3WOCA

Crystal structure of a prostate-specific wga16 glycoprotein lectin, form ii
Total Genus 20
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
20
sequence length
138
structure length
138
Chain Sequence
GSGQMFGNGKGSYFITSKDNETGITGIRVFVGPVGLIKSIQVRYGSSWSEKYGIPGGKAHELILHPGEHIISIYGRYRTFLQHVTLITNQGRSASFGLETGKGFFAAPNLTGQVLEGVYGQFWLYGITGIGFTWGFPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Discovery, Primary, and Crystal Structures and Capacitation-related Properties of a Prostate-derived Heparin-binding Protein WGA16 from Boar Sperm
pubmed doi rcsb
molecule tags Unknown function
source organism Sus scrofa
molecule keywords hypothetical protein
total genus 20
structure length 138
sequence length 138
chains with identical sequence B, C, D, E, F
ec nomenclature
pdb deposition date 2013-12-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 3wocA00
1KUJA 1J4TA 1WS5A 5J51A 4GX7A 1TOQA 3LL2A 1XXRA 1WS4A 3P8SA 3AQGA 1C3NA 3R52A 1UGYA 1VBPA 1TP8A 4PIFA 2BMYA 3R50A 5AV7A 4DDNA 3VZGA 1UH0A 4R6OA 3MIVA 4WOGA 4AKBA 2NU5A 1UGWA 2GUEA 1JOTA 3WOCA 2GUDA 2BN0A 3LL1A 3MIUA 5J50A 3LLZA 5J4XA 3WOBA 1M26A 1VBOA 5JM1A 1WS4C 4PIKA 1J4UA 2GUXA 1X1VA 1PXDA 2GTYA 2HYRA 1C3MA 1UGYC 1KU8A 4R6QA 4PIUA 4R6NA 4R6PA 1ZGRA 4MQ0A 1JACA 4AKDA 1XXQA 1WS5C 2GUCA 3LM1A 3VY6A 1UGWC 3LL0A 5EXGA 4AK4A 4R6RA 1ZGSA 3VZEA 3O44A 3LKYA 1XEZA 2JZ4A 3LLYA 3R51A 1OUWA 5J4TA 3VZFA 3VY7A 5BN6E 3MITA 1J4SA 3APAA 4AKCA 1UH1A 4PITA 2BMZA 1C3KA 2HYQA 2NUOA 1UGXA
chains in the Genus database with same CATH superfamily
1KUJA 1J4TA 1WS5A 5J51A 4GX7A 4W8JA 1TOQA 3LL2A 1XXRA 1WS4A 3P8SA 3AQGA 1C3NA 3R52A 1UGYA 1VBPA 1W99A 1TP8A 4PIFA 2BMYA 3R50A 5AV7A 4DDNA 3VZGA 1UH0A 4R6OA 3MIVA 4QX3A 3TOWA 4WOGA 4AKBA 2NU5A 1UGWA 2GUEA 1JOTA 3WOCA 2GUDA 2BN0A 3LL1A 3MIUA 5J50A 3LLZA 4ARXA 5J4XA 2C9KA 3WOBA 1I5PA 2QP2A 1M26A 1VBOA 5JM1A 1WS4C 4PIKA 1J4UA 2GUXA 1X1VA 1PXDA 2GTYA 2HYRA 1C3MA 1UGYC 1KU8A 4R6QA 4PIUA 4R6NA 4R6PA 1ZGRA 4MQ0A 1JACA 4AKDA 4D8MA 1XXQA 4MOAA 1WS5C 2GUCA 3LM1A 3VY6A 1UGWC 3LL0A 4QX2A 5EXGA 4QX1A 4AK4A 4R6RA 4ARYA 1ZGSA 3VZEA 3O44A 3LKYA 1XEZA 1JI6A 2JZ4A 3LLYA 3R51A 1CIYA 1OUWA 5J4TA 3VZFA 1DLCA 3VY7A 5BN6E 3MITA 1J4SA 3APAA 4AKCA 1UH1A 4PITA 2BMZA 1C3KA 1VMOA 2HYQA 3EB7A 2NUOA 1UGXA 4QX0A
chains in the Genus database with same CATH topology
1KUJA 1J4TA 1WS5A 5J51A 4GX7A 1TOQA 3LL2A 1XXRA 1WS4A 3P8SA 3AQGA 1C3NA 3R52A 1UGYA 1VBPA 1TP8A 4PIFA 2BMYA 3R50A 5AV7A 4DDNA 3VZGA 1UH0A 4R6OA 3MIVA 4WOGA 4AKBA 2NU5A 1UGWA 2GUEA 1JOTA 3WOCA 2GUDA 2BN0A 3LL1A 3MIUA 5J50A 3LLZA 5J4XA 3WOBA 1M26A 1VBOA 5JM1A 1WS4C 4PIKA 1J4UA 2GUXA 1X1VA 1PXDA 2GTYA 2HYRA 1C3MA 1UGYC 1KU8A 4R6QA 4PIUA 4R6NA 4R6PA 1ZGRA 4MQ0A 1JACA 4AKDA 1XXQA 1WS5C 2GUCA 3LM1A 3VY6A 1UGWC 3LL0A 5EXGA 4AK4A 4R6RA 1ZGSA 3VZEA 3O44A 3LKYA 1XEZA 2JZ4A 3LLYA 3R51A 1OUWA 5J4TA 3VZFA 3VY7A 5BN6E 3MITA 1J4SA 3APAA 4AKCA 1UH1A 4PITA 2BMZA 1C3KA 2HYQA 2NUOA 1UGXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KUJ A;  1J4T A;  1WS5 A;  5J51 A;  4GX7 A;  1TOQ A;  3LL2 A;  1XXR A;  1WS4 A;  3P8S A;  3AQG A;  1C3N A;  3R52 A;  1UGY A;  1VBP A;  1TP8 A;  4PIF A;  2BMY A;  3R50 A;  5AV7 A;  4DDN A;  3VZG A;  1UH0 A;  4R6O A;  3MIV A;  4WOG A;  4AKB A;  2NU5 A;  1UGW A;  2GUE A;  1JOT A;  3WOC A;  2GUD A;  2BN0 A;  3LL1 A;  3MIU A;  5J50 A;  3LLZ A;  5J4X A;  3WOB A;  1M26 A;  1VBO A;  5JM1 A;  1WS4 C;  4PIK A;  1J4U A;  2GUX A;  1X1V A;  1PXD A;  2GTY A;  2HYR A;  1C3M A;  1UGY C;  1KU8 A;  4R6Q A;  4PIU A;  4R6N A;  4R6P A;  1ZGR A;  4MQ0 A;  1JAC A;  4AKD A;  1XXQ A;  1WS5 C;  2GUC A;  3LM1 A;  3VY6 A;  1UGW C;  3LL0 A;  5EXG A;  4AK4 A;  4R6R A;  1ZGS A;  3VZE A;  3O44 A;  3LKY A;  1XEZ A;  2JZ4 A;  3LLY A;  3R51 A;  1OUW A;  5J4T A;  3VZF A;  3VY7 A;  5BN6 E;  3MIT A;  1J4S A;  3APA A;  4AKC A;  1UH1 A;  4PIT A;  2BMZ A;  1C3K A;  2HYQ A;  2NUO A;  1UGX A; 
#chains in the Genus database with same CATH topology
 1KUJ A;  1J4T A;  1WS5 A;  5J51 A;  4GX7 A;  4W8J A;  1TOQ A;  3LL2 A;  1XXR A;  1WS4 A;  3P8S A;  3AQG A;  1C3N A;  3R52 A;  1UGY A;  1VBP A;  1W99 A;  1TP8 A;  4PIF A;  2BMY A;  3R50 A;  5AV7 A;  4DDN A;  3VZG A;  1UH0 A;  4R6O A;  3MIV A;  4QX3 A;  3TOW A;  4WOG A;  4AKB A;  2NU5 A;  1UGW A;  2GUE A;  1JOT A;  3WOC A;  2GUD A;  2BN0 A;  3LL1 A;  3MIU A;  5J50 A;  3LLZ A;  4ARX A;  5J4X A;  2C9K A;  3WOB A;  1I5P A;  2QP2 A;  1M26 A;  1VBO A;  5JM1 A;  1WS4 C;  4PIK A;  1J4U A;  2GUX A;  1X1V A;  1PXD A;  2GTY A;  2HYR A;  1C3M A;  1UGY C;  1KU8 A;  4R6Q A;  4PIU A;  4R6N A;  4R6P A;  1ZGR A;  4MQ0 A;  1JAC A;  4AKD A;  4D8M A;  1XXQ A;  4MOA A;  1WS5 C;  2GUC A;  3LM1 A;  3VY6 A;  1UGW C;  3LL0 A;  4QX2 A;  5EXG A;  4QX1 A;  4AK4 A;  4R6R A;  4ARY A;  1ZGS A;  3VZE A;  3O44 A;  3LKY A;  1XEZ A;  1JI6 A;  2JZ4 A;  3LLY A;  3R51 A;  1CIY A;  1OUW A;  5J4T A;  3VZF A;  1DLC A;  3VY7 A;  5BN6 E;  3MIT A;  1J4S A;  3APA A;  4AKC A;  1UH1 A;  4PIT A;  2BMZ A;  1C3K A;  1VMO A;  2HYQ A;  3EB7 A;  2NUO A;  1UGX A;  4QX0 A; 
#chains in the Genus database with same CATH homology
 1KUJ A;  1J4T A;  1WS5 A;  5J51 A;  4GX7 A;  1TOQ A;  3LL2 A;  1XXR A;  1WS4 A;  3P8S A;  3AQG A;  1C3N A;  3R52 A;  1UGY A;  1VBP A;  1TP8 A;  4PIF A;  2BMY A;  3R50 A;  5AV7 A;  4DDN A;  3VZG A;  1UH0 A;  4R6O A;  3MIV A;  4WOG A;  4AKB A;  2NU5 A;  1UGW A;  2GUE A;  1JOT A;  3WOC A;  2GUD A;  2BN0 A;  3LL1 A;  3MIU A;  5J50 A;  3LLZ A;  5J4X A;  3WOB A;  1M26 A;  1VBO A;  5JM1 A;  1WS4 C;  4PIK A;  1J4U A;  2GUX A;  1X1V A;  1PXD A;  2GTY A;  2HYR A;  1C3M A;  1UGY C;  1KU8 A;  4R6Q A;  4PIU A;  4R6N A;  4R6P A;  1ZGR A;  4MQ0 A;  1JAC A;  4AKD A;  1XXQ A;  1WS5 C;  2GUC A;  3LM1 A;  3VY6 A;  1UGW C;  3LL0 A;  5EXG A;  4AK4 A;  4R6R A;  1ZGS A;  3VZE A;  3O44 A;  3LKY A;  1XEZ A;  2JZ4 A;  3LLY A;  3R51 A;  1OUW A;  5J4T A;  3VZF A;  3VY7 A;  5BN6 E;  3MIT A;  1J4S A;  3APA A;  4AKC A;  1UH1 A;  4PIT A;  2BMZ A;  1C3K A;  2HYQ A;  2NUO A;  1UGX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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