3WOC | Genus

Total Genus 20

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	20
sequence length	138
structure length	138
Chain Sequence	GSGQMFGNGKGSYFITSKDNETGITGIRVFVGPVGLIKSIQVRYGSSWSEKYGIPGGKAHELILHPGEHIISIYGRYRTFLQHVTLITNQGRSASFGLETGKGFFAAPNLTGQVLEGVYGQFWLYGITGIGFTWGFPR

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Unknown function
source organism	Sus scrofa
publication title	Discovery, Primary, and Crystal Structures and Capacitation-related Properties of a Prostate-derived Heparin-binding Protein WGA16 from Boar Sperm pubmed doi rcsb
molecule keywords	hypothetical protein
total genus	20
structure length	138
sequence length	138
chains with identical sequence	B, C, D, E, F
ec nomenclature
pdb deposition date	2013-12-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	3wocA00

4PIFA 3R50A 3MIUA 2BMZA 3LLYA 1OUWA 3LLZA 3MITA 1UGXA 5J50A 4R6RA 1J4SA 1J4TA 1UH0A 2HYQA 1XXQA 1ZGRA 1ZGSA 1X1VA 3VZGA 1C3NA 4R6OA 2GUCA 3WOCA 3AQGA 4AKDA 4MQ0A 1XXRA 5BN6E 4PIUA 4R6PA 4DDNA 2GUEA 3LL1A 2GUXA 3VZFA 2BN0A 2NU5A 1J4UA 4R6QA 5J51A 3WOBA 1JOTA 2GTYA 1VBOA 3VZEA 5AV7A 1KU8A 3LL0A 1PXDA 3MIVA 2GUDA 5EXGA 3LL2A 1UGYA 2NUOA 1C3KA 2BMYA 1JACA 1WS5A 5J4XA 4WOGA 3O44A 4R6NA 1XEZA 1UGYC 4GX7A 4AK4A 1TP8A 1VBPA 3R51A 3LKYA 3APAA 3VY6A 3LM1A 1WS5C 1UGWA 5JM1A 2HYRA 1TOQA 4PITA 3P8SA 4PIKA 3R52A 4AKBA 1KUJA 1UGWC 5J4TA 1WS4A 1C3MA 3VY7A 4AKCA 1UH1A 1M26A 2JZ4A 1WS4C
chains in the Genus database with same CATH superfamily

4PIFA 1DLCA 3R50A 4QX0A 3MIUA 2BMZA 3LLYA 1OUWA 3LLZA 3MITA 1UGXA 4R6RA 1J4SA 1J4TA 5J50A 2C9KA 1UH0A 4ARXA 2HYQA 4QX3A 1XXQA 1ZGRA 1ZGSA 1X1VA 3VZGA 1C3NA 4R6OA 2GUCA 4ARYA 3WOCA 3AQGA 4AKDA 4MQ0A 1XXRA 5BN6E 4PIUA 4R6PA 4DDNA 2GUEA 3LL1A 2GUXA 3VZFA 2BN0A 2NU5A 1J4UA 4R6QA 5J51A 3WOBA 1JOTA 2GTYA 1VBOA 3VZEA 5AV7A 1KU8A 4W8JA 3LL0A 1PXDA 4MOAA 3MIVA 2GUDA 5EXGA 3LL2A 4QX1A 1UGYA 2NUOA 1C3KA 2BMYA 1JACA 1CIYA 1I5PA 1WS5A 3EB7A 1VMOA 4QX2A 4WOGA 5J4XA 3O44A 4R6NA 1XEZA 1UGYC 4GX7A 4AK4A 1TP8A 1VBPA 3R51A 3LKYA 3APAA 3VY6A 3LM1A 1WS5C 1UGWA 5JM1A 2HYRA 1TOQA 4PITA 3P8SA 4PIKA 3TOWA 3R52A 4AKBA 1W99A 1JI6A 1KUJA 1UGWC 5J4TA 1WS4A 1C3MA 3VY7A 4AKCA 1UH1A 1M26A 2JZ4A 4D8MA 2QP2A 1WS4C
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4PIF A;  3R50 A;  3MIU A;  2BMZ A;  3LLY A;  1OUW A;  3LLZ A;  3MIT A;  1UGX A;  5J50 A;  4R6R A;  1J4S A;  1J4T A;  1UH0 A;  2HYQ A;  1XXQ A;  1ZGR A;  1ZGS A;  1X1V A;  3VZG A;  1C3N A;  4R6O A;  2GUC A;  3WOC A;  3AQG A;  4AKD A;  4MQ0 A;  1XXR A;  5BN6 E;  4PIU A;  4R6P A;  4DDN A;  2GUE A;  3LL1 A;  2GUX A;  3VZF A;  2BN0 A;  2NU5 A;  1J4U A;  4R6Q A;  5J51 A;  3WOB A;  1JOT A;  2GTY A;  1VBO A;  3VZE A;  5AV7 A;  1KU8 A;  3LL0 A;  1PXD A;  3MIV A;  2GUD A;  5EXG A;  3LL2 A;  1UGY A;  2NUO A;  1C3K A;  2BMY A;  1JAC A;  1WS5 A;  5J4X A;  4WOG A;  3O44 A;  4R6N A;  1XEZ A;  1UGY C;  4GX7 A;  4AK4 A;  1TP8 A;  1VBP A;  3R51 A;  3LKY A;  3APA A;  3VY6 A;  3LM1 A;  1WS5 C;  1UGW A;  5JM1 A;  2HYR A;  1TOQ A;  4PIT A;  3P8S A;  4PIK A;  3R52 A;  4AKB A;  1KUJ A;  1UGW C;  5J4T A;  1WS4 A;  1C3M A;  3VY7 A;  4AKC A;  1UH1 A;  1M26 A;  2JZ4 A;  1WS4 C; 
#chains in the Genus database with same CATH topology
 4PIF A;  1DLC A;  3R50 A;  4QX0 A;  3MIU A;  2BMZ A;  3LLY A;  1OUW A;  3LLZ A;  3MIT A;  1UGX A;  4R6R A;  1J4S A;  1J4T A;  5J50 A;  2C9K A;  1UH0 A;  4ARX A;  2HYQ A;  4QX3 A;  1XXQ A;  1ZGR A;  1ZGS A;  1X1V A;  3VZG A;  1C3N A;  4R6O A;  2GUC A;  4ARY A;  3WOC A;  3AQG A;  4AKD A;  4MQ0 A;  1XXR A;  5BN6 E;  4PIU A;  4R6P A;  4DDN A;  2GUE A;  3LL1 A;  2GUX A;  3VZF A;  2BN0 A;  2NU5 A;  1J4U A;  4R6Q A;  5J51 A;  3WOB A;  1JOT A;  2GTY A;  1VBO A;  3VZE A;  5AV7 A;  1KU8 A;  4W8J A;  3LL0 A;  1PXD A;  4MOA A;  3MIV A;  2GUD A;  5EXG A;  3LL2 A;  4QX1 A;  1UGY A;  2NUO A;  1C3K A;  2BMY A;  1JAC A;  1CIY A;  1I5P A;  1WS5 A;  3EB7 A;  1VMO A;  4QX2 A;  4WOG A;  5J4X A;  3O44 A;  4R6N A;  1XEZ A;  1UGY C;  4GX7 A;  4AK4 A;  1TP8 A;  1VBP A;  3R51 A;  3LKY A;  3APA A;  3VY6 A;  3LM1 A;  1WS5 C;  1UGW A;  5JM1 A;  2HYR A;  1TOQ A;  4PIT A;  3P8S A;  4PIK A;  3TOW A;  3R52 A;  4AKB A;  1W99 A;  1JI6 A;  1KUJ A;  1UGW C;  5J4T A;  1WS4 A;  1C3M A;  3VY7 A;  4AKC A;  1UH1 A;  1M26 A;  2JZ4 A;  4D8M A;  2QP2 A;  1WS4 C; 
#chains in the Genus database with same CATH homology
 4PIF A;  3R50 A;  3MIU A;  2BMZ A;  3LLY A;  1OUW A;  3LLZ A;  3MIT A;  1UGX A;  5J50 A;  4R6R A;  1J4S A;  1J4T A;  1UH0 A;  2HYQ A;  1XXQ A;  1ZGR A;  1ZGS A;  1X1V A;  3VZG A;  1C3N A;  4R6O A;  2GUC A;  3WOC A;  3AQG A;  4AKD A;  4MQ0 A;  1XXR A;  5BN6 E;  4PIU A;  4R6P A;  4DDN A;  2GUE A;  3LL1 A;  2GUX A;  3VZF A;  2BN0 A;  2NU5 A;  1J4U A;  4R6Q A;  5J51 A;  3WOB A;  1JOT A;  2GTY A;  1VBO A;  3VZE A;  5AV7 A;  1KU8 A;  3LL0 A;  1PXD A;  3MIV A;  2GUD A;  5EXG A;  3LL2 A;  1UGY A;  2NUO A;  1C3K A;  2BMY A;  1JAC A;  1WS5 A;  5J4X A;  4WOG A;  3O44 A;  4R6N A;  1XEZ A;  1UGY C;  4GX7 A;  4AK4 A;  1TP8 A;  1VBP A;  3R51 A;  3LKY A;  3APA A;  3VY6 A;  3LM1 A;  1WS5 C;  1UGW A;  5JM1 A;  2HYR A;  1TOQ A;  4PIT A;  3P8S A;  4PIK A;  3R52 A;  4AKB A;  1KUJ A;  1UGW C;  5J4T A;  1WS4 A;  1C3M A;  3VY7 A;  4AKC A;  1UH1 A;  1M26 A;  2JZ4 A;  1WS4 C;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3WOCA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations