3M A;  1KU8 A;  4R6P A;  1ZGR A;  4AKD A;  3R52 A;  3APA A;  3MIV A;  1PXD A;  1C3N A;  3O44 A;  4PIU A;  4D8M A;  5J50 A;  1W99 A;  2QP2 A;  2BMY A;  3LKY A;  3R51 A;  4ARX A;  3VY6 A;  3AQG A;  2NU5 A;  3P8S A;  2HYR A;  1C3K A;  2GTY A;  3WOB A;  1J4U A;  3WOC A;  1VMO A;  4AKC A;  4DDN A;  2JZ4 A;  1ZGS A;  4ARY A;  3EB7 A;  2NUO A;  2GUD A;  1UGY C;  1UGX A;  1J4S A;  3MIT A;  5JM1 A;  5J4T A;  4PIT A;  3VY7 A;  1DLC A;  1UH1 A;  2BN0 A;  1I5P A;  4PIK A;  4QX2 A;  4R6Q A;  4QX0 A;  4WOG A;  2GUE A;  1J4T A;  1JI6 A;  2HYQ A;  1VBP A;  4MQ0 A;  1JOT A;  4W8J A;  3LM1 A;  4MOA A;  4QX3 A;  4GX7 A;  1WS5 A;  1WS5 C;  5J4X A;  5J51 A;  3R50 A;  4R6O A;  4PIF A;  4AK4 A;  3MIU A;  1XXQ A;  1CIY A;  1TP8 A; 
#chains in the Genus database with same CATH homology
 3VZE A;  1VBO A;  2GUX A;  1WS4 A;  3VZG A;  3LL2 A;  1X1V A;  2BMZ A;  5BN6 E;  5EXG A;  3LLY A;  2GUC A;  1KUJ A;  1M26 A;  1XXR A;  3LLZ A;  1JAC A;  1UGW A;  1UGW C;  3LL1 A;  4R6N A;  1UH0 A;  3VZF A;  1OUW A;  1XEZ A;  4AKB A;  4R6R A;  1UGY A;  1WS4 C;  5AV7 A;  3LL0 A;  1TOQ A;  1C3M A;  1KU8 A;  4R6P A;  1ZGR A;  4AKD A;  3R52 A;  3APA A;  3MIV A;  1PXD A;  1C3N A;  3O44 A;  4PIU A;  5J50 A;  2BMY A;  3LKY A;  3R51 A;  3VY6 A;  3AQG A;  2NU5 A;  3P8S A;  2HYR A;  1C3K A;  2GTY A;  3WOB A;  1J4U A;  3WOC A;  4AKC A;  4DDN A;  2JZ4 A;  1ZGS A;  2NUO A;  2GUD A;  1UGY C;  1UGX A;  1J4S A;  3MIT A;  5JM1 A;  5J4T A;  4PIT A;  3VY7 A;  1UH1 A;  2BN0 A;  4PIK A;  4R6Q A;  4WOG A;  2GUE A;  1J4T A;  2HYQ A;  1VBP A;  4MQ0 A;  1JOT A;  3LM1 A;  4GX7 A;  1WS5 A;  1WS5 C;  5J4X A;  5J51 A;  3R50 A;  4R6O A;  4PIF A;  4AK4 A;  3MIU A;  1XXQ A;  1TP8 A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...