3VZFA

Crystal structure of human pancreatic secretory protein zg16p with methyl alpha-d-mannopyranoside
Total Genus 26
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
26
sequence length
138
structure length
138
Chain Sequence
RSSSYSGEYGSGGGKRFSHSGNQLDGPITALRVRVNTYYIVGLQVRYGKVWSDYVGGRNGDLEEIFLHPGESVIQVSGKYKWYLKKLVFVTDKGRYLSFGKDSGTSFNAVPLHPNTVLRFISGRSGSLIDAIGLHWDV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Basis for Multiple Sugar Recognition of Jacalin-related Human ZG16p Lectin
pubmed doi rcsb
molecule tags Sugar binding protein
source organism Homo sapiens
molecule keywords Zymogen granule membrane protein 16
total genus 26
structure length 138
sequence length 138
ec nomenclature
pdb deposition date 2012-10-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3vzfA00
1XEZA 4DDNA 1XXRA 1J4UA 4PIFA 5AV7A 1OUWA 2GUEA 2HYRA 1WS4A 3AQGA 2NUOA 1JOTA 4PIKA 4AKCA 2GTYA 1X1VA 1UGYA 2GUXA 3VZEA 3LL2A 4MQ0A 3MITA 2NU5A 2BMZA 4R6OA 3O44A 4R6QA 3P8SA 4R6NA 3VY7A 1PXDA 1WS5A 2BMYA 5BN6E 5J4TA 1J4SA 5J51A 1M26A 4GX7A 2GUCA 1TOQA 1KU8A 3LLZA 5J50A 1UGWA 2JZ4A 3VZGA 1KUJA 3LM1A 1WS4C 4PITA 2HYQA 4PIUA 1VBOA 1TP8A 3VY6A 1JACA 4WOGA 3APAA 1UH1A 1UGYC 1UH0A 3WOCA 4AKDA 3LLYA 3VZFA 1J4TA 4R6RA 1WS5C 1C3NA 4AK4A 1XXQA 5EXGA 3R52A 1UGWC 1ZGRA 3R51A 3LKYA 5JM1A 3WOBA 2GUDA 3R50A 1C3MA 1C3KA 3MIUA 1VBPA 3LL0A 3LL1A 4AKBA 1ZGSA 1UGXA 5J4XA 2BN0A 3MIVA 4R6PA
chains in the Genus database with same CATH superfamily
1XEZA 4DDNA 4W8JA 1XXRA 1J4UA 4PIFA 5AV7A 1OUWA 2GUEA 4ARYA 4MOAA 2HYRA 2QP2A 1WS4A 3AQGA 2NUOA 1JOTA 4PIKA 4AKCA 2GTYA 1X1VA 1JI6A 1UGYA 2GUXA 3VZEA 3LL2A 4MQ0A 3MITA 3EB7A 2NU5A 2BMZA 4R6OA 3O44A 4R6QA 3P8SA 4R6NA 3VY7A 1I5PA 1PXDA 1WS5A 2BMYA 5BN6E 5J4TA 1J4SA 5J51A 1M26A 4GX7A 2GUCA 1TOQA 3TOWA 4ARXA 1KU8A 3LLZA 4QX1A 5J50A 1UGWA 2JZ4A 3VZGA 1KUJA 3LM1A 1WS4C 4PITA 2HYQA 4PIUA 1VBOA 4QX0A 1TP8A 3VY6A 1JACA 4WOGA 3APAA 1UH1A 1UGYC 1UH0A 1W99A 3WOCA 4AKDA 3LLYA 1CIYA 4QX3A 3VZFA 1J4TA 2C9KA 4R6RA 1DLCA 1WS5C 1C3NA 4AK4A 4D8MA 1XXQA 5EXGA 3R52A 1UGWC 1ZGRA 3R51A 3LKYA 5JM1A 3WOBA 2GUDA 3R50A 1C3MA 1C3KA 3MIUA 1VMOA 1VBPA 3LL0A 3LL1A 4AKBA 1ZGSA 1UGXA 4QX2A 5J4XA 2BN0A 3MIVA 4R6PA
chains in the Genus database with same CATH topology
1XEZA 4DDNA 1XXRA 1J4UA 4PIFA 5AV7A 1OUWA 2GUEA 2HYRA 1WS4A 3AQGA 2NUOA 1JOTA 4PIKA 4AKCA 2GTYA 1X1VA 1UGYA 2GUXA 3VZEA 3LL2A 4MQ0A 3MITA 2NU5A 2BMZA 4R6OA 3O44A 4R6QA 3P8SA 4R6NA 3VY7A 1PXDA 1WS5A 2BMYA 5BN6E 5J4TA 1J4SA 5J51A 1M26A 4GX7A 2GUCA 1TOQA 1KU8A 3LLZA 5J50A 1UGWA 2JZ4A 3VZGA 1KUJA 3LM1A 1WS4C 4PITA 2HYQA 4PIUA 1VBOA 1TP8A 3VY6A 1JACA 4WOGA 3APAA 1UH1A 1UGYC 1UH0A 3WOCA 4AKDA 3LLYA 3VZFA 1J4TA 4R6RA 1WS5C 1C3NA 4AK4A 1XXQA 5EXGA 3R52A 1UGWC 1ZGRA 3R51A 3LKYA 5JM1A 3WOBA 2GUDA 3R50A 1C3MA 1C3KA 3MIUA 1VBPA 3LL0A 3LL1A 4AKBA 1ZGSA 1UGXA 5J4XA 2BN0A 3MIVA 4R6PA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1XEZ A;  4DDN A;  1XXR A;  1J4U A;  4PIF A;  5AV7 A;  1OUW A;  2GUE A;  2HYR A;  1WS4 A;  3AQG A;  2NUO A;  1JOT A;  4PIK A;  4AKC A;  2GTY A;  1X1V A;  1UGY A;  2GUX A;  3VZE A;  3LL2 A;  4MQ0 A;  3MIT A;  2NU5 A;  2BMZ A;  4R6O A;  3O44 A;  4R6Q A;  3P8S A;  4R6N A;  3VY7 A;  1PXD A;  1WS5 A;  2BMY A;  5BN6 E;  5J4T A;  1J4S A;  5J51 A;  1M26 A;  4GX7 A;  2GUC A;  1TOQ A;  1KU8 A;  3LLZ A;  5J50 A;  1UGW A;  2JZ4 A;  3VZG A;  1KUJ A;  3LM1 A;  1WS4 C;  4PIT A;  2HYQ A;  4PIU A;  1VBO A;  1TP8 A;  3VY6 A;  1JAC A;  4WOG A;  3APA A;  1UH1 A;  1UGY C;  1UH0 A;  3WOC A;  4AKD A;  3LLY A;  3VZF A;  1J4T A;  4R6R A;  1WS5 C;  1C3N A;  4AK4 A;  1XXQ A;  5EXG A;  3R52 A;  1UGW C;  1ZGR A;  3R51 A;  3LKY A;  5JM1 A;  3WOB A;  2GUD A;  3R50 A;  1C3M A;  1C3K A;  3MIU A;  1VBP A;  3LL0 A;  3LL1 A;  4AKB A;  1ZGS A;  1UGX A;  5J4X A;  2BN0 A;  3MIV A;  4R6P A; 
#chains in the Genus database with same CATH topology
 1XEZ A;  4DDN A;  4W8J A;  1XXR A;  1J4U A;  4PIF A;  5AV7 A;  1OUW A;  2GUE A;  4ARY A;  4MOA A;  2HYR A;  2QP2 A;  1WS4 A;  3AQG A;  2NUO A;  1JOT A;  4PIK A;  4AKC A;  2GTY A;  1X1V A;  1JI6 A;  1UGY A;  2GUX A;  3VZE A;  3LL2 A;  4MQ0 A;  3MIT A;  3EB7 A;  2NU5 A;  2BMZ A;  4R6O A;  3O44 A;  4R6Q A;  3P8S A;  4R6N A;  3VY7 A;  1I5P A;  1PXD A;  1WS5 A;  2BMY A;  5BN6 E;  5J4T A;  1J4S A;  5J51 A;  1M26 A;  4GX7 A;  2GUC A;  1TOQ A;  3TOW A;  4ARX A;  1KU8 A;  3LLZ A;  4QX1 A;  5J50 A;  1UGW A;  2JZ4 A;  3VZG A;  1KUJ A;  3LM1 A;  1WS4 C;  4PIT A;  2HYQ A;  4PIU A;  1VBO A;  4QX0 A;  1TP8 A;  3VY6 A;  1JAC A;  4WOG A;  3APA A;  1UH1 A;  1UGY C;  1UH0 A;  1W99 A;  3WOC A;  4AKD A;  3LLY A;  1CIY A;  4QX3 A;  3VZF A;  1J4T A;  2C9K A;  4R6R A;  1DLC A;  1WS5 C;  1C3N A;  4AK4 A;  4D8M A;  1XXQ A;  5EXG A;  3R52 A;  1UGW C;  1ZGR A;  3R51 A;  3LKY A;  5JM1 A;  3WOB A;  2GUD A;  3R50 A;  1C3M A;  1C3K A;  3MIU A;  1VMO A;  1VBP A;  3LL0 A;  3LL1 A;  4AKB A;  1ZGS A;  1UGX A;  4QX2 A;  5J4X A;  2BN0 A;  3MIV A;  4R6P A; 
#chains in the Genus database with same CATH homology
 1XEZ A;  4DDN A;  1XXR A;  1J4U A;  4PIF A;  5AV7 A;  1OUW A;  2GUE A;  2HYR A;  1WS4 A;  3AQG A;  2NUO A;  1JOT A;  4PIK A;  4AKC A;  2GTY A;  1X1V A;  1UGY A;  2GUX A;  3VZE A;  3LL2 A;  4MQ0 A;  3MIT A;  2NU5 A;  2BMZ A;  4R6O A;  3O44 A;  4R6Q A;  3P8S A;  4R6N A;  3VY7 A;  1PXD A;  1WS5 A;  2BMY A;  5BN6 E;  5J4T A;  1J4S A;  5J51 A;  1M26 A;  4GX7 A;  2GUC A;  1TOQ A;  1KU8 A;  3LLZ A;  5J50 A;  1UGW A;  2JZ4 A;  3VZG A;  1KUJ A;  3LM1 A;  1WS4 C;  4PIT A;  2HYQ A;  4PIU A;  1VBO A;  1TP8 A;  3VY6 A;  1JAC A;  4WOG A;  3APA A;  1UH1 A;  1UGY C;  1UH0 A;  3WOC A;  4AKD A;  3LLY A;  3VZF A;  1J4T A;  4R6R A;  1WS5 C;  1C3N A;  4AK4 A;  1XXQ A;  5EXG A;  3R52 A;  1UGW C;  1ZGR A;  3R51 A;  3LKY A;  5JM1 A;  3WOB A;  2GUD A;  3R50 A;  1C3M A;  1C3K A;  3MIU A;  1VBP A;  3LL0 A;  3LL1 A;  4AKB A;  1ZGS A;  1UGX A;  5J4X A;  2BN0 A;  3MIV A;  4R6P A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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