3VZG | Genus

Total Genus 25

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	25
sequence length	138
structure length	138
Chain Sequence	RSSSYSGEYGSGGGKRFSHSGNQLDGPITALRVRVNTYYIVGLQVRYGKVWSDYVGGRNGDLEEIFLHPGESVIQVSGKYKWYLKKLVFVTDKGRYLSFGKDSGTSFNAVPLHPNTVLRFISGRSGSLIDAIGLHWDV

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
source organism	Homo sapiens
publication title	Structural Basis for Multiple Sugar Recognition of Jacalin-related Human ZG16p Lectin pubmed doi rcsb
molecule keywords	Zymogen granule membrane protein 16
total genus	25
structure length	138
sequence length	138
ec nomenclature
pdb deposition date	2012-10-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	3vzgA00

1WS4C 5JM1A 4R6NA 3MITA 4R6PA 1C3NA 5EXGA 4AKCA 3R51A 1J4SA 1UGXA 2NU5A 3APAA 3MIUA 4PIUA 2JZ4A 5J50A 1M26A 1UGYC 2GTYA 3VZFA 4R6QA 4WOGA 1WS4A 2BMZA 1XXRA 5AV7A 3LLYA 3O44A 1ZGRA 1ZGSA 4AKBA 2HYRA 1X1VA 1J4TA 1C3KA 2GUXA 3LM1A 3VY6A 4MQ0A 1C3MA 3WOBA 5J4TA 4PIFA 3P8SA 1TOQA 1UH1A 3VZGA 1TP8A 4AKDA 3LLZA 1JACA 3VZEA 1WS5C 1KU8A 1KUJA 3LL2A 5J51A 1UGYA 1JOTA 3LKYA 2NUOA 3MIVA 5J4XA 4DDNA 2BMYA 1J4UA 4PITA 1VBPA 1UGWC 3WOCA 3R52A 3AQGA 2GUEA 3LL0A 2BN0A 1WS5A 2GUDA 3LL1A 1VBOA 3R50A 1XXQA 1OUWA 4GX7A 4R6RA 4PIKA 4AK4A 5BN6E 2HYQA 4R6OA 1XEZA 1UGWA 1PXDA 1UH0A 3VY7A 2GUCA
chains in the Genus database with same CATH superfamily

1WS4C 5JM1A 4R6NA 3MITA 4R6PA 1C3NA 5EXGA 1DLCA 4AKCA 3R51A 1J4SA 1UGXA 2NU5A 3APAA 3MIUA 4PIUA 2JZ4A 5J50A 1M26A 1UGYC 2GTYA 3VZFA 4R6QA 4WOGA 1WS4A 2BMZA 1XXRA 5AV7A 3LLYA 3O44A 1ZGRA 1ZGSA 4AKBA 2HYRA 1X1VA 1VMOA 1J4TA 1C3KA 2GUXA 3LM1A 3VY6A 4MQ0A 1C3MA 2QP2A 4D8MA 1W99A 3WOBA 5J4TA 4PIFA 3TOWA 4QX3A 3P8SA 1TOQA 1UH1A 3VZGA 1TP8A 4AKDA 3LLZA 1JACA 4W8JA 3VZEA 1CIYA 1WS5C 1KU8A 1I5PA 1KUJA 3LL2A 5J51A 1UGYA 1JOTA 3LKYA 2NUOA 3MIVA 5J4XA 4DDNA 2BMYA 1J4UA 4MOAA 4PITA 1VBPA 1UGWC 2C9KA 3WOCA 3R52A 3AQGA 2GUEA 3LL0A 2BN0A 1WS5A 2GUDA 3LL1A 1VBOA 3R50A 1XXQA 4ARYA 1OUWA 4GX7A 4R6RA 4PIKA 4AK4A 5BN6E 1JI6A 2HYQA 4QX1A 4R6OA 1XEZA 1UGWA 1PXDA 1UH0A 4QX2A 4ARXA 4QX0A 3VY7A 2GUCA 3EB7A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1WS4 C;  5JM1 A;  4R6N A;  3MIT A;  4R6P A;  1C3N A;  5EXG A;  4AKC A;  3R51 A;  1J4S A;  1UGX A;  2NU5 A;  3APA A;  3MIU A;  4PIU A;  2JZ4 A;  5J50 A;  1M26 A;  1UGY C;  2GTY A;  3VZF A;  4R6Q A;  4WOG A;  1WS4 A;  2BMZ A;  1XXR A;  5AV7 A;  3LLY A;  3O44 A;  1ZGR A;  1ZGS A;  4AKB A;  2HYR A;  1X1V A;  1J4T A;  1C3K A;  2GUX A;  3LM1 A;  3VY6 A;  4MQ0 A;  1C3M A;  3WOB A;  5J4T A;  4PIF A;  3P8S A;  1TOQ A;  1UH1 A;  3VZG A;  1TP8 A;  4AKD A;  3LLZ A;  1JAC A;  3VZE A;  1WS5 C;  1KU8 A;  1KUJ A;  3LL2 A;  5J51 A;  1UGY A;  1JOT A;  3LKY A;  2NUO A;  3MIV A;  5J4X A;  4DDN A;  2BMY A;  1J4U A;  4PIT A;  1VBP A;  1UGW C;  3WOC A;  3R52 A;  3AQG A;  2GUE A;  3LL0 A;  2BN0 A;  1WS5 A;  2GUD A;  3LL1 A;  1VBO A;  3R50 A;  1XXQ A;  1OUW A;  4GX7 A;  4R6R A;  4PIK A;  4AK4 A;  5BN6 E;  2HYQ A;  4R6O A;  1XEZ A;  1UGW A;  1PXD A;  1UH0 A;  3VY7 A;  2GUC A; 
#chains in the Genus database with same CATH topology
 1WS4 C;  5JM1 A;  4R6N A;  3MIT A;  4R6P A;  1C3N A;  5EXG A;  1DLC A;  4AKC A;  3R51 A;  1J4S A;  1UGX A;  2NU5 A;  3APA A;  3MIU A;  4PIU A;  2JZ4 A;  5J50 A;  1M26 A;  1UGY C;  2GTY A;  3VZF A;  4R6Q A;  4WOG A;  1WS4 A;  2BMZ A;  1XXR A;  5AV7 A;  3LLY A;  3O44 A;  1ZGR A;  1ZGS A;  4AKB A;  2HYR A;  1X1V A;  1VMO A;  1J4T A;  1C3K A;  2GUX A;  3LM1 A;  3VY6 A;  4MQ0 A;  1C3M A;  2QP2 A;  4D8M A;  1W99 A;  3WOB A;  5J4T A;  4PIF A;  3TOW A;  4QX3 A;  3P8S A;  1TOQ A;  1UH1 A;  3VZG A;  1TP8 A;  4AKD A;  3LLZ A;  1JAC A;  4W8J A;  3VZE A;  1CIY A;  1WS5 C;  1KU8 A;  1I5P A;  1KUJ A;  3LL2 A;  5J51 A;  1UGY A;  1JOT A;  3LKY A;  2NUO A;  3MIV A;  5J4X A;  4DDN A;  2BMY A;  1J4U A;  4MOA A;  4PIT A;  1VBP A;  1UGW C;  2C9K A;  3WOC A;  3R52 A;  3AQG A;  2GUE A;  3LL0 A;  2BN0 A;  1WS5 A;  2GUD A;  3LL1 A;  1VBO A;  3R50 A;  1XXQ A;  4ARY A;  1OUW A;  4GX7 A;  4R6R A;  4PIK A;  4AK4 A;  5BN6 E;  1JI6 A;  2HYQ A;  4QX1 A;  4R6O A;  1XEZ A;  1UGW A;  1PXD A;  1UH0 A;  4QX2 A;  4ARX A;  4QX0 A;  3VY7 A;  2GUC A;  3EB7 A; 
#chains in the Genus database with same CATH homology
 1WS4 C;  5JM1 A;  4R6N A;  3MIT A;  4R6P A;  1C3N A;  5EXG A;  4AKC A;  3R51 A;  1J4S A;  1UGX A;  2NU5 A;  3APA A;  3MIU A;  4PIU A;  2JZ4 A;  5J50 A;  1M26 A;  1UGY C;  2GTY A;  3VZF A;  4R6Q A;  4WOG A;  1WS4 A;  2BMZ A;  1XXR A;  5AV7 A;  3LLY A;  3O44 A;  1ZGR A;  1ZGS A;  4AKB A;  2HYR A;  1X1V A;  1J4T A;  1C3K A;  2GUX A;  3LM1 A;  3VY6 A;  4MQ0 A;  1C3M A;  3WOB A;  5J4T A;  4PIF A;  3P8S A;  1TOQ A;  1UH1 A;  3VZG A;  1TP8 A;  4AKD A;  3LLZ A;  1JAC A;  3VZE A;  1WS5 C;  1KU8 A;  1KUJ A;  3LL2 A;  5J51 A;  1UGY A;  1JOT A;  3LKY A;  2NUO A;  3MIV A;  5J4X A;  4DDN A;  2BMY A;  1J4U A;  4PIT A;  1VBP A;  1UGW C;  3WOC A;  3R52 A;  3AQG A;  2GUE A;  3LL0 A;  2BN0 A;  1WS5 A;  2GUD A;  3LL1 A;  1VBO A;  3R50 A;  1XXQ A;  1OUW A;  4GX7 A;  4R6R A;  4PIK A;  4AK4 A;  5BN6 E;  2HYQ A;  4R6O A;  1XEZ A;  1UGW A;  1PXD A;  1UH0 A;  3VY7 A;  2GUC A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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3VZGA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations