4AKAA

Ipse alpha-1, an ige-binding crystallin
Total Genus 21

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
21
sequence length
106
structure length
106
Chain Sequence
GADSCKYCLQLYDETYERGSYIEVYKSVGSLSPPWTPGSVCVPFVNDTKRERPYWYLFDNVNYTGRITGLGHGTCIDDFTKSGFKGISSIKRCIQTKDGKVECINQ

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS4 (69-78)TIV1 (23-26)S6 (92-94)S1 (27-30)TII1 (89-92)S5 (82-89)TIV2 (30-33)TIV3 (32-35)TIV6 (76-79)S2 (39-42)TIV4 (49-52)TVIII1 (94-97)TIV5 (55-58)TIV7 (78-81)S3 (57-60)3H1 (97-99)Updating...
connected with : NaN
molecule tags Immune system
source organism Schistosoma mansoni
publication title A Crystallin Fold in the Interleukin-4-Inducing Principle of Schistosoma Mansoni Eggs (Ipse/Alpha-1) Mediates Ige Binding for Antigen-Independent Basophil Activation
pubmed doi rcsb
molecule keywords IL-4-INDUCING PROTEIN
total genus 21
structure length 106
sequence length 106
ec nomenclature
pdb deposition date 2012-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18258 IL4_i_Ig Interleukin-4 inducing immunoglobulin-binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.20.10 Mainly Beta Sandwich Gamma-B Crystallin; domain 1 Crystallins 4akaA00
4NI3A 1YTQA 1E7NA 4JGFA 1H4AX 2G98A 1GCSA 1M8UA 3IAJA 1A45A 1AG4A 3SO0A 1HDFA 2M3TA 3SO1A 3ENUA 1NPSA 2K1XA 3SNZA 1ZWMA 1DSLA 2M3CA 3HZ2A 3I9HA 3LWKA 1ELPA 1BLBA 1ZGTA 4W9BA 4EL6A 3SNYA 2M3UA 1HA4A 4FD9A 4W9AA 2K1WA 5HT8A 1YHPA 1A5DA 1OKIA 2BB2A 1GAMA 1BD7A 2JDGA 2KP5A 2V2UA 2KFBA 1A7HA 1I5IA 3CW3A 1PRSA 1HK0X 3QK3A 1ZIQA 4PSRA 1AMMA 4AKAA 2A5MA 4IAUA 1ZIRA 5HT9A 2JDFA 1ZWOA 2B1OA 3ENTA 2BV2A 2DADA 4PSPA 4GCRA 1ZIEA 1PRRA 4GR7A 3HZBA 2NBRA
chains in the Genus database with same CATH superfamily
1YTQA 1E7NA 4JGFA 1AG4A 3SNZA 3HZ2A 1BLBA 2M3UA 1HA4A 1YHPA 1A5DA 2KFBA 2BV2A 4PSPA 1BHUA 2NBRA 1F53A 3I9HA 1ELPA 1ZGTA 1GH5A 2K1WA 1G6EA 1BD7A 3UJZA 1HK0X 1AMMA 2A5MA 1ZIRA 2JDFA 3ENTA 2DADA 4GCRA 1ZIEA 1PRRA 4PSRA 4NI3A 1H4AX 1GCSA 1A45A 3SO0A 2M3TA 1NPSA 1ZWMA 2M3CA 3LWKA 4EL6A 4FD9A 2V2UA 2BB2A 1GAMA 2KP5A 1A7HA 1I5IA 4IAUA 1ZWOA 4GR7A 3HZBA 5HT8A 2G98A 1M8UA 3IAJA 1HDFA 3SO1A 3ENUA 2K1XA 1DSLA 4W9BA 1WKTA 3SNYA 4W9AA 1OKIA 2JDGA 3CW3A 1PRSA 3QK3A 1ZIQA 4AKAA 5HT9A 2B1OA 1C01A
chains in the Genus database with same CATH topology
4NI3A 1YTQA 1E7NA 4JGFA 1H4AX 2G98A 1GCSA 1M8UA 3IAJA 1A45A 1AG4A 3SO0A 1HDFA 2M3TA 3SO1A 3ENUA 1NPSA 2K1XA 3SNZA 1ZWMA 1DSLA 2M3CA 3HZ2A 3I9HA 3LWKA 1ELPA 1BLBA 1ZGTA 4W9BA 4EL6A 3SNYA 2M3UA 1HA4A 4FD9A 4W9AA 2K1WA 5HT8A 1YHPA 1A5DA 1OKIA 2BB2A 1GAMA 1BD7A 2JDGA 2KP5A 2V2UA 2KFBA 1A7HA 1I5IA 3CW3A 1PRSA 1HK0X 3QK3A 1ZIQA 4PSRA 1AMMA 4AKAA 2A5MA 4IAUA 1ZIRA 5HT9A 2JDFA 1ZWOA 2B1OA 3ENTA 2BV2A 2DADA 4PSPA 4GCRA 1ZIEA 1PRRA 4GR7A 3HZBA 2NBRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4NI3 A;  1YTQ A;  1E7N A;  4JGF A;  1H4A X;  2G98 A;  1GCS A;  1M8U A;  3IAJ A;  1A45 A;  1AG4 A;  3SO0 A;  1HDF A;  2M3T A;  3SO1 A;  3ENU A;  1NPS A;  2K1X A;  3SNZ A;  1ZWM A;  1DSL A;  2M3C A;  3HZ2 A;  3I9H A;  3LWK A;  1ELP A;  1BLB A;  1ZGT A;  4W9B A;  4EL6 A;  3SNY A;  2M3U A;  1HA4 A;  4FD9 A;  4W9A A;  2K1W A;  5HT8 A;  1YHP A;  1A5D A;  1OKI A;  2BB2 A;  1GAM A;  1BD7 A;  2JDG A;  2KP5 A;  2V2U A;  2KFB A;  1A7H A;  1I5I A;  3CW3 A;  1PRS A;  1HK0 X;  3QK3 A;  1ZIQ A;  4PSR A;  1AMM A;  4AKA A;  2A5M A;  4IAU A;  1ZIR A;  5HT9 A;  2JDF A;  1ZWO A;  2B1O A;  3ENT A;  2BV2 A;  2DAD A;  4PSP A;  4GCR A;  1ZIE A;  1PRR A;  4GR7 A;  3HZB A;  2NBR A; 
#chains in the Genus database with same CATH topology
 1YTQ A;  1E7N A;  4JGF A;  1AG4 A;  3SNZ A;  3HZ2 A;  1BLB A;  2M3U A;  1HA4 A;  1YHP A;  1A5D A;  2KFB A;  2BV2 A;  4PSP A;  1BHU A;  2NBR A;  1F53 A;  3I9H A;  1ELP A;  1ZGT A;  1GH5 A;  2K1W A;  1G6E A;  1BD7 A;  3UJZ A;  1HK0 X;  1AMM A;  2A5M A;  1ZIR A;  2JDF A;  3ENT A;  2DAD A;  4GCR A;  1ZIE A;  1PRR A;  4PSR A;  4NI3 A;  1H4A X;  1GCS A;  1A45 A;  3SO0 A;  2M3T A;  1NPS A;  1ZWM A;  2M3C A;  3LWK A;  4EL6 A;  4FD9 A;  2V2U A;  2BB2 A;  1GAM A;  2KP5 A;  1A7H A;  1I5I A;  4IAU A;  1ZWO A;  4GR7 A;  3HZB A;  5HT8 A;  2G98 A;  1M8U A;  3IAJ A;  1HDF A;  3SO1 A;  3ENU A;  2K1X A;  1DSL A;  4W9B A;  1WKT A;  3SNY A;  4W9A A;  1OKI A;  2JDG A;  3CW3 A;  1PRS A;  3QK3 A;  1ZIQ A;  4AKA A;  5HT9 A;  2B1O A;  1C01 A; 
#chains in the Genus database with same CATH homology
 4NI3 A;  1YTQ A;  1E7N A;  4JGF A;  1H4A X;  2G98 A;  1GCS A;  1M8U A;  3IAJ A;  1A45 A;  1AG4 A;  3SO0 A;  1HDF A;  2M3T A;  3SO1 A;  3ENU A;  1NPS A;  2K1X A;  3SNZ A;  1ZWM A;  1DSL A;  2M3C A;  3HZ2 A;  3I9H A;  3LWK A;  1ELP A;  1BLB A;  1ZGT A;  4W9B A;  4EL6 A;  3SNY A;  2M3U A;  1HA4 A;  4FD9 A;  4W9A A;  2K1W A;  5HT8 A;  1YHP A;  1A5D A;  1OKI A;  2BB2 A;  1GAM A;  1BD7 A;  2JDG A;  2KP5 A;  2V2U A;  2KFB A;  1A7H A;  1I5I A;  3CW3 A;  1PRS A;  1HK0 X;  3QK3 A;  1ZIQ A;  4PSR A;  1AMM A;  4AKA A;  2A5M A;  4IAU A;  1ZIR A;  5HT9 A;  2JDF A;  1ZWO A;  2B1O A;  3ENT A;  2BV2 A;  2DAD A;  4PSP A;  4GCR A;  1ZIE A;  1PRR A;  4GR7 A;  3HZB A;  2NBR A; 
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