3UJZ | Genus

Total Genus 153

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	153
sequence length	860
structure length	604
Chain Sequence	NSAIYFNTSQPINDLQGSLAAEVKFAQSQILPAHPKEGDSQPHLTSLRKSLLLVRPVKADDKTPVQVEARDDNNKILGTLTLYPPSSLPDTIYHLDGVPLENNRITYAQHIWSAELPAHWIVPGLNLVIKQGNLSGRLNDIKIGAPGELLLHTIDIGMLTTPRDRFDFAADAAAHREYFQTIPVSRMIVNNYAPLHLKEVMLPTGELLTDMDPGNGGWHSGTMRQRIGKELVSHGIDNANYGLNSTAGLGENSHPYVVAQLAAHNSRGNYANGIQVHGGSGGGGIVTLDSTLGNEFSHDVGHNYGLGHYVDGFKGSVHRSAENNNSTWGWDGDKKRFIPNFYPSQTNEKSCLNNQCQEPFDGHKFGFDAMAGGSPFSAANRFTMYTPNSSAIIQRFFENKAVFDSRSSTGFSKWNADTQEMEPYEHTIEARKPEQFGVPVTTLVGYYDPEGTLSSYIYPAMYGAYGFTYSMNKFHINVPTESQPLDTKSLTPAPEGLTYTVNGQALPAKENEGCIVSVNSGKRYCLPVGQRSGYSLPDWIVGQEVYVDSGAKAKVLLSDWDNLSYNRIGEFVGNVNPADMKKVKAWNGQYLDFSKPRSMRVVYK

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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reading 604 atoms

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Hydrolase
source organism	Escherichia coli
publication title	Structural Insight into the Bacterial Mucinase StcE Essential to Adhesion and Immune Evasion during Enterohemorrhagic E. coli Infection. pubmed doi rcsb
molecule keywords	Metalloprotease stcE
total genus	153
structure length	604
sequence length	860
ec nomenclature	ec 3.4.24.-:
pdb deposition date	2011-11-08

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF10462	Peptidase_M66	Peptidase M66
A	PF12561	TagA	ToxR activated gene A lipoprotein domain
A	PF17945	Crystall_4	Beta/Gamma crystallin

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.60.20.40	Mainly Beta	Sandwich	Gamma-B Crystallin; domain 1	Gamma-B Crystallin; domain 1	3ujzA03

3UJZA
chains in the Genus database with same CATH superfamily

1YTQA 1E7NA 4JGFA 1AG4A 3SNZA 3HZ2A 1BLBA 2M3UA 1HA4A 1YHPA 1A5DA 2KFBA 2BV2A 4PSPA 1BHUA 2NBRA 1F53A 3I9HA 1ELPA 1ZGTA 1GH5A 2K1WA 1G6EA 1BD7A 3UJZA 1HK0X 1AMMA 2A5MA 1ZIRA 2JDFA 3ENTA 2DADA 4GCRA 1ZIEA 1PRRA 4PSRA 4NI3A 1H4AX 1GCSA 1A45A 3SO0A 2M3TA 1NPSA 1ZWMA 2M3CA 3LWKA 4EL6A 4FD9A 2V2UA 2BB2A 1GAMA 2KP5A 1A7HA 1I5IA 4IAUA 1ZWOA 4GR7A 3HZBA 5HT8A 2G98A 1M8UA 3IAJA 1HDFA 3SO1A 3ENUA 2K1XA 1DSLA 4W9BA 1WKTA 3SNYA 4W9AA 1OKIA 2JDGA 3CW3A 1PRSA 3QK3A 1ZIQA 4AKAA 5HT9A 2B1OA 1C01A
chains in the Genus database with same CATH topology

1F53A 1GH5A 1WKTA 3UJZA 1BHUA 1G6EA 1C01A
chains in the Genus database with same CATH homology

#chains in the Genus database with same CATH superfamily
 3UJZ A; 
#chains in the Genus database with same CATH topology
 1YTQ A;  1E7N A;  4JGF A;  1AG4 A;  3SNZ A;  3HZ2 A;  1BLB A;  2M3U A;  1HA4 A;  1YHP A;  1A5D A;  2KFB A;  2BV2 A;  4PSP A;  1BHU A;  2NBR A;  1F53 A;  3I9H A;  1ELP A;  1ZGT A;  1GH5 A;  2K1W A;  1G6E A;  1BD7 A;  3UJZ A;  1HK0 X;  1AMM A;  2A5M A;  1ZIR A;  2JDF A;  3ENT A;  2DAD A;  4GCR A;  1ZIE A;  1PRR A;  4PSR A;  4NI3 A;  1H4A X;  1GCS A;  1A45 A;  3SO0 A;  2M3T A;  1NPS A;  1ZWM A;  2M3C A;  3LWK A;  4EL6 A;  4FD9 A;  2V2U A;  2BB2 A;  1GAM A;  2KP5 A;  1A7H A;  1I5I A;  4IAU A;  1ZWO A;  4GR7 A;  3HZB A;  5HT8 A;  2G98 A;  1M8U A;  3IAJ A;  1HDF A;  3SO1 A;  3ENU A;  2K1X A;  1DSL A;  4W9B A;  1WKT A;  3SNY A;  4W9A A;  1OKI A;  2JDG A;  3CW3 A;  1PRS A;  3QK3 A;  1ZIQ A;  4AKA A;  5HT9 A;  2B1O A;  1C01 A; 
#chains in the Genus database with same CATH homology
 1F53 A;  1GH5 A;  1WKT A;  3UJZ A;  1BHU A;  1G6E A;  1C01 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3UJZA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations