3R52A

Structure analysis of a wound-inducible lectin ipomoelin from sweet potato
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
152
structure length
152
Chain Sequence
LQLAAHSDARSGPVGSNGGQFWSFRPVRPLNKIVLSFSGSPDQTLNLISITFSSNPTDIITVGGVGPEPLTYTETVNIDGDIIEISGMIANYKGYNVIRSIKFTTNKKEYGPYGANAGTPFNIKIPDGNKIVGFFGNSGWYVDAIGAYYTAK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Ipomoelin, a jacalin-related lectin with a compact tetrameric association and versatile carbohydrate binding properties regulated by its N terminus.
pubmed doi rcsb
molecule tags Carbohydrate-binding protein
source organism Ipomoea batatas
molecule keywords Ipomoelin
total genus 27
structure length 152
sequence length 152
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-03-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3r52A00
1XEZA 4PITA 1VBPA 5J4TA 3LKYA 1X1VA 3MIUA 2NUOA 4MQ0A 2NU5A 4AKCA 5J51A 1JACA 1J4SA 4R6PA 5EXGA 2HYQA 1VBOA 1TP8A 4AKBA 1C3NA 3WOCA 1WS5C 3P8SA 2GUEA 1TOQA 1C3MA 1KU8A 3AQGA 3VY6A 1UH1A 3LL1A 1KUJA 2GUXA 1ZGSA 2GUDA 3VY7A 3R52A 1WS5A 1C3KA 5AV7A 2GUCA 4R6QA 3R51A 1XXQA 3VZEA 3MITA 3MIVA 1UGWA 4PIFA 4DDNA 1M26A 3APAA 3O44A 1UGWC 4R6RA 5BN6E 2BMYA 1UGXA 1UGYA 1J4TA 1WS4A 3VZFA 3LLZA 4WOGA 3R50A 1UGYC 4AKDA 1WS4C 3LM1A 4R6NA 1OUWA 3VZGA 4AK4A 5J4XA 5JM1A 1XXRA 2JZ4A 2HYRA 5J50A 2GTYA 4R6OA 1JOTA 2BMZA 1J4UA 1PXDA 4PIUA 1UH0A 3LL0A 3WOBA 3LLYA 4GX7A 1ZGRA 2BN0A 4PIKA 3LL2A
chains in the Genus database with same CATH superfamily
1DLCA 1XEZA 4PITA 4QX1A 1VBPA 5J4TA 3LKYA 1X1VA 3MIUA 2NUOA 4MQ0A 2NU5A 1VMOA 4AKCA 5J51A 1W99A 1JACA 1J4SA 4R6PA 5EXGA 2HYQA 2QP2A 1VBOA 4QX3A 1TP8A 4AKBA 1C3NA 3WOCA 1WS5C 3P8SA 2GUEA 1TOQA 1C3MA 1KU8A 4D8MA 3AQGA 3VY6A 1UH1A 3LL1A 1KUJA 2GUXA 1ZGSA 2GUDA 3VY7A 3R52A 1WS5A 1C3KA 4ARYA 5AV7A 2GUCA 4R6QA 3R51A 1JI6A 1XXQA 3VZEA 3MITA 4W8JA 3MIVA 1UGWA 3TOWA 4PIFA 4DDNA 2C9KA 1CIYA 4QX2A 1M26A 1I5PA 3APAA 3O44A 1UGWC 4MOAA 4R6RA 5BN6E 2BMYA 1UGXA 1UGYA 1J4TA 1WS4A 3VZFA 3LLZA 4WOGA 3R50A 1UGYC 4AKDA 1WS4C 3LM1A 4R6NA 1OUWA 3VZGA 4AK4A 5J4XA 5JM1A 1XXRA 4ARXA 2JZ4A 2HYRA 3EB7A 4QX0A 5J50A 2GTYA 4R6OA 1JOTA 2BMZA 1J4UA 1PXDA 4PIUA 1UH0A 3LL0A 3WOBA 3LLYA 4GX7A 1ZGRA 2BN0A 4PIKA 3LL2A
chains in the Genus database with same CATH topology
1XEZA 4PITA 1VBPA 5J4TA 3LKYA 1X1VA 3MIUA 2NUOA 4MQ0A 2NU5A 4AKCA 5J51A 1JACA 1J4SA 4R6PA 5EXGA 2HYQA 1VBOA 1TP8A 4AKBA 1C3NA 3WOCA 1WS5C 3P8SA 2GUEA 1TOQA 1C3MA 1KU8A 3AQGA 3VY6A 1UH1A 3LL1A 1KUJA 2GUXA 1ZGSA 2GUDA 3VY7A 3R52A 1WS5A 1C3KA 5AV7A 2GUCA 4R6QA 3R51A 1XXQA 3VZEA 3MITA 3MIVA 1UGWA 4PIFA 4DDNA 1M26A 3APAA 3O44A 1UGWC 4R6RA 5BN6E 2BMYA 1UGXA 1UGYA 1J4TA 1WS4A 3VZFA 3LLZA 4WOGA 3R50A 1UGYC 4AKDA 1WS4C 3LM1A 4R6NA 1OUWA 3VZGA 4AK4A 5J4XA 5JM1A 1XXRA 2JZ4A 2HYRA 5J50A 2GTYA 4R6OA 1JOTA 2BMZA 1J4UA 1PXDA 4PIUA 1UH0A 3LL0A 3WOBA 3LLYA 4GX7A 1ZGRA 2BN0A 4PIKA 3LL2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XEZ A;  4PIT A;  1VBP A;  5J4T A;  3LKY A;  1X1V A;  3MIU A;  2NUO A;  4MQ0 A;  2NU5 A;  4AKC A;  5J51 A;  1JAC A;  1J4S A;  4R6P A;  5EXG A;  2HYQ A;  1VBO A;  1TP8 A;  4AKB A;  1C3N A;  3WOC A;  1WS5 C;  3P8S A;  2GUE A;  1TOQ A;  1C3M A;  1KU8 A;  3AQG A;  3VY6 A;  1UH1 A;  3LL1 A;  1KUJ A;  2GUX A;  1ZGS A;  2GUD A;  3VY7 A;  3R52 A;  1WS5 A;  1C3K A;  5AV7 A;  2GUC A;  4R6Q A;  3R51 A;  1XXQ A;  3VZE A;  3MIT A;  3MIV A;  1UGW A;  4PIF A;  4DDN A;  1M26 A;  3APA A;  3O44 A;  1UGW C;  4R6R A;  5BN6 E;  2BMY A;  1UGX A;  1UGY A;  1J4T A;  1WS4 A;  3VZF A;  3LLZ A;  4WOG A;  3R50 A;  1UGY C;  4AKD A;  1WS4 C;  3LM1 A;  4R6N A;  1OUW A;  3VZG A;  4AK4 A;  5J4X A;  5JM1 A;  1XXR A;  2JZ4 A;  2HYR A;  5J50 A;  2GTY A;  4R6O A;  1JOT A;  2BMZ A;  1J4U A;  1PXD A;  4PIU A;  1UH0 A;  3LL0 A;  3WOB A;  3LLY A;  4GX7 A;  1ZGR A;  2BN0 A;  4PIK A;  3LL2 A; 
#chains in the Genus database with same CATH topology
 1DLC A;  1XEZ A;  4PIT A;  4QX1 A;  1VBP A;  5J4T A;  3LKY A;  1X1V A;  3MIU A;  2NUO A;  4MQ0 A;  2NU5 A;  1VMO A;  4AKC A;  5J51 A;  1W99 A;  1JAC A;  1J4S A;  4R6P A;  5EXG A;  2HYQ A;  2QP2 A;  1VBO A;  4QX3 A;  1TP8 A;  4AKB A;  1C3N A;  3WOC A;  1WS5 C;  3P8S A;  2GUE A;  1TOQ A;  1C3M A;  1KU8 A;  4D8M A;  3AQG A;  3VY6 A;  1UH1 A;  3LL1 A;  1KUJ A;  2GUX A;  1ZGS A;  2GUD A;  3VY7 A;  3R52 A;  1WS5 A;  1C3K A;  4ARY A;  5AV7 A;  2GUC A;  4R6Q A;  3R51 A;  1JI6 A;  1XXQ A;  3VZE A;  3MIT A;  4W8J A;  3MIV A;  1UGW A;  3TOW A;  4PIF A;  4DDN A;  2C9K A;  1CIY A;  4QX2 A;  1M26 A;  1I5P A;  3APA A;  3O44 A;  1UGW C;  4MOA A;  4R6R A;  5BN6 E;  2BMY A;  1UGX A;  1UGY A;  1J4T A;  1WS4 A;  3VZF A;  3LLZ A;  4WOG A;  3R50 A;  1UGY C;  4AKD A;  1WS4 C;  3LM1 A;  4R6N A;  1OUW A;  3VZG A;  4AK4 A;  5J4X A;  5JM1 A;  1XXR A;  4ARX A;  2JZ4 A;  2HYR A;  3EB7 A;  4QX0 A;  5J50 A;  2GTY A;  4R6O A;  1JOT A;  2BMZ A;  1J4U A;  1PXD A;  4PIU A;  1UH0 A;  3LL0 A;  3WOB A;  3LLY A;  4GX7 A;  1ZGR A;  2BN0 A;  4PIK A;  3LL2 A; 
#chains in the Genus database with same CATH homology
 1XEZ A;  4PIT A;  1VBP A;  5J4T A;  3LKY A;  1X1V A;  3MIU A;  2NUO A;  4MQ0 A;  2NU5 A;  4AKC A;  5J51 A;  1JAC A;  1J4S A;  4R6P A;  5EXG A;  2HYQ A;  1VBO A;  1TP8 A;  4AKB A;  1C3N A;  3WOC A;  1WS5 C;  3P8S A;  2GUE A;  1TOQ A;  1C3M A;  1KU8 A;  3AQG A;  3VY6 A;  1UH1 A;  3LL1 A;  1KUJ A;  2GUX A;  1ZGS A;  2GUD A;  3VY7 A;  3R52 A;  1WS5 A;  1C3K A;  5AV7 A;  2GUC A;  4R6Q A;  3R51 A;  1XXQ A;  3VZE A;  3MIT A;  3MIV A;  1UGW A;  4PIF A;  4DDN A;  1M26 A;  3APA A;  3O44 A;  1UGW C;  4R6R A;  5BN6 E;  2BMY A;  1UGX A;  1UGY A;  1J4T A;  1WS4 A;  3VZF A;  3LLZ A;  4WOG A;  3R50 A;  1UGY C;  4AKD A;  1WS4 C;  3LM1 A;  4R6N A;  1OUW A;  3VZG A;  4AK4 A;  5J4X A;  5JM1 A;  1XXR A;  2JZ4 A;  2HYR A;  5J50 A;  2GTY A;  4R6O A;  1JOT A;  2BMZ A;  1J4U A;  1PXD A;  4PIU A;  1UH0 A;  3LL0 A;  3WOB A;  3LLY A;  4GX7 A;  1ZGR A;  2BN0 A;  4PIK A;  3LL2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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