3VZE | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	138
structure length	138
Chain Sequence	RSSSYSGEYGSGGGKRFSHSGNQLDGPITALRVRVNTYYIVGLQVRYGKVWSDYVGGRNGDLEEIFLHPGESVIQVSGKYKWYLKKLVFVTDKGRYLSFGKDSGTSFNAVPLHPNTVLRFISGRSGSLIDAIGLHWDV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
source organism	Homo sapiens
publication title	Structural Basis for Multiple Sugar Recognition of Jacalin-related Human ZG16p Lectin pubmed doi rcsb
molecule keywords	Zymogen granule membrane protein 16
total genus	32
structure length	138
sequence length	138
ec nomenclature
pdb deposition date	2012-10-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	3vzeA00

1UGXA 3VZEA 3LKYA 5J4XA 3MIVA 1ZGSA 4R6PA 1M26A 2NUOA 3R51A 3LL0A 3O44A 3P8SA 4DDNA 2HYRA 3LM1A 1UGWA 4R6QA 1XXRA 1KU8A 3VY6A 2GUXA 1UGYA 1J4SA 3VZGA 4R6RA 1C3KA 3AQGA 3LL2A 3WOBA 4R6NA 1OUWA 2GUDA 1ZGRA 1VBPA 3R52A 1UH1A 5J51A 5EXGA 1WS4C 4AK4A 4PIUA 1TP8A 1UGYC 3MIUA 1WS5C 3R50A 1C3NA 3LL1A 1TOQA 4R6OA 5J4TA 4PIFA 3VZFA 1VBOA 2JZ4A 4AKBA 1JOTA 1XEZA 4WOGA 2GUEA 3VY7A 5BN6E 2GUCA 4PITA 4PIKA 2HYQA 4MQ0A 3LLYA 5J50A 1UGWC 1UH0A 1XXQA 2BMYA 3WOCA 3APAA 2BMZA 4AKCA 3LLZA 1C3MA 1PXDA 5AV7A 1KUJA 4GX7A 1J4TA 1WS4A 4AKDA 1X1VA 1JACA 2BN0A 3MITA 2NU5A 2GTYA 1WS5A 1J4UA 5JM1A
chains in the Genus database with same CATH superfamily

1UGXA 3VZEA 3LKYA 5J4XA 2C9KA 3MIVA 1ZGSA 4R6PA 1M26A 2NUOA 4MOAA 3R51A 3LL0A 3O44A 3P8SA 4DDNA 2HYRA 3LM1A 1UGWA 4R6QA 1XXRA 1KU8A 4W8JA 3VY6A 2GUXA 1UGYA 1J4SA 3VZGA 4R6RA 1C3KA 1DLCA 3AQGA 3LL2A 3WOBA 4R6NA 1OUWA 1CIYA 2GUDA 1ZGRA 1VBPA 3R52A 1UH1A 5J51A 5EXGA 1WS4C 4AK4A 4PIUA 3EB7A 1TP8A 1UGYC 3MIUA 1WS5C 3R50A 1C3NA 3LL1A 1TOQA 4R6OA 5J4TA 1I5PA 4PIFA 4ARXA 3VZFA 1VBOA 2JZ4A 4ARYA 4AKBA 1JOTA 1XEZA 4WOGA 2GUEA 3VY7A 5BN6E 2GUCA 3TOWA 4PITA 4PIKA 4MQ0A 2HYQA 3LLYA 5J50A 1UGWC 1UH0A 1JI6A 1XXQA 2BMYA 1VMOA 3WOCA 3APAA 2BMZA 4AKCA 3LLZA 1C3MA 1PXDA 5AV7A 1KUJA 4QX2A 4QX1A 4GX7A 1J4TA 1WS4A 4AKDA 1X1VA 4QX3A 1W99A 1JACA 2QP2A 4D8MA 2BN0A 4QX0A 3MITA 2NU5A 2GTYA 1WS5A 1J4UA 5JM1A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1UGX A;  3VZE A;  3LKY A;  5J4X A;  3MIV A;  1ZGS A;  4R6P A;  1M26 A;  2NUO A;  3R51 A;  3LL0 A;  3O44 A;  3P8S A;  4DDN A;  2HYR A;  3LM1 A;  1UGW A;  4R6Q A;  1XXR A;  1KU8 A;  3VY6 A;  2GUX A;  1UGY A;  1J4S A;  3VZG A;  4R6R A;  1C3K A;  3AQG A;  3LL2 A;  3WOB A;  4R6N A;  1OUW A;  2GUD A;  1ZGR A;  1VBP A;  3R52 A;  1UH1 A;  5J51 A;  5EXG A;  1WS4 C;  4AK4 A;  4PIU A;  1TP8 A;  1UGY C;  3MIU A;  1WS5 C;  3R50 A;  1C3N A;  3LL1 A;  1TOQ A;  4R6O A;  5J4T A;  4PIF A;  3VZF A;  1VBO A;  2JZ4 A;  4AKB A;  1JOT A;  1XEZ A;  4WOG A;  2GUE A;  3VY7 A;  5BN6 E;  2GUC A;  4PIT A;  4PIK A;  2HYQ A;  4MQ0 A;  3LLY A;  5J50 A;  1UGW C;  1UH0 A;  1XXQ A;  2BMY A;  3WOC A;  3APA A;  2BMZ A;  4AKC A;  3LLZ A;  1C3M A;  1PXD A;  5AV7 A;  1KUJ A;  4GX7 A;  1J4T A;  1WS4 A;  4AKD A;  1X1V A;  1JAC A;  2BN0 A;  3MIT A;  2NU5 A;  2GTY A;  1WS5 A;  1J4U A;  5JM1 A; 
#chains in the Genus database with same CATH topology
 1UGX A;  3VZE A;  3LKY A;  5J4X A;  2C9K A;  3MIV A;  1ZGS A;  4R6P A;  1M26 A;  2NUO A;  4MOA A;  3R51 A;  3LL0 A;  3O44 A;  3P8S A;  4DDN A;  2HYR A;  3LM1 A;  1UGW A;  4R6Q A;  1XXR A;  1KU8 A;  4W8J A;  3VY6 A;  2GUX A;  1UGY A;  1J4S A;  3VZG A;  4R6R A;  1C3K A;  1DLC A;  3AQG A;  3LL2 A;  3WOB A;  4R6N A;  1OUW A;  1CIY A;  2GUD A;  1ZGR A;  1VBP A;  3R52 A;  1UH1 A;  5J51 A;  5EXG A;  1WS4 C;  4AK4 A;  4PIU A;  3EB7 A;  1TP8 A;  1UGY C;  3MIU A;  1WS5 C;  3R50 A;  1C3N A;  3LL1 A;  1TOQ A;  4R6O A;  5J4T A;  1I5P A;  4PIF A;  4ARX A;  3VZF A;  1VBO A;  2JZ4 A;  4ARY A;  4AKB A;  1JOT A;  1XEZ A;  4WOG A;  2GUE A;  3VY7 A;  5BN6 E;  2GUC A;  3TOW A;  4PIT A;  4PIK A;  4MQ0 A;  2HYQ A;  3LLY A;  5J50 A;  1UGW C;  1UH0 A;  1JI6 A;  1XXQ A;  2BMY A;  1VMO A;  3WOC A;  3APA A;  2BMZ A;  4AKC A;  3LLZ A;  1C3M A;  1PXD A;  5AV7 A;  1KUJ A;  4QX2 A;  4QX1 A;  4GX7 A;  1J4T A;  1WS4 A;  4AKD A;  1X1V A;  4QX3 A;  1W99 A;  1JAC A;  2QP2 A;  4D8M A;  2BN0 A;  4QX0 A;  3MIT A;  2NU5 A;  2GTY A;  1WS5 A;  1J4U A;  5JM1 A; 
#chains in the Genus database with same CATH homology
 1UGX A;  3VZE A;  3LKY A;  5J4X A;  3MIV A;  1ZGS A;  4R6P A;  1M26 A;  2NUO A;  3R51 A;  3LL0 A;  3O44 A;  3P8S A;  4DDN A;  2HYR A;  3LM1 A;  1UGW A;  4R6Q A;  1XXR A;  1KU8 A;  3VY6 A;  2GUX A;  1UGY A;  1J4S A;  3VZG A;  4R6R A;  1C3K A;  3AQG A;  3LL2 A;  3WOB A;  4R6N A;  1OUW A;  2GUD A;  1ZGR A;  1VBP A;  3R52 A;  1UH1 A;  5J51 A;  5EXG A;  1WS4 C;  4AK4 A;  4PIU A;  1TP8 A;  1UGY C;  3MIU A;  1WS5 C;  3R50 A;  1C3N A;  3LL1 A;  1TOQ A;  4R6O A;  5J4T A;  4PIF A;  3VZF A;  1VBO A;  2JZ4 A;  4AKB A;  1JOT A;  1XEZ A;  4WOG A;  2GUE A;  3VY7 A;  5BN6 E;  2GUC A;  4PIT A;  4PIK A;  2HYQ A;  4MQ0 A;  3LLY A;  5J50 A;  1UGW C;  1UH0 A;  1XXQ A;  2BMY A;  3WOC A;  3APA A;  2BMZ A;  4AKC A;  3LLZ A;  1C3M A;  1PXD A;  5AV7 A;  1KUJ A;  4GX7 A;  1J4T A;  1WS4 A;  4AKD A;  1X1V A;  1JAC A;  2BN0 A;  3MIT A;  2NU5 A;  2GTY A;  1WS5 A;  1J4U A;  5JM1 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3VZEA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations