3WOBA

Crystal structure of a prostate-specific wga16 glycoprotein lectin, form i
Total Genus 21
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
134
structure length
134
Chain Sequence
GQMFGNGKGSYFITSKDNETGITGIRVFVGPVGLIKSIQVRYGSSWSEKYGIPGGKAHELILHPGEHIISIYGRYRTFLQHVTLITNQGRSASFGLETGKGFFAAPNLTGQVLEGVYGQFWLYGITGIGFTWGF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Discovery, Primary, and Crystal Structures and Capacitation-related Properties of a Prostate-derived Heparin-binding Protein WGA16 from Boar Sperm
pubmed doi rcsb
molecule tags Unknown function
source organism Sus scrofa
molecule keywords hypothetical protein
total genus 21
structure length 134
sequence length 134
ec nomenclature
pdb deposition date 2013-12-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3wobA00
4R6PA 2BN0A 3LL0A 3WOBA 1UH1A 1VBOA 1JOTA 2JZ4A 5EXGA 4PIKA 4PITA 4AKCA 2BMYA 1WS5C 4AKBA 3VZEA 1M26A 4MQ0A 5J51A 1XXQA 4GX7A 3R51A 2HYRA 2NUOA 3R52A 3VZGA 1UH0A 3MIVA 5J50A 1WS4A 1J4UA 3O44A 1J4SA 5J4TA 1UGWA 4WOGA 1TP8A 4PIUA 3APAA 1JACA 3LL2A 4AK4A 4AKDA 2NU5A 2GUXA 1J4TA 2BMZA 1XEZA 1PXDA 2GUDA 1KU8A 3LM1A 2GUCA 4R6RA 5BN6E 1C3KA 2HYQA 3LLYA 3MITA 1WS5A 1UGXA 3LLZA 3LKYA 1KUJA 3LL1A 3P8SA 4R6QA 1C3MA 3VY6A 1UGYA 3WOCA 3MIUA 4R6OA 1VBPA 5JM1A 2GUEA 1X1VA 3AQGA 1WS4C 3R50A 3VZFA 1UGWC 1XXRA 4DDNA 4R6NA 5J4XA 2GTYA 1TOQA 1ZGSA 1C3NA 1ZGRA 5AV7A 1UGYC 3VY7A 4PIFA 1OUWA
chains in the Genus database with same CATH superfamily
2C9KA 4R6PA 4D8MA 2BN0A 3LL0A 4QX1A 3WOBA 1UH1A 1VBOA 1JOTA 3TOWA 2JZ4A 5EXGA 4PIKA 4PITA 4AKCA 2BMYA 1WS5C 4AKBA 3VZEA 1M26A 4MQ0A 4W8JA 5J51A 1XXQA 4GX7A 3R51A 2HYRA 2NUOA 3R52A 3VZGA 1UH0A 4MOAA 3MIVA 5J50A 1WS4A 1J4UA 3O44A 1J4SA 5J4TA 1UGWA 4WOGA 1TP8A 4PIUA 3APAA 1JACA 3LL2A 1VMOA 4AK4A 1I5PA 4AKDA 3EB7A 2NU5A 2GUXA 1J4TA 2BMZA 1XEZA 1PXDA 2GUDA 1KU8A 2QP2A 3LM1A 1JI6A 2GUCA 4R6RA 5BN6E 1C3KA 1DLCA 2HYQA 3LLYA 3MITA 1WS5A 1UGXA 4QX3A 3LLZA 3LKYA 4ARXA 1KUJA 3LL1A 4QX0A 3P8SA 4R6QA 1C3MA 3VY6A 1UGYA 3WOCA 3MIUA 4R6OA 1VBPA 5JM1A 2GUEA 1X1VA 3AQGA 4ARYA 1W99A 1WS4C 3R50A 3VZFA 1UGWC 1XXRA 4DDNA 4R6NA 5J4XA 2GTYA 1TOQA 1ZGSA 1CIYA 4QX2A 1C3NA 1ZGRA 5AV7A 1UGYC 3VY7A 4PIFA 1OUWA
chains in the Genus database with same CATH topology
4R6PA 2BN0A 3LL0A 3WOBA 1UH1A 1VBOA 1JOTA 2JZ4A 5EXGA 4PIKA 4PITA 4AKCA 2BMYA 1WS5C 4AKBA 3VZEA 1M26A 4MQ0A 5J51A 1XXQA 4GX7A 3R51A 2HYRA 2NUOA 3R52A 3VZGA 1UH0A 3MIVA 5J50A 1WS4A 1J4UA 3O44A 1J4SA 5J4TA 1UGWA 4WOGA 1TP8A 4PIUA 3APAA 1JACA 3LL2A 4AK4A 4AKDA 2NU5A 2GUXA 1J4TA 2BMZA 1XEZA 1PXDA 2GUDA 1KU8A 3LM1A 2GUCA 4R6RA 5BN6E 1C3KA 2HYQA 3LLYA 3MITA 1WS5A 1UGXA 3LLZA 3LKYA 1KUJA 3LL1A 3P8SA 4R6QA 1C3MA 3VY6A 1UGYA 3WOCA 3MIUA 4R6OA 1VBPA 5JM1A 2GUEA 1X1VA 3AQGA 1WS4C 3R50A 3VZFA 1UGWC 1XXRA 4DDNA 4R6NA 5J4XA 2GTYA 1TOQA 1ZGSA 1C3NA 1ZGRA 5AV7A 1UGYC 3VY7A 4PIFA 1OUWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4R6P A;  2BN0 A;  3LL0 A;  3WOB A;  1UH1 A;  1VBO A;  1JOT A;  2JZ4 A;  5EXG A;  4PIK A;  4PIT A;  4AKC A;  2BMY A;  1WS5 C;  4AKB A;  3VZE A;  1M26 A;  4MQ0 A;  5J51 A;  1XXQ A;  4GX7 A;  3R51 A;  2HYR A;  2NUO A;  3R52 A;  3VZG A;  1UH0 A;  3MIV A;  5J50 A;  1WS4 A;  1J4U A;  3O44 A;  1J4S A;  5J4T A;  1UGW A;  4WOG A;  1TP8 A;  4PIU A;  3APA A;  1JAC A;  3LL2 A;  4AK4 A;  4AKD A;  2NU5 A;  2GUX A;  1J4T A;  2BMZ A;  1XEZ A;  1PXD A;  2GUD A;  1KU8 A;  3LM1 A;  2GUC A;  4R6R A;  5BN6 E;  1C3K A;  2HYQ A;  3LLY A;  3MIT A;  1WS5 A;  1UGX A;  3LLZ A;  3LKY A;  1KUJ A;  3LL1 A;  3P8S A;  4R6Q A;  1C3M A;  3VY6 A;  1UGY A;  3WOC A;  3MIU A;  4R6O A;  1VBP A;  5JM1 A;  2GUE A;  1X1V A;  3AQG A;  1WS4 C;  3R50 A;  3VZF A;  1UGW C;  1XXR A;  4DDN A;  4R6N A;  5J4X A;  2GTY A;  1TOQ A;  1ZGS A;  1C3N A;  1ZGR A;  5AV7 A;  1UGY C;  3VY7 A;  4PIF A;  1OUW A; 
#chains in the Genus database with same CATH topology
 2C9K A;  4R6P A;  4D8M A;  2BN0 A;  3LL0 A;  4QX1 A;  3WOB A;  1UH1 A;  1VBO A;  1JOT A;  3TOW A;  2JZ4 A;  5EXG A;  4PIK A;  4PIT A;  4AKC A;  2BMY A;  1WS5 C;  4AKB A;  3VZE A;  1M26 A;  4MQ0 A;  4W8J A;  5J51 A;  1XXQ A;  4GX7 A;  3R51 A;  2HYR A;  2NUO A;  3R52 A;  3VZG A;  1UH0 A;  4MOA A;  3MIV A;  5J50 A;  1WS4 A;  1J4U A;  3O44 A;  1J4S A;  5J4T A;  1UGW A;  4WOG A;  1TP8 A;  4PIU A;  3APA A;  1JAC A;  3LL2 A;  1VMO A;  4AK4 A;  1I5P A;  4AKD A;  3EB7 A;  2NU5 A;  2GUX A;  1J4T A;  2BMZ A;  1XEZ A;  1PXD A;  2GUD A;  1KU8 A;  2QP2 A;  3LM1 A;  1JI6 A;  2GUC A;  4R6R A;  5BN6 E;  1C3K A;  1DLC A;  2HYQ A;  3LLY A;  3MIT A;  1WS5 A;  1UGX A;  4QX3 A;  3LLZ A;  3LKY A;  4ARX A;  1KUJ A;  3LL1 A;  4QX0 A;  3P8S A;  4R6Q A;  1C3M A;  3VY6 A;  1UGY A;  3WOC A;  3MIU A;  4R6O A;  1VBP A;  5JM1 A;  2GUE A;  1X1V A;  3AQG A;  4ARY A;  1W99 A;  1WS4 C;  3R50 A;  3VZF A;  1UGW C;  1XXR A;  4DDN A;  4R6N A;  5J4X A;  2GTY A;  1TOQ A;  1ZGS A;  1CIY A;  4QX2 A;  1C3N A;  1ZGR A;  5AV7 A;  1UGY C;  3VY7 A;  4PIF A;  1OUW A; 
#chains in the Genus database with same CATH homology
 4R6P A;  2BN0 A;  3LL0 A;  3WOB A;  1UH1 A;  1VBO A;  1JOT A;  2JZ4 A;  5EXG A;  4PIK A;  4PIT A;  4AKC A;  2BMY A;  1WS5 C;  4AKB A;  3VZE A;  1M26 A;  4MQ0 A;  5J51 A;  1XXQ A;  4GX7 A;  3R51 A;  2HYR A;  2NUO A;  3R52 A;  3VZG A;  1UH0 A;  3MIV A;  5J50 A;  1WS4 A;  1J4U A;  3O44 A;  1J4S A;  5J4T A;  1UGW A;  4WOG A;  1TP8 A;  4PIU A;  3APA A;  1JAC A;  3LL2 A;  4AK4 A;  4AKD A;  2NU5 A;  2GUX A;  1J4T A;  2BMZ A;  1XEZ A;  1PXD A;  2GUD A;  1KU8 A;  3LM1 A;  2GUC A;  4R6R A;  5BN6 E;  1C3K A;  2HYQ A;  3LLY A;  3MIT A;  1WS5 A;  1UGX A;  3LLZ A;  3LKY A;  1KUJ A;  3LL1 A;  3P8S A;  4R6Q A;  1C3M A;  3VY6 A;  1UGY A;  3WOC A;  3MIU A;  4R6O A;  1VBP A;  5JM1 A;  2GUE A;  1X1V A;  3AQG A;  1WS4 C;  3R50 A;  3VZF A;  1UGW C;  1XXR A;  4DDN A;  4R6N A;  5J4X A;  2GTY A;  1TOQ A;  1ZGS A;  1C3N A;  1ZGR A;  5AV7 A;  1UGY C;  3VY7 A;  4PIF A;  1OUW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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