3TOWA

Crystal structure of the mabp domain of mvb12b of human escrt-i complex
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
152
structure length
152
Chain Sequence
MDPITGVGVVASRNRAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIKDTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIGELNSMGIWYRMGHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural basis for membrane targeting by the MVB12-associated beta-prism domain of the human ESCRT-I MVB12 subunit.
pubmed doi rcsb
molecule tags Protein transport
source organism Homo sapiens
molecule keywords Multivesicular body subunit 12B
total genus 27
structure length 152
sequence length 152
ec nomenclature
pdb deposition date 2011-09-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.50 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Vitelline Membrane Outer Layer Protein I, subunit A 3towA00
2QP2A 3TOWA
chains in the Genus database with same CATH superfamily
1WS5A 4AK4A 1J4UA 5J4TA 1UGWC 3O44A 4ARXA 1UGYA 1CIYA 5J51A 3R50A 1J4TA 4GX7A 3LLZA 1I5PA 1C3MA 4QX2A 4QX0A 4QX1A 4PIFA 2BMYA 4R6PA 2BN0A 3P8SA 1XEZA 2GUXA 1UGXA 1TP8A 3AQGA 5JM1A 1OUWA 1M26A 3LL0A 3MITA 4WOGA 1KUJA 2HYQA 2GUCA 1WS4A 1UH0A 4DDNA 1VBOA 3LL2A 1C3KA 2GUEA 4PIKA 1UGWA 2GUDA 1UH1A 2GTYA 4PIUA 4R6NA 4AKDA 2HYRA 1VMOA 3MIUA 3WOCA 2BMZA 3VY7A 4R6OA 1J4SA 1ZGRA 4MQ0A 1XXRA 2JZ4A 3EB7A 4QX3A 3VY6A 1C3NA 1WS5C 1KU8A 3WOBA 1ZGSA 1PXDA 4R6QA 5BN6E 1JI6A 1XXQA 5AV7A 1WS4C 1UGYC 3MIVA 3VZGA 4W8JA 3R52A 1JACA 3APAA 5EXGA 4D8MA 3R51A 3LM1A 4PITA 2NU5A 4AKBA 2QP2A 3TOWA 4R6RA 5J4XA 2C9KA 3LKYA 1TOQA 4ARYA 5J50A 3LL1A 4MOAA 3LLYA 1W99A 1DLCA 1JOTA 1X1VA 3VZEA 3VZFA 2NUOA 4AKCA 1VBPA
chains in the Genus database with same CATH topology
2QP2A 3TOWA 4D8MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QP2 A;  3TOW A; 
#chains in the Genus database with same CATH topology
 1WS5 A;  4AK4 A;  1J4U A;  5J4T A;  1UGW C;  3O44 A;  4ARX A;  1UGY A;  1CIY A;  5J51 A;  3R50 A;  1J4T A;  4GX7 A;  3LLZ A;  1I5P A;  1C3M A;  4QX2 A;  4QX0 A;  4QX1 A;  4PIF A;  2BMY A;  4R6P A;  2BN0 A;  3P8S A;  1XEZ A;  2GUX A;  1UGX A;  1TP8 A;  3AQG A;  5JM1 A;  1OUW A;  1M26 A;  3LL0 A;  3MIT A;  4WOG A;  1KUJ A;  2HYQ A;  2GUC A;  1WS4 A;  1UH0 A;  4DDN A;  1VBO A;  3LL2 A;  1C3K A;  2GUE A;  4PIK A;  1UGW A;  2GUD A;  1UH1 A;  2GTY A;  4PIU A;  4R6N A;  4AKD A;  2HYR A;  1VMO A;  3MIU A;  3WOC A;  2BMZ A;  3VY7 A;  4R6O A;  1J4S A;  1ZGR A;  4MQ0 A;  1XXR A;  2JZ4 A;  3EB7 A;  4QX3 A;  3VY6 A;  1C3N A;  1WS5 C;  1KU8 A;  3WOB A;  1ZGS A;  1PXD A;  4R6Q A;  5BN6 E;  1JI6 A;  1XXQ A;  5AV7 A;  1WS4 C;  1UGY C;  3MIV A;  3VZG A;  4W8J A;  3R52 A;  1JAC A;  3APA A;  5EXG A;  4D8M A;  3R51 A;  3LM1 A;  4PIT A;  2NU5 A;  4AKB A;  2QP2 A;  3TOW A;  4R6R A;  5J4X A;  2C9K A;  3LKY A;  1TOQ A;  4ARY A;  5J50 A;  3LL1 A;  4MOA A;  3LLY A;  1W99 A;  1DLC A;  1JOT A;  1X1V A;  3VZE A;  3VZF A;  2NUO A;  4AKC A;  1VBP A; 
#chains in the Genus database with same CATH homology
 2QP2 A;  3TOW A;  4D8M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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