4AKBA

Structure of galactose binding lectin from champedak (cgb) with galactose
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGENHKSFITGFTPVKISLDFPSEYIMEVSGYTGKVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFSLPIENGLIVGFKGSIGYWLDYFSMYLSL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures and Binding Specificity of Galactose- and Mannose-Binding Lectins from Champedak: Differences from Jackfruit Lectins
pubmed doi rcsb
molecule tags Sugar binding protein
molecule keywords AGGLUTININ ALPHA CHAIN
total genus 30
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2012-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 4akbA00
4AKBA 2HYRA 1XXQA 5EXGA 3O44A 3LL2A 2BN0A 1WS5A 3VY7A 1C3MA 3LL1A 2GUEA 3APAA 4R6OA 4R6PA 1J4UA 1UGYA 2NUOA 3LM1A 3MIUA 4AKDA 4PIKA 1UGXA 1X1VA 3WOCA 1VBPA 1C3NA 5J51A 1TP8A 3VZFA 3LL0A 2NU5A 4DDNA 2GTYA 3R50A 1WS4C 4PIUA 4PITA 1M26A 1VBOA 3R52A 2BMYA 4GX7A 4AKCA 4MQ0A 2JZ4A 1UGYC 2GUCA 3LLZA 1ZGSA 3VY6A 3LKYA 4R6NA 2GUDA 5J4TA 5J4XA 1TOQA 1UGWC 1XEZA 3MIVA 5JM1A 3VZGA 2HYQA 1UH0A 1XXRA 4PIFA 1WS5C 3R51A 4WOGA 3MITA 1OUWA 1JOTA 1KU8A 1PXDA 5J50A 4AK4A 1UH1A 1KUJA 1JACA 2BMZA 1WS4A 5AV7A 3P8SA 1ZGRA 3WOBA 1J4SA 3AQGA 5BN6E 2GUXA 1C3KA 3VZEA 4R6QA 1J4TA 4R6RA 3LLYA 1UGWA
chains in the Genus database with same CATH superfamily
4AKBA 2HYRA 1XXQA 5EXGA 3O44A 3LL2A 2BN0A 1WS5A 3VY7A 1C3MA 3LL1A 2GUEA 3APAA 4R6OA 1VMOA 4QX0A 4R6PA 1J4UA 1UGYA 2NUOA 3LM1A 3MIUA 4AKDA 4PIKA 1UGXA 1DLCA 1I5PA 4MOAA 1X1VA 3WOCA 2C9KA 1VBPA 1C3NA 3EB7A 5J51A 1TP8A 4QX2A 3VZFA 3LL0A 2NU5A 4DDNA 2GTYA 3R50A 1WS4C 4PIUA 4PITA 1M26A 1VBOA 3R52A 4QX3A 1JI6A 2BMYA 4GX7A 4AKCA 4MQ0A 2JZ4A 4ARXA 2GUCA 3TOWA 1UGYC 4QX1A 3LLZA 1W99A 1CIYA 1ZGSA 3VY6A 3LKYA 4R6NA 2GUDA 5J4TA 5J4XA 1TOQA 1UGWC 1XEZA 3MIVA 5JM1A 3VZGA 2HYQA 2QP2A 1UH0A 1XXRA 4PIFA 1WS5C 3R51A 4WOGA 3MITA 1OUWA 1JOTA 4D8MA 1KU8A 1PXDA 5J50A 4AK4A 1UH1A 1KUJA 1JACA 2BMZA 1WS4A 5AV7A 3P8SA 1ZGRA 3WOBA 1J4SA 3AQGA 4ARYA 5BN6E 2GUXA 4W8JA 1C3KA 3VZEA 4R6QA 1J4TA 4R6RA 3LLYA 1UGWA
chains in the Genus database with same CATH topology
4AKBA 2HYRA 1XXQA 5EXGA 3O44A 3LL2A 2BN0A 1WS5A 3VY7A 1C3MA 3LL1A 2GUEA 3APAA 4R6OA 4R6PA 1J4UA 1UGYA 2NUOA 3LM1A 3MIUA 4AKDA 4PIKA 1UGXA 1X1VA 3WOCA 1VBPA 1C3NA 5J51A 1TP8A 3VZFA 3LL0A 2NU5A 4DDNA 2GTYA 3R50A 1WS4C 4PIUA 4PITA 1M26A 1VBOA 3R52A 2BMYA 4GX7A 4AKCA 4MQ0A 2JZ4A 1UGYC 2GUCA 3LLZA 1ZGSA 3VY6A 3LKYA 4R6NA 2GUDA 5J4TA 5J4XA 1TOQA 1UGWC 1XEZA 3MIVA 5JM1A 3VZGA 2HYQA 1UH0A 1XXRA 4PIFA 1WS5C 3R51A 4WOGA 3MITA 1OUWA 1JOTA 1KU8A 1PXDA 5J50A 4AK4A 1UH1A 1KUJA 1JACA 2BMZA 1WS4A 5AV7A 3P8SA 1ZGRA 3WOBA 1J4SA 3AQGA 5BN6E 2GUXA 1C3KA 3VZEA 4R6QA 1J4TA 4R6RA 3LLYA 1UGWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AKB A;  2HYR A;  1XXQ A;  5EXG A;  3O44 A;  3LL2 A;  2BN0 A;  1WS5 A;  3VY7 A;  1C3M A;  3LL1 A;  2GUE A;  3APA A;  4R6O A;  4R6P A;  1J4U A;  1UGY A;  2NUO A;  3LM1 A;  3MIU A;  4AKD A;  4PIK A;  1UGX A;  1X1V A;  3WOC A;  1VBP A;  1C3N A;  5J51 A;  1TP8 A;  3VZF A;  3LL0 A;  2NU5 A;  4DDN A;  2GTY A;  3R50 A;  1WS4 C;  4PIU A;  4PIT A;  1M26 A;  1VBO A;  3R52 A;  2BMY A;  4GX7 A;  4AKC A;  4MQ0 A;  2JZ4 A;  1UGY C;  2GUC A;  3LLZ A;  1ZGS A;  3VY6 A;  3LKY A;  4R6N A;  2GUD A;  5J4T A;  5J4X A;  1TOQ A;  1UGW C;  1XEZ A;  3MIV A;  5JM1 A;  3VZG A;  2HYQ A;  1UH0 A;  1XXR A;  4PIF A;  1WS5 C;  3R51 A;  4WOG A;  3MIT A;  1OUW A;  1JOT A;  1KU8 A;  1PXD A;  5J50 A;  4AK4 A;  1UH1 A;  1KUJ A;  1JAC A;  2BMZ A;  1WS4 A;  5AV7 A;  3P8S A;  1ZGR A;  3WOB A;  1J4S A;  3AQG A;  5BN6 E;  2GUX A;  1C3K A;  3VZE A;  4R6Q A;  1J4T A;  4R6R A;  3LLY A;  1UGW A; 
#chains in the Genus database with same CATH topology
 4AKB A;  2HYR A;  1XXQ A;  5EXG A;  3O44 A;  3LL2 A;  2BN0 A;  1WS5 A;  3VY7 A;  1C3M A;  3LL1 A;  2GUE A;  3APA A;  4R6O A;  1VMO A;  4QX0 A;  4R6P A;  1J4U A;  1UGY A;  2NUO A;  3LM1 A;  3MIU A;  4AKD A;  4PIK A;  1UGX A;  1DLC A;  1I5P A;  4MOA A;  1X1V A;  3WOC A;  2C9K A;  1VBP A;  1C3N A;  3EB7 A;  5J51 A;  1TP8 A;  4QX2 A;  3VZF A;  3LL0 A;  2NU5 A;  4DDN A;  2GTY A;  3R50 A;  1WS4 C;  4PIU A;  4PIT A;  1M26 A;  1VBO A;  3R52 A;  4QX3 A;  1JI6 A;  2BMY A;  4GX7 A;  4AKC A;  4MQ0 A;  2JZ4 A;  4ARX A;  2GUC A;  3TOW A;  1UGY C;  4QX1 A;  3LLZ A;  1W99 A;  1CIY A;  1ZGS A;  3VY6 A;  3LKY A;  4R6N A;  2GUD A;  5J4T A;  5J4X A;  1TOQ A;  1UGW C;  1XEZ A;  3MIV A;  5JM1 A;  3VZG A;  2HYQ A;  2QP2 A;  1UH0 A;  1XXR A;  4PIF A;  1WS5 C;  3R51 A;  4WOG A;  3MIT A;  1OUW A;  1JOT A;  4D8M A;  1KU8 A;  1PXD A;  5J50 A;  4AK4 A;  1UH1 A;  1KUJ A;  1JAC A;  2BMZ A;  1WS4 A;  5AV7 A;  3P8S A;  1ZGR A;  3WOB A;  1J4S A;  3AQG A;  4ARY A;  5BN6 E;  2GUX A;  4W8J A;  1C3K A;  3VZE A;  4R6Q A;  1J4T A;  4R6R A;  3LLY A;  1UGW A; 
#chains in the Genus database with same CATH homology
 4AKB A;  2HYR A;  1XXQ A;  5EXG A;  3O44 A;  3LL2 A;  2BN0 A;  1WS5 A;  3VY7 A;  1C3M A;  3LL1 A;  2GUE A;  3APA A;  4R6O A;  4R6P A;  1J4U A;  1UGY A;  2NUO A;  3LM1 A;  3MIU A;  4AKD A;  4PIK A;  1UGX A;  1X1V A;  3WOC A;  1VBP A;  1C3N A;  5J51 A;  1TP8 A;  3VZF A;  3LL0 A;  2NU5 A;  4DDN A;  2GTY A;  3R50 A;  1WS4 C;  4PIU A;  4PIT A;  1M26 A;  1VBO A;  3R52 A;  2BMY A;  4GX7 A;  4AKC A;  4MQ0 A;  2JZ4 A;  1UGY C;  2GUC A;  3LLZ A;  1ZGS A;  3VY6 A;  3LKY A;  4R6N A;  2GUD A;  5J4T A;  5J4X A;  1TOQ A;  1UGW C;  1XEZ A;  3MIV A;  5JM1 A;  3VZG A;  2HYQ A;  1UH0 A;  1XXR A;  4PIF A;  1WS5 C;  3R51 A;  4WOG A;  3MIT A;  1OUW A;  1JOT A;  1KU8 A;  1PXD A;  5J50 A;  4AK4 A;  1UH1 A;  1KUJ A;  1JAC A;  2BMZ A;  1WS4 A;  5AV7 A;  3P8S A;  1ZGR A;  3WOB A;  1J4S A;  3AQG A;  5BN6 E;  2GUX A;  1C3K A;  3VZE A;  4R6Q A;  1J4T A;  4R6R A;  3LLY A;  1UGW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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