3VY7A

Crystal structure of human pancreatic secretory protein zg16p with o-(alpha-d-mannosyl)-l-serine
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
138
structure length
138
Chain Sequence
RSSSYSGEYGSGGGKRFSHSGNQLDGPITALRVRVNTYYIVGLQVRYGKVWSDYVGGRNGDLEEIFLHPGESVIQVSGKYKWYLKKLVFVTDKGRYLSFGKDSGTSFNAVPLHPNTVLRFISGRSGSLIDAIGLHWDV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis for Multiple Sugar Recognition of Jacalin-related Human ZG16p Lectin
pubmed doi rcsb
molecule tags Sugar binding protein
source organism Homo sapiens
molecule keywords Zymogen granule membrane protein 16
total genus 31
structure length 138
sequence length 138
ec nomenclature
pdb deposition date 2012-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3vy7A00
3MITA 1WS4C 1UGXA 3APAA 1UH1A 5J50A 4DDNA 4AKCA 5AV7A 1TOQA 4PITA 3R51A 2GUCA 4AKDA 3WOBA 3LLYA 4AKBA 1XXQA 4R6PA 1KU8A 3LL1A 4R6OA 3LL0A 4PIKA 1VBOA 3AQGA 1X1VA 1C3NA 1PXDA 3VY7A 1WS5C 3LL2A 1JACA 1UGWC 3R50A 4AK4A 4R6RA 1KUJA 5EXGA 1M26A 2NUOA 1C3MA 1XEZA 3WOCA 4WOGA 4PIUA 3VY6A 1WS4A 2JZ4A 2GUEA 4R6QA 1C3KA 3LM1A 3MIVA 5JM1A 1WS5A 3LKYA 1UGYC 2BMYA 1J4TA 3VZFA 1JOTA 1ZGRA 2NU5A 2HYQA 1UH0A 4GX7A 3P8SA 2BMZA 2GUDA 1UGYA 1ZGSA 2HYRA 5J4XA 1TP8A 4PIFA 5BN6E 4R6NA 5J51A 1UGWA 5J4TA 1VBPA 2BN0A 4MQ0A 3LLZA 3VZEA 1OUWA 1J4SA 3O44A 1XXRA 3R52A 1J4UA 2GUXA 3VZGA 3MIUA 2GTYA
chains in the Genus database with same CATH superfamily
3MITA 1WS4C 1UGXA 3APAA 1UH1A 4ARYA 5J50A 4DDNA 4AKCA 5AV7A 1TOQA 3EB7A 4PITA 3R51A 2GUCA 4AKDA 3WOBA 4ARXA 3LLYA 4AKBA 1XXQA 4R6PA 1KU8A 4QX3A 1W99A 3LL1A 4R6OA 3LL0A 4PIKA 1JI6A 1VBOA 3AQGA 4QX0A 1X1VA 1C3NA 4QX2A 1PXDA 3VY7A 1WS5C 3LL2A 1JACA 1UGWC 3R50A 4AK4A 4R6RA 1KUJA 5EXGA 1M26A 2NUOA 1C3MA 1XEZA 3WOCA 4WOGA 1CIYA 4PIUA 3VY6A 1WS4A 2JZ4A 2GUEA 4R6QA 1C3KA 3LM1A 3MIVA 5JM1A 1WS5A 3LKYA 1UGYC 2BMYA 1J4TA 3VZFA 4QX1A 1JOTA 1ZGRA 2NU5A 1I5PA 2HYQA 1UH0A 4GX7A 4D8MA 2QP2A 3P8SA 2BMZA 3TOWA 2GUDA 2C9KA 1UGYA 1ZGSA 1VMOA 2HYRA 1DLCA 5J4XA 1TP8A 4PIFA 5BN6E 4R6NA 5J51A 1UGWA 5J4TA 1VBPA 2BN0A 4MQ0A 3LLZA 4W8JA 3VZEA 1OUWA 1J4SA 3O44A 1XXRA 3R52A 1J4UA 2GUXA 3VZGA 3MIUA 4MOAA 2GTYA
chains in the Genus database with same CATH topology
3MITA 1WS4C 1UGXA 3APAA 1UH1A 5J50A 4DDNA 4AKCA 5AV7A 1TOQA 4PITA 3R51A 2GUCA 4AKDA 3WOBA 3LLYA 4AKBA 1XXQA 4R6PA 1KU8A 3LL1A 4R6OA 3LL0A 4PIKA 1VBOA 3AQGA 1X1VA 1C3NA 1PXDA 3VY7A 1WS5C 3LL2A 1JACA 1UGWC 3R50A 4AK4A 4R6RA 1KUJA 5EXGA 1M26A 2NUOA 1C3MA 1XEZA 3WOCA 4WOGA 4PIUA 3VY6A 1WS4A 2JZ4A 2GUEA 4R6QA 1C3KA 3LM1A 3MIVA 5JM1A 1WS5A 3LKYA 1UGYC 2BMYA 1J4TA 3VZFA 1JOTA 1ZGRA 2NU5A 2HYQA 1UH0A 4GX7A 3P8SA 2BMZA 2GUDA 1UGYA 1ZGSA 2HYRA 5J4XA 1TP8A 4PIFA 5BN6E 4R6NA 5J51A 1UGWA 5J4TA 1VBPA 2BN0A 4MQ0A 3LLZA 3VZEA 1OUWA 1J4SA 3O44A 1XXRA 3R52A 1J4UA 2GUXA 3VZGA 3MIUA 2GTYA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MIT A;  1WS4 C;  1UGX A;  3APA A;  1UH1 A;  5J50 A;  4DDN A;  4AKC A;  5AV7 A;  1TOQ A;  4PIT A;  3R51 A;  2GUC A;  4AKD A;  3WOB A;  3LLY A;  4AKB A;  1XXQ A;  4R6P A;  1KU8 A;  3LL1 A;  4R6O A;  3LL0 A;  4PIK A;  1VBO A;  3AQG A;  1X1V A;  1C3N A;  1PXD A;  3VY7 A;  1WS5 C;  3LL2 A;  1JAC A;  1UGW C;  3R50 A;  4AK4 A;  4R6R A;  1KUJ A;  5EXG A;  1M26 A;  2NUO A;  1C3M A;  1XEZ A;  3WOC A;  4WOG A;  4PIU A;  3VY6 A;  1WS4 A;  2JZ4 A;  2GUE A;  4R6Q A;  1C3K A;  3LM1 A;  3MIV A;  5JM1 A;  1WS5 A;  3LKY A;  1UGY C;  2BMY A;  1J4T A;  3VZF A;  1JOT A;  1ZGR A;  2NU5 A;  2HYQ A;  1UH0 A;  4GX7 A;  3P8S A;  2BMZ A;  2GUD A;  1UGY A;  1ZGS A;  2HYR A;  5J4X A;  1TP8 A;  4PIF A;  5BN6 E;  4R6N A;  5J51 A;  1UGW A;  5J4T A;  1VBP A;  2BN0 A;  4MQ0 A;  3LLZ A;  3VZE A;  1OUW A;  1J4S A;  3O44 A;  1XXR A;  3R52 A;  1J4U A;  2GUX A;  3VZG A;  3MIU A;  2GTY A; 
#chains in the Genus database with same CATH topology
 3MIT A;  1WS4 C;  1UGX A;  3APA A;  1UH1 A;  4ARY A;  5J50 A;  4DDN A;  4AKC A;  5AV7 A;  1TOQ A;  3EB7 A;  4PIT A;  3R51 A;  2GUC A;  4AKD A;  3WOB A;  4ARX A;  3LLY A;  4AKB A;  1XXQ A;  4R6P A;  1KU8 A;  4QX3 A;  1W99 A;  3LL1 A;  4R6O A;  3LL0 A;  4PIK A;  1JI6 A;  1VBO A;  3AQG A;  4QX0 A;  1X1V A;  1C3N A;  4QX2 A;  1PXD A;  3VY7 A;  1WS5 C;  3LL2 A;  1JAC A;  1UGW C;  3R50 A;  4AK4 A;  4R6R A;  1KUJ A;  5EXG A;  1M26 A;  2NUO A;  1C3M A;  1XEZ A;  3WOC A;  4WOG A;  1CIY A;  4PIU A;  3VY6 A;  1WS4 A;  2JZ4 A;  2GUE A;  4R6Q A;  1C3K A;  3LM1 A;  3MIV A;  5JM1 A;  1WS5 A;  3LKY A;  1UGY C;  2BMY A;  1J4T A;  3VZF A;  4QX1 A;  1JOT A;  1ZGR A;  2NU5 A;  1I5P A;  2HYQ A;  1UH0 A;  4GX7 A;  4D8M A;  2QP2 A;  3P8S A;  2BMZ A;  3TOW A;  2GUD A;  2C9K A;  1UGY A;  1ZGS A;  1VMO A;  2HYR A;  1DLC A;  5J4X A;  1TP8 A;  4PIF A;  5BN6 E;  4R6N A;  5J51 A;  1UGW A;  5J4T A;  1VBP A;  2BN0 A;  4MQ0 A;  3LLZ A;  4W8J A;  3VZE A;  1OUW A;  1J4S A;  3O44 A;  1XXR A;  3R52 A;  1J4U A;  2GUX A;  3VZG A;  3MIU A;  4MOA A;  2GTY A; 
#chains in the Genus database with same CATH homology
 3MIT A;  1WS4 C;  1UGX A;  3APA A;  1UH1 A;  5J50 A;  4DDN A;  4AKC A;  5AV7 A;  1TOQ A;  4PIT A;  3R51 A;  2GUC A;  4AKD A;  3WOB A;  3LLY A;  4AKB A;  1XXQ A;  4R6P A;  1KU8 A;  3LL1 A;  4R6O A;  3LL0 A;  4PIK A;  1VBO A;  3AQG A;  1X1V A;  1C3N A;  1PXD A;  3VY7 A;  1WS5 C;  3LL2 A;  1JAC A;  1UGW C;  3R50 A;  4AK4 A;  4R6R A;  1KUJ A;  5EXG A;  1M26 A;  2NUO A;  1C3M A;  1XEZ A;  3WOC A;  4WOG A;  4PIU A;  3VY6 A;  1WS4 A;  2JZ4 A;  2GUE A;  4R6Q A;  1C3K A;  3LM1 A;  3MIV A;  5JM1 A;  1WS5 A;  3LKY A;  1UGY C;  2BMY A;  1J4T A;  3VZF A;  1JOT A;  1ZGR A;  2NU5 A;  2HYQ A;  1UH0 A;  4GX7 A;  3P8S A;  2BMZ A;  2GUD A;  1UGY A;  1ZGS A;  2HYR A;  5J4X A;  1TP8 A;  4PIF A;  5BN6 E;  4R6N A;  5J51 A;  1UGW A;  5J4T A;  1VBP A;  2BN0 A;  4MQ0 A;  3LLZ A;  3VZE A;  1OUW A;  1J4S A;  3O44 A;  1XXR A;  3R52 A;  1J4U A;  2GUX A;  3VZG A;  3MIU A;  2GTY A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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