3SNY | Genus

Total Genus 19

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	19
sequence length	87
structure length	87
Chain Sequence	KAVTFYEDINYGGASVSLQPGNYTLSQLNTAKIPNDWMTSLKVPSGWTVDVYENDNFTGTKWTYTSDTPWVGNDANDKMRSVKIYST

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Metal binding protein
source organism	Clostridium beijerinckii
publication title	Decoding the molecular design principles underlying Ca(2+) binding to beta gamma-crystallin motifs pubmed doi rcsb
molecule keywords	Clostrillin
total genus	19
structure length	87
sequence length	87
ec nomenclature
pdb deposition date	2011-06-29

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.20.10	Mainly Beta	Sandwich	Gamma-B Crystallin; domain 1	Crystallins	3snyA00

3SO1A 2KP5A 3LWKA 2M3TA 3SNYA 5HT8A 1HK0X 1GAMA 2DADA 3ENUA 3HZ2A 1ZIEA 1E7NA 4JGFA 1ZWMA 4NI3A 1A7HA 3I9HA 1YHPA 4GCRA 1ZIQA 3IAJA 1OKIA 1HDFA 1AMMA 3QK3A 2K1WA 1M8UA 1YTQA 2V2UA 2JDFA 4W9AA 1PRRA 4PSRA 3HZBA 4W9BA 5HT9A 1ELPA 1HA4A 1A5DA 1A45A 2JDGA 3SNZA 3SO0A 2M3UA 1BD7A 2BV2A 1DSLA 1GCSA 4EL6A 4PSPA 4FD9A 1AG4A 1I5IA 2G98A 1ZIRA 1H4AX 2M3CA 3CW3A 1ZGTA 4GR7A 2B1OA 2BB2A 1PRSA 2KFBA 2K1XA 1BLBA 1NPSA 4IAUA 3ENTA 2A5MA 4AKAA 1ZWOA 2NBRA
chains in the Genus database with same CATH superfamily

2M3TA 3SNYA 1GAMA 3ENUA 3HZ2A 3I9HA 3QK3A 1PRRA 3HZBA 1ELPA 1HA4A 2JDGA 3SNZA 3UJZA 1AG4A 2BB2A 1PRSA 1NPSA 2A5MA 2KP5A 2DADA 4JGFA 1ZWMA 1YHPA 3IAJA 1OKIA 1HDFA 1YTQA 4W9AA 4W9BA 1A5DA 1A45A 2M3UA 1GCSA 4EL6A 4GR7A 4IAUA 1F53A 2NBRA 3SO1A 3LWKA 5HT8A 1E7NA 4NI3A 4GCRA 1M8UA 2V2UA 2JDFA 5HT9A 4PSRA 4PSPA 4FD9A 2G98A 2M3CA 1ZGTA 1C01A 2B1OA 1G6EA 2KFBA 1BHUA 4AKAA 1HK0X 1WKTA 1ZIEA 1A7HA 1ZIQA 1AMMA 2K1WA 3SO0A 1BD7A 2BV2A 1DSLA 1I5IA 1ZIRA 1H4AX 3CW3A 1GH5A 2K1XA 1BLBA 3ENTA 1ZWOA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3SO1 A;  2KP5 A;  3LWK A;  2M3T A;  3SNY A;  5HT8 A;  1HK0 X;  1GAM A;  2DAD A;  3ENU A;  3HZ2 A;  1ZIE A;  1E7N A;  4JGF A;  1ZWM A;  4NI3 A;  1A7H A;  3I9H A;  1YHP A;  4GCR A;  1ZIQ A;  3IAJ A;  1OKI A;  1HDF A;  1AMM A;  3QK3 A;  2K1W A;  1M8U A;  1YTQ A;  2V2U A;  2JDF A;  4W9A A;  1PRR A;  4PSR A;  3HZB A;  4W9B A;  5HT9 A;  1ELP A;  1HA4 A;  1A5D A;  1A45 A;  2JDG A;  3SNZ A;  3SO0 A;  2M3U A;  1BD7 A;  2BV2 A;  1DSL A;  1GCS A;  4EL6 A;  4PSP A;  4FD9 A;  1AG4 A;  1I5I A;  2G98 A;  1ZIR A;  1H4A X;  2M3C A;  3CW3 A;  1ZGT A;  4GR7 A;  2B1O A;  2BB2 A;  1PRS A;  2KFB A;  2K1X A;  1BLB A;  1NPS A;  4IAU A;  3ENT A;  2A5M A;  4AKA A;  1ZWO A;  2NBR A; 
#chains in the Genus database with same CATH topology
 2M3T A;  3SNY A;  1GAM A;  3ENU A;  3HZ2 A;  3I9H A;  3QK3 A;  1PRR A;  3HZB A;  1ELP A;  1HA4 A;  2JDG A;  3SNZ A;  3UJZ A;  1AG4 A;  2BB2 A;  1PRS A;  1NPS A;  2A5M A;  2KP5 A;  2DAD A;  4JGF A;  1ZWM A;  1YHP A;  3IAJ A;  1OKI A;  1HDF A;  1YTQ A;  4W9A A;  4W9B A;  1A5D A;  1A45 A;  2M3U A;  1GCS A;  4EL6 A;  4GR7 A;  4IAU A;  1F53 A;  2NBR A;  3SO1 A;  3LWK A;  5HT8 A;  1E7N A;  4NI3 A;  4GCR A;  1M8U A;  2V2U A;  2JDF A;  5HT9 A;  4PSR A;  4PSP A;  4FD9 A;  2G98 A;  2M3C A;  1ZGT A;  1C01 A;  2B1O A;  1G6E A;  2KFB A;  1BHU A;  4AKA A;  1HK0 X;  1WKT A;  1ZIE A;  1A7H A;  1ZIQ A;  1AMM A;  2K1W A;  3SO0 A;  1BD7 A;  2BV2 A;  1DSL A;  1I5I A;  1ZIR A;  1H4A X;  3CW3 A;  1GH5 A;  2K1X A;  1BLB A;  3ENT A;  1ZWO A; 
#chains in the Genus database with same CATH homology
 3SO1 A;  2KP5 A;  3LWK A;  2M3T A;  3SNY A;  5HT8 A;  1HK0 X;  1GAM A;  2DAD A;  3ENU A;  3HZ2 A;  1ZIE A;  1E7N A;  4JGF A;  1ZWM A;  4NI3 A;  1A7H A;  3I9H A;  1YHP A;  4GCR A;  1ZIQ A;  3IAJ A;  1OKI A;  1HDF A;  1AMM A;  3QK3 A;  2K1W A;  1M8U A;  1YTQ A;  2V2U A;  2JDF A;  4W9A A;  1PRR A;  4PSR A;  3HZB A;  4W9B A;  5HT9 A;  1ELP A;  1HA4 A;  1A5D A;  1A45 A;  2JDG A;  3SNZ A;  3SO0 A;  2M3U A;  1BD7 A;  2BV2 A;  1DSL A;  1GCS A;  4EL6 A;  4PSP A;  4FD9 A;  1AG4 A;  1I5I A;  2G98 A;  1ZIR A;  1H4A X;  2M3C A;  3CW3 A;  1ZGT A;  4GR7 A;  2B1O A;  2BB2 A;  1PRS A;  2KFB A;  2K1X A;  1BLB A;  1NPS A;  4IAU A;  3ENT A;  2A5M A;  4AKA A;  1ZWO A;  2NBR A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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3SNYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN