3VY6A

Crystal structure of human pancreatic secretory protein zg16p with laminaribiose
Total Genus 28

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
138
structure length
138
Chain Sequence
RSSSYSGEYGSGGGKRFSHSGNQLDGPITALRVRVNTYYIVGLQVRYGKVWSDYVGGRNGDLEEIFLHPGESVIQVSGKYKWYLKKLVFVTDKGRYLSFGKDSGTSFNAVPLHPNTVLRFISGRSGSLIDAIGLHWDV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS11 (126-130)3H1 (44-46)TI3 (57-60)S2 (36-39)S7 (82-87)O1 (79-81)TI1 (40-43)S3 (49-56)S4 (61-68)S8 (94-101)S5 (71-72)S6 (76-77)S9 (105-112)TIV2 (101-104)TI4 (112-115)S10 (117-121)S12 (138-146)O2 (122-124)TII2 (134-137)S1 (25-31)TII1 (89-92)Updating...
connected with : NaN
molecule tags Sugar binding protein
source organism Homo sapiens
publication title Structural Basis for Multiple Sugar Recognition of Jacalin-related Human ZG16p Lectin
pubmed doi rcsb
molecule keywords Zymogen granule membrane protein 16
total genus 28
structure length 138
sequence length 138
ec nomenclature
pdb deposition date 2012-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3vy6A00
3MIUA 4MQ0A 2BN0A 1WS5C 1J4SA 4AK4A 3WOBA 1UGXA 3LLYA 1ZGRA 3VY6A 4PITA 3O44A 2GUDA 2JZ4A 3VY7A 3LKYA 2GUCA 3AQGA 1ZGSA 1C3NA 4R6RA 1KUJA 5J51A 4PIUA 2GUEA 4R6PA 3MITA 3LM1A 1UGWA 1UGYC 4AKBA 4R6NA 4DDNA 1UH1A 1C3MA 1VBOA 4AKCA 1WS4C 4WOGA 3APAA 3P8SA 1WS5A 3VZEA 3VZFA 4GX7A 3R52A 1TP8A 1XEZA 1OUWA 2NUOA 4PIFA 3LL2A 4R6QA 2GTYA 2BMYA 2BMZA 5JM1A 1J4UA 3LLZA 3R51A 1UH0A 1J4TA 5AV7A 1JACA 1JOTA 3VZGA 1WS4A 1PXDA 3MIVA 3WOCA 5J4XA 5EXGA 1KU8A 3R50A 1X1VA 4R6OA 1XXQA 3LL1A 1TOQA 1UGWC 2HYRA 5BN6E 1VBPA 4AKDA 1UGYA 2HYQA 1XXRA 5J4TA 4PIKA 3LL0A 1M26A 5J50A 2GUXA 2NU5A 1C3KA
chains in the Genus database with same CATH superfamily
3MIUA 4QX3A 4QX1A 4MQ0A 2BN0A 1WS5C 4W8JA 1J4SA 4AK4A 3WOBA 1UGXA 3LLYA 1ZGRA 3VY6A 4PITA 2QP2A 3O44A 2GUDA 2JZ4A 3VY7A 1I5PA 3LKYA 2GUCA 3AQGA 1ZGSA 1C3NA 4QX2A 4R6RA 4D8MA 1KUJA 5J51A 4ARYA 4PIUA 1VMOA 2GUEA 4R6PA 3MITA 3LM1A 1UGWA 2C9KA 1UGYC 4AKBA 4R6NA 4DDNA 1UH1A 1C3MA 1VBOA 1CIYA 4AKCA 1WS4C 4WOGA 1JI6A 3APAA 3P8SA 1WS5A 3VZEA 3VZFA 4GX7A 3R52A 1TP8A 1XEZA 1OUWA 2NUOA 4PIFA 3LL2A 4R6QA 2GTYA 2BMYA 2BMZA 5JM1A 1J4UA 3LLZA 3R51A 1UH0A 1J4TA 5AV7A 1JACA 4ARXA 1JOTA 3VZGA 1WS4A 3TOWA 1PXDA 3MIVA 1DLCA 3WOCA 1W99A 5J4XA 5EXGA 1KU8A 3R50A 1X1VA 4R6OA 1XXQA 3LL1A 3EB7A 1TOQA 1UGWC 2HYRA 5BN6E 1VBPA 4MOAA 4QX0A 4AKDA 1UGYA 2HYQA 1XXRA 5J4TA 4PIKA 3LL0A 1M26A 5J50A 2GUXA 2NU5A 1C3KA
chains in the Genus database with same CATH topology
3MIUA 4MQ0A 2BN0A 1WS5C 1J4SA 4AK4A 3WOBA 1UGXA 3LLYA 1ZGRA 3VY6A 4PITA 3O44A 2GUDA 2JZ4A 3VY7A 3LKYA 2GUCA 3AQGA 1ZGSA 1C3NA 4R6RA 1KUJA 5J51A 4PIUA 2GUEA 4R6PA 3MITA 3LM1A 1UGWA 1UGYC 4AKBA 4R6NA 4DDNA 1UH1A 1C3MA 1VBOA 4AKCA 1WS4C 4WOGA 3APAA 3P8SA 1WS5A 3VZEA 3VZFA 4GX7A 3R52A 1TP8A 1XEZA 1OUWA 2NUOA 4PIFA 3LL2A 4R6QA 2GTYA 2BMYA 2BMZA 5JM1A 1J4UA 3LLZA 3R51A 1UH0A 1J4TA 5AV7A 1JACA 1JOTA 3VZGA 1WS4A 1PXDA 3MIVA 3WOCA 5J4XA 5EXGA 1KU8A 3R50A 1X1VA 4R6OA 1XXQA 3LL1A 1TOQA 1UGWC 2HYRA 5BN6E 1VBPA 4AKDA 1UGYA 2HYQA 1XXRA 5J4TA 4PIKA 3LL0A 1M26A 5J50A 2GUXA 2NU5A 1C3KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MIU A;  4MQ0 A;  2BN0 A;  1WS5 C;  1J4S A;  4AK4 A;  3WOB A;  1UGX A;  3LLY A;  1ZGR A;  3VY6 A;  4PIT A;  3O44 A;  2GUD A;  2JZ4 A;  3VY7 A;  3LKY A;  2GUC A;  3AQG A;  1ZGS A;  1C3N A;  4R6R A;  1KUJ A;  5J51 A;  4PIU A;  2GUE A;  4R6P A;  3MIT A;  3LM1 A;  1UGW A;  1UGY C;  4AKB A;  4R6N A;  4DDN A;  1UH1 A;  1C3M A;  1VBO A;  4AKC A;  1WS4 C;  4WOG A;  3APA A;  3P8S A;  1WS5 A;  3VZE A;  3VZF A;  4GX7 A;  3R52 A;  1TP8 A;  1XEZ A;  1OUW A;  2NUO A;  4PIF A;  3LL2 A;  4R6Q A;  2GTY A;  2BMY A;  2BMZ A;  5JM1 A;  1J4U A;  3LLZ A;  3R51 A;  1UH0 A;  1J4T A;  5AV7 A;  1JAC A;  1JOT A;  3VZG A;  1WS4 A;  1PXD A;  3MIV A;  3WOC A;  5J4X A;  5EXG A;  1KU8 A;  3R50 A;  1X1V A;  4R6O A;  1XXQ A;  3LL1 A;  1TOQ A;  1UGW C;  2HYR A;  5BN6 E;  1VBP A;  4AKD A;  1UGY A;  2HYQ A;  1XXR A;  5J4T A;  4PIK A;  3LL0 A;  1M26 A;  5J50 A;  2GUX A;  2NU5 A;  1C3K A; 
#chains in the Genus database with same CATH topology
 3MIU A;  4QX3 A;  4QX1 A;  4MQ0 A;  2BN0 A;  1WS5 C;  4W8J A;  1J4S A;  4AK4 A;  3WOB A;  1UGX A;  3LLY A;  1ZGR A;  3VY6 A;  4PIT A;  2QP2 A;  3O44 A;  2GUD A;  2JZ4 A;  3VY7 A;  1I5P A;  3LKY A;  2GUC A;  3AQG A;  1ZGS A;  1C3N A;  4QX2 A;  4R6R A;  4D8M A;  1KUJ A;  5J51 A;  4ARY A;  4PIU A;  1VMO A;  2GUE A;  4R6P A;  3MIT A;  3LM1 A;  1UGW A;  2C9K A;  1UGY C;  4AKB A;  4R6N A;  4DDN A;  1UH1 A;  1C3M A;  1VBO A;  1CIY A;  4AKC A;  1WS4 C;  4WOG A;  1JI6 A;  3APA A;  3P8S A;  1WS5 A;  3VZE A;  3VZF A;  4GX7 A;  3R52 A;  1TP8 A;  1XEZ A;  1OUW A;  2NUO A;  4PIF A;  3LL2 A;  4R6Q A;  2GTY A;  2BMY A;  2BMZ A;  5JM1 A;  1J4U A;  3LLZ A;  3R51 A;  1UH0 A;  1J4T A;  5AV7 A;  1JAC A;  4ARX A;  1JOT A;  3VZG A;  1WS4 A;  3TOW A;  1PXD A;  3MIV A;  1DLC A;  3WOC A;  1W99 A;  5J4X A;  5EXG A;  1KU8 A;  3R50 A;  1X1V A;  4R6O A;  1XXQ A;  3LL1 A;  3EB7 A;  1TOQ A;  1UGW C;  2HYR A;  5BN6 E;  1VBP A;  4MOA A;  4QX0 A;  4AKD A;  1UGY A;  2HYQ A;  1XXR A;  5J4T A;  4PIK A;  3LL0 A;  1M26 A;  5J50 A;  2GUX A;  2NU5 A;  1C3K A; 
#chains in the Genus database with same CATH homology
 3MIU A;  4MQ0 A;  2BN0 A;  1WS5 C;  1J4S A;  4AK4 A;  3WOB A;  1UGX A;  3LLY A;  1ZGR A;  3VY6 A;  4PIT A;  3O44 A;  2GUD A;  2JZ4 A;  3VY7 A;  3LKY A;  2GUC A;  3AQG A;  1ZGS A;  1C3N A;  4R6R A;  1KUJ A;  5J51 A;  4PIU A;  2GUE A;  4R6P A;  3MIT A;  3LM1 A;  1UGW A;  1UGY C;  4AKB A;  4R6N A;  4DDN A;  1UH1 A;  1C3M A;  1VBO A;  4AKC A;  1WS4 C;  4WOG A;  3APA A;  3P8S A;  1WS5 A;  3VZE A;  3VZF A;  4GX7 A;  3R52 A;  1TP8 A;  1XEZ A;  1OUW A;  2NUO A;  4PIF A;  3LL2 A;  4R6Q A;  2GTY A;  2BMY A;  2BMZ A;  5JM1 A;  1J4U A;  3LLZ A;  3R51 A;  1UH0 A;  1J4T A;  5AV7 A;  1JAC A;  1JOT A;  3VZG A;  1WS4 A;  1PXD A;  3MIV A;  3WOC A;  5J4X A;  5EXG A;  1KU8 A;  3R50 A;  1X1V A;  4R6O A;  1XXQ A;  3LL1 A;  1TOQ A;  1UGW C;  2HYR A;  5BN6 E;  1VBP A;  4AKD A;  1UGY A;  2HYQ A;  1XXR A;  5J4T A;  4PIK A;  3LL0 A;  1M26 A;  5J50 A;  2GUX A;  2NU5 A;  1C3K A; 
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