3VY7A

Crystal structure of human pancreatic secretory protein zg16p with o-(alpha-d-mannosyl)-l-serine
Total Genus 31
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
31
sequence length
138
structure length
138
Chain Sequence
RSSSYSGEYGSGGGKRFSHSGNQLDGPITALRVRVNTYYIVGLQVRYGKVWSDYVGGRNGDLEEIFLHPGESVIQVSGKYKWYLKKLVFVTDKGRYLSFGKDSGTSFNAVPLHPNTVLRFISGRSGSLIDAIGLHWDV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis for Multiple Sugar Recognition of Jacalin-related Human ZG16p Lectin
pubmed doi rcsb
molecule tags Sugar binding protein
source organism Homo sapiens
molecule keywords Zymogen granule membrane protein 16
total genus 31
structure length 138
sequence length 138
ec nomenclature
pdb deposition date 2012-09-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3vy7A00
3O44A 3LLYA 3LL0A 4AKCA 4DDNA 3WOCA 1JACA 2GUCA 1J4SA 1XXRA 3VY7A 1C3KA 1VBPA 5J51A 2GTYA 4MQ0A 3MITA 5JM1A 1WS5A 4AK4A 1PXDA 3LL1A 2BMYA 1WS4C 2HYQA 1KUJA 3LKYA 1UGYC 1X1VA 1KU8A 2NUOA 1C3NA 4PIUA 2BMZA 4R6QA 2JZ4A 1UGWC 2HYRA 1UGXA 1UGWA 1C3MA 1ZGSA 4R6PA 3R52A 3APAA 3MIVA 5BN6E 1UH0A 3P8SA 3R50A 2GUEA 1WS4A 3MIUA 2GUDA 3R51A 1TP8A 1UGYA 4R6OA 4PIKA 1J4UA 1XEZA 1M26A 3VZEA 1J4TA 1XXQA 3VZFA 1TOQA 1UH1A 4R6RA 3VZGA 1VBOA 3LLZA 5J4TA 3AQGA 4PITA 3WOBA 4GX7A 5J4XA 4R6NA 5J50A 2GUXA 4WOGA 4AKBA 4AKDA 2NU5A 3LL2A 3VY6A 2BN0A 1ZGRA 1OUWA 3LM1A 5EXGA 1JOTA 5AV7A 4PIFA 1WS5C
chains in the Genus database with same CATH superfamily
3O44A 3EB7A 3LLYA 3LL0A 4AKCA 4DDNA 3WOCA 1JACA 2GUCA 1DLCA 1J4SA 1XXRA 3VY7A 1C3KA 1VBPA 4D8MA 2QP2A 5J51A 2GTYA 4MQ0A 3MITA 5JM1A 1WS5A 4AK4A 4ARXA 1PXDA 1I5PA 3LL1A 2BMYA 1WS4C 2HYQA 1KUJA 3LKYA 2C9KA 1W99A 1UGYC 1X1VA 1KU8A 2NUOA 1C3NA 4PIUA 2BMZA 4R6QA 2JZ4A 1UGWC 2HYRA 1UGXA 1UGWA 1C3MA 1ZGSA 4R6PA 4ARYA 4QX1A 3R52A 3APAA 3MIVA 5BN6E 1UH0A 4MOAA 3P8SA 3R50A 2GUEA 1WS4A 3MIUA 2GUDA 1CIYA 3R51A 1TP8A 1UGYA 4R6OA 4PIKA 4QX0A 1J4UA 1XEZA 1M26A 3VZEA 4QX2A 1J4TA 1XXQA 4W8JA 3VZFA 1TOQA 1UH1A 4R6RA 3VZGA 1VBOA 3LLZA 1VMOA 5J4TA 3AQGA 4PITA 3TOWA 3WOBA 4GX7A 5J4XA 4R6NA 5J50A 2GUXA 4WOGA 4AKBA 1JI6A 4AKDA 2NU5A 4QX3A 3LL2A 2BN0A 3VY6A 1ZGRA 1OUWA 3LM1A 5EXGA 1JOTA 5AV7A 4PIFA 1WS5C
chains in the Genus database with same CATH topology
3O44A 3LLYA 3LL0A 4AKCA 4DDNA 3WOCA 1JACA 2GUCA 1J4SA 1XXRA 3VY7A 1C3KA 1VBPA 5J51A 2GTYA 4MQ0A 3MITA 5JM1A 1WS5A 4AK4A 1PXDA 3LL1A 2BMYA 1WS4C 2HYQA 1KUJA 3LKYA 1UGYC 1X1VA 1KU8A 2NUOA 1C3NA 4PIUA 2BMZA 4R6QA 2JZ4A 1UGWC 2HYRA 1UGXA 1UGWA 1C3MA 1ZGSA 4R6PA 3R52A 3APAA 3MIVA 5BN6E 1UH0A 3P8SA 3R50A 2GUEA 1WS4A 3MIUA 2GUDA 3R51A 1TP8A 1UGYA 4R6OA 4PIKA 1J4UA 1XEZA 1M26A 3VZEA 1J4TA 1XXQA 3VZFA 1TOQA 1UH1A 4R6RA 3VZGA 1VBOA 3LLZA 5J4TA 3AQGA 4PITA 3WOBA 4GX7A 5J4XA 4R6NA 5J50A 2GUXA 4WOGA 4AKBA 4AKDA 2NU5A 3LL2A 3VY6A 2BN0A 1ZGRA 1OUWA 3LM1A 5EXGA 1JOTA 5AV7A 4PIFA 1WS5C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3O44 A;  3LLY A;  3LL0 A;  4AKC A;  4DDN A;  3WOC A;  1JAC A;  2GUC A;  1J4S A;  1XXR A;  3VY7 A;  1C3K A;  1VBP A;  5J51 A;  2GTY A;  4MQ0 A;  3MIT A;  5JM1 A;  1WS5 A;  4AK4 A;  1PXD A;  3LL1 A;  2BMY A;  1WS4 C;  2HYQ A;  1KUJ A;  3LKY A;  1UGY C;  1X1V A;  1KU8 A;  2NUO A;  1C3N A;  4PIU A;  2BMZ A;  4R6Q A;  2JZ4 A;  1UGW C;  2HYR A;  1UGX A;  1UGW A;  1C3M A;  1ZGS A;  4R6P A;  3R52 A;  3APA A;  3MIV A;  5BN6 E;  1UH0 A;  3P8S A;  3R50 A;  2GUE A;  1WS4 A;  3MIU A;  2GUD A;  3R51 A;  1TP8 A;  1UGY A;  4R6O A;  4PIK A;  1J4U A;  1XEZ A;  1M26 A;  3VZE A;  1J4T A;  1XXQ A;  3VZF A;  1TOQ A;  1UH1 A;  4R6R A;  3VZG A;  1VBO A;  3LLZ A;  5J4T A;  3AQG A;  4PIT A;  3WOB A;  4GX7 A;  5J4X A;  4R6N A;  5J50 A;  2GUX A;  4WOG A;  4AKB A;  4AKD A;  2NU5 A;  3LL2 A;  3VY6 A;  2BN0 A;  1ZGR A;  1OUW A;  3LM1 A;  5EXG A;  1JOT A;  5AV7 A;  4PIF A;  1WS5 C; 
#chains in the Genus database with same CATH topology
 3O44 A;  3EB7 A;  3LLY A;  3LL0 A;  4AKC A;  4DDN A;  3WOC A;  1JAC A;  2GUC A;  1DLC A;  1J4S A;  1XXR A;  3VY7 A;  1C3K A;  1VBP A;  4D8M A;  2QP2 A;  5J51 A;  2GTY A;  4MQ0 A;  3MIT A;  5JM1 A;  1WS5 A;  4AK4 A;  4ARX A;  1PXD A;  1I5P A;  3LL1 A;  2BMY A;  1WS4 C;  2HYQ A;  1KUJ A;  3LKY A;  2C9K A;  1W99 A;  1UGY C;  1X1V A;  1KU8 A;  2NUO A;  1C3N A;  4PIU A;  2BMZ A;  4R6Q A;  2JZ4 A;  1UGW C;  2HYR A;  1UGX A;  1UGW A;  1C3M A;  1ZGS A;  4R6P A;  4ARY A;  4QX1 A;  3R52 A;  3APA A;  3MIV A;  5BN6 E;  1UH0 A;  4MOA A;  3P8S A;  3R50 A;  2GUE A;  1WS4 A;  3MIU A;  2GUD A;  1CIY A;  3R51 A;  1TP8 A;  1UGY A;  4R6O A;  4PIK A;  4QX0 A;  1J4U A;  1XEZ A;  1M26 A;  3VZE A;  4QX2 A;  1J4T A;  1XXQ A;  4W8J A;  3VZF A;  1TOQ A;  1UH1 A;  4R6R A;  3VZG A;  1VBO A;  3LLZ A;  1VMO A;  5J4T A;  3AQG A;  4PIT A;  3TOW A;  3WOB A;  4GX7 A;  5J4X A;  4R6N A;  5J50 A;  2GUX A;  4WOG A;  4AKB A;  1JI6 A;  4AKD A;  2NU5 A;  4QX3 A;  3LL2 A;  2BN0 A;  3VY6 A;  1ZGR A;  1OUW A;  3LM1 A;  5EXG A;  1JOT A;  5AV7 A;  4PIF A;  1WS5 C; 
#chains in the Genus database with same CATH homology
 3O44 A;  3LLY A;  3LL0 A;  4AKC A;  4DDN A;  3WOC A;  1JAC A;  2GUC A;  1J4S A;  1XXR A;  3VY7 A;  1C3K A;  1VBP A;  5J51 A;  2GTY A;  4MQ0 A;  3MIT A;  5JM1 A;  1WS5 A;  4AK4 A;  1PXD A;  3LL1 A;  2BMY A;  1WS4 C;  2HYQ A;  1KUJ A;  3LKY A;  1UGY C;  1X1V A;  1KU8 A;  2NUO A;  1C3N A;  4PIU A;  2BMZ A;  4R6Q A;  2JZ4 A;  1UGW C;  2HYR A;  1UGX A;  1UGW A;  1C3M A;  1ZGS A;  4R6P A;  3R52 A;  3APA A;  3MIV A;  5BN6 E;  1UH0 A;  3P8S A;  3R50 A;  2GUE A;  1WS4 A;  3MIU A;  2GUD A;  3R51 A;  1TP8 A;  1UGY A;  4R6O A;  4PIK A;  1J4U A;  1XEZ A;  1M26 A;  3VZE A;  1J4T A;  1XXQ A;  3VZF A;  1TOQ A;  1UH1 A;  4R6R A;  3VZG A;  1VBO A;  3LLZ A;  5J4T A;  3AQG A;  4PIT A;  3WOB A;  4GX7 A;  5J4X A;  4R6N A;  5J50 A;  2GUX A;  4WOG A;  4AKB A;  4AKD A;  2NU5 A;  3LL2 A;  3VY6 A;  2BN0 A;  1ZGR A;  1OUW A;  3LM1 A;  5EXG A;  1JOT A;  5AV7 A;  4PIF A;  1WS5 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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