4AKCA

Structure of galactose binding lectin from champedak (cgb) with gal(beta)1,3-galnac
Total Genus 29

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
133
structure length
133
Chain Sequence
GKAFDDGAFTGIREINLSYNKETAIGDFQVVYDLNGSPYVGENHKSFITGFTPVKISLDFPSEYIMEVSGYTGKVSGYVVVRSLTFKTNKKTYGPYGVTSGTPFSLPIENGLIVGFKGSIGYWLDYFSMYLSL

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S1 (2-5)EMPTYS11 (124-132)S4 (37-44)TIV1 (33-36)S2 (11-19)TI1 (20-23)S7 (78-88)S3 (25-34)TIV2 (46-49)S10 (112-120)TVIa1 (59-62)TI2 (60-63)TIV4 (88-91)S8 (92-97)TVIII1 (61-64)S6 (65-75)TVIII2 (108-111)TIV5 (120-123)S5 (52-57)S9 (102-107)Updating...
connected with : NaN
molecule tags Sugar binding protein
publication title Structures and Binding Specificity of Galactose- and Mannose-Binding Lectins from Champedak: Differences from Jackfruit Lectins
pubmed doi rcsb
molecule keywords AGGLUTININ ALPHA CHAIN
total genus 29
structure length 133
sequence length 133
chains with identical sequence C, E, G
ec nomenclature
pdb deposition date 2012-02-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01419 Jacalin Jacalin-like lectin domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.30 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Jacalin-like lectin domain 4akcA00
5J51A 1WS4A 1VBPA 3WOBA 3MIUA 4AK4A 4AKDA 4AKCA 3LLZA 5AV7A 3LLYA 3APAA 4R6QA 4WOGA 1C3KA 2HYRA 2HYQA 2GUCA 1TOQA 1UH1A 4PIUA 4AKBA 1WS5A 1ZGRA 2GUDA 1VBOA 3LKYA 1C3NA 1UGXA 4DDNA 1UGYA 4MQ0A 1UGWA 1JOTA 3VY6A 5EXGA 3LL0A 1UH0A 3O44A 4PITA 2BMYA 2BN0A 5JM1A 1KU8A 4R6PA 5BN6E 4PIFA 3R50A 5J4TA 5J50A 1XXQA 1XEZA 1J4TA 3LM1A 4GX7A 3R51A 2GUEA 3VZEA 2GTYA 3LL1A 3VZGA 1JACA 3VZFA 3R52A 2NUOA 1X1VA 5J4XA 1XXRA 1WS5C 2BMZA 1C3MA 1WS4C 1J4UA 1PXDA 1UGYC 1UGWC 4R6NA 3WOCA 3LL2A 1TP8A 1M26A 2GUXA 3MITA 2JZ4A 1ZGSA 3AQGA 1J4SA 1OUWA 3VY7A 3MIVA 3P8SA 4R6RA 1KUJA 4R6OA 4PIKA 2NU5A
chains in the Genus database with same CATH superfamily
5J51A 1I5PA 4QX1A 1WS4A 1VBPA 3WOBA 3MIUA 4AK4A 4AKDA 1JI6A 4AKCA 3LLZA 4QX2A 4QX3A 5AV7A 3LLYA 4W8JA 3APAA 4R6QA 4WOGA 4ARXA 1C3KA 2HYRA 2HYQA 4ARYA 2GUCA 1TOQA 1UH1A 4PIUA 4AKBA 1WS5A 1ZGRA 2GUDA 1VBOA 3LKYA 1C3NA 2QP2A 1CIYA 1UGXA 4DDNA 1UGYA 4MQ0A 1UGWA 1JOTA 1VMOA 3VY6A 5EXGA 3LL0A 3TOWA 1UH0A 4D8MA 3O44A 4PITA 2BMYA 2BN0A 5JM1A 1KU8A 4R6PA 3EB7A 5BN6E 4PIFA 3R50A 2C9KA 5J4TA 5J50A 1XXQA 1XEZA 1J4TA 3LM1A 4GX7A 3R51A 2GUEA 3VZEA 2GTYA 3LL1A 3VZGA 1JACA 3VZFA 3R52A 2NUOA 1X1VA 5J4XA 1XXRA 1WS5C 2BMZA 4MOAA 1C3MA 1W99A 1WS4C 1J4UA 1PXDA 1UGYC 1UGWC 4R6NA 3WOCA 3LL2A 1TP8A 1M26A 2GUXA 3MITA 1DLCA 2JZ4A 1ZGSA 3AQGA 1J4SA 1OUWA 3VY7A 3MIVA 3P8SA 4QX0A 4R6RA 1KUJA 4R6OA 4PIKA 2NU5A
chains in the Genus database with same CATH topology
5J51A 1WS4A 1VBPA 3WOBA 3MIUA 4AK4A 4AKDA 4AKCA 3LLZA 5AV7A 3LLYA 3APAA 4R6QA 4WOGA 1C3KA 2HYRA 2HYQA 2GUCA 1TOQA 1UH1A 4PIUA 4AKBA 1WS5A 1ZGRA 2GUDA 1VBOA 3LKYA 1C3NA 1UGXA 4DDNA 1UGYA 4MQ0A 1UGWA 1JOTA 3VY6A 5EXGA 3LL0A 1UH0A 3O44A 4PITA 2BMYA 2BN0A 5JM1A 1KU8A 4R6PA 5BN6E 4PIFA 3R50A 5J4TA 5J50A 1XXQA 1XEZA 1J4TA 3LM1A 4GX7A 3R51A 2GUEA 3VZEA 2GTYA 3LL1A 3VZGA 1JACA 3VZFA 3R52A 2NUOA 1X1VA 5J4XA 1XXRA 1WS5C 2BMZA 1C3MA 1WS4C 1J4UA 1PXDA 1UGYC 1UGWC 4R6NA 3WOCA 3LL2A 1TP8A 1M26A 2GUXA 3MITA 2JZ4A 1ZGSA 3AQGA 1J4SA 1OUWA 3VY7A 3MIVA 3P8SA 4R6RA 1KUJA 4R6OA 4PIKA 2NU5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5J51 A;  1WS4 A;  1VBP A;  3WOB A;  3MIU A;  4AK4 A;  4AKD A;  4AKC A;  3LLZ A;  5AV7 A;  3LLY A;  3APA A;  4R6Q A;  4WOG A;  1C3K A;  2HYR A;  2HYQ A;  2GUC A;  1TOQ A;  1UH1 A;  4PIU A;  4AKB A;  1WS5 A;  1ZGR A;  2GUD A;  1VBO A;  3LKY A;  1C3N A;  1UGX A;  4DDN A;  1UGY A;  4MQ0 A;  1UGW A;  1JOT A;  3VY6 A;  5EXG A;  3LL0 A;  1UH0 A;  3O44 A;  4PIT A;  2BMY A;  2BN0 A;  5JM1 A;  1KU8 A;  4R6P A;  5BN6 E;  4PIF A;  3R50 A;  5J4T A;  5J50 A;  1XXQ A;  1XEZ A;  1J4T A;  3LM1 A;  4GX7 A;  3R51 A;  2GUE A;  3VZE A;  2GTY A;  3LL1 A;  3VZG A;  1JAC A;  3VZF A;  3R52 A;  2NUO A;  1X1V A;  5J4X A;  1XXR A;  1WS5 C;  2BMZ A;  1C3M A;  1WS4 C;  1J4U A;  1PXD A;  1UGY C;  1UGW C;  4R6N A;  3WOC A;  3LL2 A;  1TP8 A;  1M26 A;  2GUX A;  3MIT A;  2JZ4 A;  1ZGS A;  3AQG A;  1J4S A;  1OUW A;  3VY7 A;  3MIV A;  3P8S A;  4R6R A;  1KUJ A;  4R6O A;  4PIK A;  2NU5 A; 
#chains in the Genus database with same CATH topology
 5J51 A;  1I5P A;  4QX1 A;  1WS4 A;  1VBP A;  3WOB A;  3MIU A;  4AK4 A;  4AKD A;  1JI6 A;  4AKC A;  3LLZ A;  4QX2 A;  4QX3 A;  5AV7 A;  3LLY A;  4W8J A;  3APA A;  4R6Q A;  4WOG A;  4ARX A;  1C3K A;  2HYR A;  2HYQ A;  4ARY A;  2GUC A;  1TOQ A;  1UH1 A;  4PIU A;  4AKB A;  1WS5 A;  1ZGR A;  2GUD A;  1VBO A;  3LKY A;  1C3N A;  2QP2 A;  1CIY A;  1UGX A;  4DDN A;  1UGY A;  4MQ0 A;  1UGW A;  1JOT A;  1VMO A;  3VY6 A;  5EXG A;  3LL0 A;  3TOW A;  1UH0 A;  4D8M A;  3O44 A;  4PIT A;  2BMY A;  2BN0 A;  5JM1 A;  1KU8 A;  4R6P A;  3EB7 A;  5BN6 E;  4PIF A;  3R50 A;  2C9K A;  5J4T A;  5J50 A;  1XXQ A;  1XEZ A;  1J4T A;  3LM1 A;  4GX7 A;  3R51 A;  2GUE A;  3VZE A;  2GTY A;  3LL1 A;  3VZG A;  1JAC A;  3VZF A;  3R52 A;  2NUO A;  1X1V A;  5J4X A;  1XXR A;  1WS5 C;  2BMZ A;  4MOA A;  1C3M A;  1W99 A;  1WS4 C;  1J4U A;  1PXD A;  1UGY C;  1UGW C;  4R6N A;  3WOC A;  3LL2 A;  1TP8 A;  1M26 A;  2GUX A;  3MIT A;  1DLC A;  2JZ4 A;  1ZGS A;  3AQG A;  1J4S A;  1OUW A;  3VY7 A;  3MIV A;  3P8S A;  4QX0 A;  4R6R A;  1KUJ A;  4R6O A;  4PIK A;  2NU5 A; 
#chains in the Genus database with same CATH homology
 5J51 A;  1WS4 A;  1VBP A;  3WOB A;  3MIU A;  4AK4 A;  4AKD A;  4AKC A;  3LLZ A;  5AV7 A;  3LLY A;  3APA A;  4R6Q A;  4WOG A;  1C3K A;  2HYR A;  2HYQ A;  2GUC A;  1TOQ A;  1UH1 A;  4PIU A;  4AKB A;  1WS5 A;  1ZGR A;  2GUD A;  1VBO A;  3LKY A;  1C3N A;  1UGX A;  4DDN A;  1UGY A;  4MQ0 A;  1UGW A;  1JOT A;  3VY6 A;  5EXG A;  3LL0 A;  1UH0 A;  3O44 A;  4PIT A;  2BMY A;  2BN0 A;  5JM1 A;  1KU8 A;  4R6P A;  5BN6 E;  4PIF A;  3R50 A;  5J4T A;  5J50 A;  1XXQ A;  1XEZ A;  1J4T A;  3LM1 A;  4GX7 A;  3R51 A;  2GUE A;  3VZE A;  2GTY A;  3LL1 A;  3VZG A;  1JAC A;  3VZF A;  3R52 A;  2NUO A;  1X1V A;  5J4X A;  1XXR A;  1WS5 C;  2BMZ A;  1C3M A;  1WS4 C;  1J4U A;  1PXD A;  1UGY C;  1UGW C;  4R6N A;  3WOC A;  3LL2 A;  1TP8 A;  1M26 A;  2GUX A;  3MIT A;  2JZ4 A;  1ZGS A;  3AQG A;  1J4S A;  1OUW A;  3VY7 A;  3MIV A;  3P8S A;  4R6R A;  1KUJ A;  4R6O A;  4PIK A;  2NU5 A; 
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