3S52 | Genus

Total Genus 52

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	52
sequence length	218
structure length	218
Chain Sequence	MYQHRDWQGALLDFPVNKVVCVGSNYAEHIKEMGSTASVEPVLFIKPETALCDIRQPVSIPKDFGSVHHEIELAVLIGTPLKQASEDRVARAIAGYGVALDLTLRELQAGFKKAGQPWEKAKAFDGSCPISGFIPVAEFGDAQQADLSLTINGEIRQQGNTRDMITPIIPLISYMSRFFTLRAGDIVLTGTPQGVGPMQSGDMLKIMLNGKTVNTRII

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

publication title	Crystal structure of a putative fumarylacetoacetate hydrolase family protein from Yersinia pestis CO92 rcsb
molecule keywords	Putative fumarylacetoacetate hydrolase family protein
molecule tags	Hydrolase
source organism	Yersinia pestis
total genus	52
structure length	218
sequence length	218
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2011-05-20

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01557	FAA_hydrolase	Fumarylacetoacetate (FAA) hydrolase family

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.90.850.10	Alpha Beta	Alpha-Beta Complex	Fumarylacetoacetate hydrolase; domain 2	Fumarylacetoacetase-like, C-terminal domain	3s52A00

3S52A 5D2GA 1QCNA 1NKQA 1SV6A 2Q1AX 2Q1DX 1I7OA 4PFZA 3V77A 5D2IA 2EB6A 2HZYA 5D2KA 4MAQA 1HYOA 3R6OA 1QQJA 1NR9A 3QDFA 1WZOA 3LZKA 3BQBA 2DFUA 3RR6A 2WQTA 5D2JA 4DBHA 2EB4A 2Q1CX 4DBFA 2EB5A 4QKUA 1GTTA 5D2HA 1SAWA 1QCOA 2Q19X 5D2FA 2Q18X
chains in the Genus database with same CATH superfamily

#chains in the Genus database with same CATH superfamily
 3S52 A;  5D2G A;  1QCN A;  1NKQ A;  1SV6 A;  2Q1A X;  2Q1D X;  1I7O A;  4PFZ A;  3V77 A;  5D2I A;  2EB6 A;  2HZY A;  5D2K A;  4MAQ A;  1HYO A;  3R6O A;  1QQJ A;  1NR9 A;  3QDF A;  1WZO A;  3LZK A;  3BQB A;  2DFU A;  3RR6 A;  2WQT A;  5D2J A;  4DBH A;  2EB4 A;  2Q1C X;  4DBF A;  2EB5 A;  4QKU A;  1GTT A;  5D2H A;  1SAW A;  1QCO A;  2Q19 X;  5D2F A;  2Q18 X; 
#chains in the Genus database with same CATH topology
 3S52 A;  5D2G A;  1QCN A;  1NKQ A;  1SV6 A;  2Q1A X;  2Q1D X;  1I7O A;  4PFZ A;  3V77 A;  5D2I A;  2EB6 A;  2HZY A;  5D2K A;  4MAQ A;  1HYO A;  3R6O A;  1QQJ A;  1NR9 A;  3QDF A;  1WZO A;  3LZK A;  3BQB A;  2DFU A;  3RR6 A;  2WQT A;  5D2J A;  4DBH A;  2EB4 A;  2Q1C X;  4DBF A;  2EB5 A;  4QKU A;  1GTT A;  5D2H A;  1SAW A;  1QCO A;  2Q19 X;  5D2F A;  2Q18 X; 
#chains in the Genus database with same CATH homology
 3S52 A;  5D2G A;  1QCN A;  1NKQ A;  1SV6 A;  2Q1A X;  2Q1D X;  1I7O A;  4PFZ A;  3V77 A;  5D2I A;  2EB6 A;  2HZY A;  5D2K A;  4MAQ A;  1HYO A;  3R6O A;  1QQJ A;  1NR9 A;  3QDF A;  1WZO A;  3LZK A;  3BQB A;  2DFU A;  3RR6 A;  2WQT A;  5D2J A;  4DBH A;  2EB4 A;  2Q1C X;  4DBF A;  2EB5 A;  4QKU A;  1GTT A;  5D2H A;  1SAW A;  1QCO A;  2Q19 X;  5D2F A;  2Q18 X;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3S52A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations