3TBOA

Crystal structure of a type 3 cdgsh iron-sulfur protein.
Total Genus 12

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
57
structure length
54
Chain Sequence
VEIRAIENGPYEVKIAIYLCRCGHSGSKPHCDGTHAKVGFKAPGAKIVHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
Chord Diagram
EMPTYS4 (50-54)S1 (4-7)TIV1 (15-21)AH1 (39-43)TII1 (8-11)S2 (13-16)TIV4 (30-33)S3 (22-24)TIV3 (25-28)TIV5 (33-36)TVIa1 (32-35)Updating...
connected with : NaN
publication title Structure and Molecular Evolution of CDGSH Iron-Sulfur Domains.
pubmed doi rcsb
molecule keywords Zinc finger, CDGSH-type domain protein
molecule tags Metal binding protein
source organism Pyrobaculum calidifontis
total genus 12
structure length 54
sequence length 57
ec nomenclature
pdb deposition date 2011-08-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09360 zf-CDGSH Iron-binding zinc finger CDGSH type
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.5.90 Alpha Beta 3-Layer(aba) Sandwich Ribosomal Protein L9; domain 1 Ribosomal Protein L9; domain 1 3tboA00
2QD0A 3S2QA 4F28A 3TBNA 2QH7A 3FNVA 3EW0A 3S2RA 4OO7A 4EZFA 3REEA 3LPQA 4F2CA 3TBOA 4F1EA 2R13A 4OOAA
chains in the Genus database with same CATH superfamily
5EG5A 2Q9QA 3S2RA 3LPQA 4FSDA 3CO4A 2HBAA 1DIVA 4F2CA 4KW7A 3TBNA 4UY8H 2QH7A 3EW0A 1CQUA 4FS8A 2HJQA 2X4AA 4F1EA 3ANWA 4F28A 4RSRA 3FNVA 2HVFA 5GHRB 2EHOC 2HBBA 4OO7A 4EZFA 3REEA 3J7ZH 3TBOA 2X49A 2E9XD 2E9XB 2R13A 2QD0A 4OOAA 3S2QA 3FNDA 2Q9QB 4FR0A 2LSMA 5GHSC 2OUTA
chains in the Genus database with same CATH topology
5EG5A 2Q9QA 3S2RA 3LPQA 4FSDA 4F2CA 4KW7A 3TBNA 2QH7A 3EW0A 4FS8A 4F1EA 2X4AA 3ANWA 4F28A 4RSRA 3FNVA 5GHRB 2EHOC 4OO7A 4EZFA 3REEA 3TBOA 2X49A 2E9XD 2E9XB 2R13A 2QD0A 4OOAA 3S2QA 2Q9QB 4FR0A 2LSMA 5GHSC 2OUTA
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 2QD0 A;  3S2Q A;  4F28 A;  3TBN A;  2QH7 A;  3FNV A;  3EW0 A;  3S2R A;  4OO7 A;  4EZF A;  3REE A;  3LPQ A;  4F2C A;  3TBO A;  4F1E A;  2R13 A;  4OOA A; 
#chains in the Genus database with same CATH topology
 5EG5 A;  2Q9Q A;  3S2R A;  3LPQ A;  4FSD A;  3CO4 A;  2HBA A;  1DIV A;  4F2C A;  4KW7 A;  3TBN A;  4UY8 H;  2QH7 A;  3EW0 A;  1CQU A;  4FS8 A;  2HJQ A;  2X4A A;  4F1E A;  3ANW A;  4F28 A;  4RSR A;  3FNV A;  2HVF A;  5GHR B;  2EHO C;  2HBB A;  4OO7 A;  4EZF A;  3REE A;  3J7Z H;  3TBO A;  2X49 A;  2E9X D;  2E9X B;  2R13 A;  2QD0 A;  4OOA A;  3S2Q A;  3FND A;  2Q9Q B;  4FR0 A;  2LSM A;  5GHS C;  2OUT A; 
#chains in the Genus database with same CATH homology
 5EG5 A;  2Q9Q A;  3S2R A;  3LPQ A;  4FSD A;  4F2C A;  4KW7 A;  3TBN A;  2QH7 A;  3EW0 A;  4FS8 A;  4F1E A;  2X4A A;  3ANW A;  4F28 A;  4RSR A;  3FNV A;  5GHR B;  2EHO C;  4OO7 A;  4EZF A;  3REE A;  3TBO A;  2X49 A;  2E9X D;  2E9X B;  2R13 A;  2QD0 A;  4OOA A;  3S2Q A;  2Q9Q B;  4FR0 A;  2LSM A;  5GHS C;  2OUT A;
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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