3SO1A

Crystal structure of a double mutant t41s t82s of a betagamma-crystallin domain from clostridium beijerinckii
Total Genus 20

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
87
structure length
87
Chain Sequence
KAVTFYEDINYGGASVSLQPGNYTLSQLNTAKIPNDWMSSLKVPSGWTVDVYENDNFTGTKWTYTSDTPWVGNDANDKMSSVKIYST

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (5-10)S4 (42-44)EMPTYTIV1 (10-13)S2 (14-20)S3 (23-25)S7 (83-87)S5 (50-56)AH1 (27-33)TIV7 (77-80)TIV3 (36-39)TVIII1 (70-73)TII1 (46-49)S6 (60-66)TIV4 (56-59)TIV6 (74-77)TI1 (75-78)Updating...
connected with : NaN
molecule tags Metal binding protein
source organism Clostridium beijerinckii
publication title Decoding the molecular design principles underlying Ca(2+) binding to beta gamma-crystallin motifs
pubmed doi rcsb
molecule keywords Clostrillin
total genus 20
structure length 87
sequence length 87
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature
pdb deposition date 2011-06-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 3so1A00
2JDGA 3SO1A 1HDFA 1I5IA 1A7HA 2M3TA 4W9BA 1H4AX 1GCSA 1YHPA 4EL6A 2G98A 3QK3A 4GCRA 3SO0A 4JGFA 1A45A 1BLBA 1M8UA 2B1OA 1ZIEA 2BV2A 4PSRA 4FD9A 2K1XA 5HT9A 1ZWOA 3ENTA 3LWKA 3SNZA 1ZIRA 2K1WA 2KP5A 1ZWMA 3HZBA 1ZIQA 1NPSA 1GAMA 3I9HA 3SNYA 5HT8A 4AKAA 2M3CA 4GR7A 4IAUA 1PRRA 4W9AA 1PRSA 1AG4A 1DSLA 1OKIA 2A5MA 1ELPA 2NBRA 2KFBA 2V2UA 3ENUA 1E7NA 1HA4A 1ZGTA 2BB2A 2DADA 3IAJA 1HK0X 4PSPA 2M3UA 3HZ2A 1YTQA 2JDFA 4NI3A 3CW3A 1BD7A 1AMMA 1A5DA
chains in the Genus database with same CATH superfamily
3SO1A 1GCSA 4EL6A 1GH5A 4PSRA 3LWKA 1G6EA 3HZBA 1AG4A 2A5MA 1ELPA 2KFBA 2DADA 1ZGTA 3IAJA 1HK0X 1BD7A 1I5IA 1A7HA 1YHPA 1C01A 3SNZA 1ZIRA 2KP5A 1ZIQA 4AKAA 1BHUA 4W9AA 3UJZA 1HA4A 2BB2A 2M3UA 2V2UA 2JDGA 1H4AX 2G98A 3QK3A 4GCRA 1A45A 1BLBA 1M8UA 1ZIEA 2K1XA 1ZWOA 3ENTA 3SNYA 5HT8A 2M3CA 4IAUA 1PRSA 1OKIA 2NBRA 1E7NA 4PSPA 1YTQA 2JDFA 1HDFA 2M3TA 4W9BA 3SO0A 4JGFA 2B1OA 2BV2A 4FD9A 5HT9A 2K1WA 3I9HA 1ZWMA 1NPSA 1GAMA 4GR7A 1DSLA 3ENUA 1F53A 3HZ2A 4NI3A 3CW3A 1PRRA 1AMMA 1WKTA 1A5DA
chains in the Genus database with same CATH topology
2JDGA 3SO1A 1HDFA 1I5IA 1A7HA 2M3TA 4W9BA 1H4AX 1GCSA 1YHPA 4EL6A 2G98A 3QK3A 4GCRA 3SO0A 4JGFA 1A45A 1BLBA 1M8UA 2B1OA 1ZIEA 2BV2A 4PSRA 4FD9A 2K1XA 5HT9A 1ZWOA 3ENTA 3LWKA 3SNZA 1ZIRA 2K1WA 2KP5A 1ZWMA 3HZBA 1ZIQA 1NPSA 1GAMA 3I9HA 3SNYA 5HT8A 4AKAA 2M3CA 4GR7A 4IAUA 1PRRA 4W9AA 1PRSA 1AG4A 1DSLA 1OKIA 2A5MA 1ELPA 2NBRA 2KFBA 2V2UA 3ENUA 1E7NA 1HA4A 1ZGTA 2BB2A 2DADA 3IAJA 1HK0X 4PSPA 2M3UA 3HZ2A 1YTQA 2JDFA 4NI3A 3CW3A 1BD7A 1AMMA 1A5DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2JDG A;  3SO1 A;  1HDF A;  1I5I A;  1A7H A;  2M3T A;  4W9B A;  1H4A X;  1GCS A;  1YHP A;  4EL6 A;  2G98 A;  3QK3 A;  4GCR A;  3SO0 A;  4JGF A;  1A45 A;  1BLB A;  1M8U A;  2B1O A;  1ZIE A;  2BV2 A;  4PSR A;  4FD9 A;  2K1X A;  5HT9 A;  1ZWO A;  3ENT A;  3LWK A;  3SNZ A;  1ZIR A;  2K1W A;  2KP5 A;  1ZWM A;  3HZB A;  1ZIQ A;  1NPS A;  1GAM A;  3I9H A;  3SNY A;  5HT8 A;  4AKA A;  2M3C A;  4GR7 A;  4IAU A;  1PRR A;  4W9A A;  1PRS A;  1AG4 A;  1DSL A;  1OKI A;  2A5M A;  1ELP A;  2NBR A;  2KFB A;  2V2U A;  3ENU A;  1E7N A;  1HA4 A;  1ZGT A;  2BB2 A;  2DAD A;  3IAJ A;  1HK0 X;  4PSP A;  2M3U A;  3HZ2 A;  1YTQ A;  2JDF A;  4NI3 A;  3CW3 A;  1BD7 A;  1AMM A;  1A5D A; 
#chains in the Genus database with same CATH topology
 3SO1 A;  1GCS A;  4EL6 A;  1GH5 A;  4PSR A;  3LWK A;  1G6E A;  3HZB A;  1AG4 A;  2A5M A;  1ELP A;  2KFB A;  2DAD A;  1ZGT A;  3IAJ A;  1HK0 X;  1BD7 A;  1I5I A;  1A7H A;  1YHP A;  1C01 A;  3SNZ A;  1ZIR A;  2KP5 A;  1ZIQ A;  4AKA A;  1BHU A;  4W9A A;  3UJZ A;  1HA4 A;  2BB2 A;  2M3U A;  2V2U A;  2JDG A;  1H4A X;  2G98 A;  3QK3 A;  4GCR A;  1A45 A;  1BLB A;  1M8U A;  1ZIE A;  2K1X A;  1ZWO A;  3ENT A;  3SNY A;  5HT8 A;  2M3C A;  4IAU A;  1PRS A;  1OKI A;  2NBR A;  1E7N A;  4PSP A;  1YTQ A;  2JDF A;  1HDF A;  2M3T A;  4W9B A;  3SO0 A;  4JGF A;  2B1O A;  2BV2 A;  4FD9 A;  5HT9 A;  2K1W A;  3I9H A;  1ZWM A;  1NPS A;  1GAM A;  4GR7 A;  1DSL A;  3ENU A;  1F53 A;  3HZ2 A;  4NI3 A;  3CW3 A;  1PRR A;  1AMM A;  1WKT A;  1A5D A; 
#chains in the Genus database with same CATH homology
 2JDG A;  3SO1 A;  1HDF A;  1I5I A;  1A7H A;  2M3T A;  4W9B A;  1H4A X;  1GCS A;  1YHP A;  4EL6 A;  2G98 A;  3QK3 A;  4GCR A;  3SO0 A;  4JGF A;  1A45 A;  1BLB A;  1M8U A;  2B1O A;  1ZIE A;  2BV2 A;  4PSR A;  4FD9 A;  2K1X A;  5HT9 A;  1ZWO A;  3ENT A;  3LWK A;  3SNZ A;  1ZIR A;  2K1W A;  2KP5 A;  1ZWM A;  3HZB A;  1ZIQ A;  1NPS A;  1GAM A;  3I9H A;  3SNY A;  5HT8 A;  4AKA A;  2M3C A;  4GR7 A;  4IAU A;  1PRR A;  4W9A A;  1PRS A;  1AG4 A;  1DSL A;  1OKI A;  2A5M A;  1ELP A;  2NBR A;  2KFB A;  2V2U A;  3ENU A;  1E7N A;  1HA4 A;  1ZGT A;  2BB2 A;  2DAD A;  3IAJ A;  1HK0 X;  4PSP A;  2M3U A;  3HZ2 A;  1YTQ A;  2JDF A;  4NI3 A;  3CW3 A;  1BD7 A;  1AMM A;  1A5D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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