4AKD | Genus

Total Genus 30

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	30
sequence length	150
structure length	150
Chain Sequence	MASQTITVGPWGGSGGNGWDDGSYTGIRQIELSYKEAIGSFCVIYDLNGESFPGPKHTSKLPYKNVKIELQFPEEFLVSVSGYTGPFSALATPTPVVRSLTFKTNKGRTFGPYGDEEGTYFNLPIENGLIVGFKGRTGDLLDAIGVHMAL

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Sugar binding protein
publication title	Structures and Binding Specificity of Galactose- and Mannose-Binding Lectins from Champedak: Differences from Jackfruit Lectins pubmed doi rcsb
molecule keywords	MANNOSE-SPECIFIC LECTIN KM+
total genus	30
structure length	150
sequence length	150
chains with identical sequence	B, C, D
ec nomenclature
pdb deposition date	2012-02-22

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF01419	Jacalin	Jacalin-like lectin domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	4akdA00

3LL2A 3AQGA 1C3NA 1UGYA 1UH0A 4AK4A 3R51A 1JOTA 1TOQA 3LKYA 1J4UA 3O44A 1WS5C 3LLYA 3R52A 4AKBA 2HYRA 3LL1A 5BN6E 4PIFA 5J4TA 4MQ0A 5AV7A 2GUDA 1VBOA 1J4TA 1JACA 3WOCA 4R6RA 5JM1A 1XXRA 4DDNA 4R6NA 5EXGA 2GUXA 3LLZA 2GTYA 1WS5A 3VZEA 3VZFA 4R6PA 3VY7A 1VBPA 1XEZA 2NUOA 1OUWA 3LL0A 5J4XA 2GUCA 3R50A 1C3MA 3MIVA 1UGXA 3LM1A 4AKDA 1M26A 1PXDA 3VY6A 4WOGA 2BMYA 1KU8A 2BN0A 3MITA 1TP8A 1X1VA 1ZGSA 1UGWA 1UGWC 1XXQA 1J4SA 2BMZA 5J50A 5J51A 2JZ4A 1UGYC 1UH1A 3WOBA 4AKCA 1C3KA 4PITA 4R6OA 3MIUA 1ZGRA 3APAA 1KUJA 3VZGA 2GUEA 4PIUA 2HYQA 4GX7A 1WS4A 1WS4C 4R6QA 3P8SA 2NU5A 4PIKA
chains in the Genus database with same CATH superfamily

3LL2A 3AQGA 1C3NA 1W99A 1UGYA 1UH0A 4AK4A 4MOAA 3R51A 4QX2A 1JOTA 1TOQA 3LKYA 1J4UA 3O44A 1WS5C 3LLYA 3R52A 4AKBA 2HYRA 3LL1A 5BN6E 4PIFA 5J4TA 4MQ0A 5AV7A 2GUDA 1VBOA 4QX3A 1J4TA 1JACA 3WOCA 4R6RA 4ARXA 5JM1A 4QX1A 1XXRA 4DDNA 4R6NA 5EXGA 4D8MA 2GUXA 3LLZA 2GTYA 1DLCA 1WS5A 4QX0A 3VZEA 3VZFA 4R6PA 3VY7A 1VBPA 1XEZA 1JI6A 4W8JA 2NUOA 1OUWA 3LL0A 5J4XA 2GUCA 3R50A 1C3MA 3MIVA 2QP2A 1UGXA 3LM1A 4AKDA 4ARYA 1M26A 1PXDA 3VY6A 4WOGA 2BMYA 1KU8A 2BN0A 3MITA 1TP8A 1X1VA 1ZGSA 1UGWA 1UGWC 1XXQA 1J4SA 2BMZA 5J50A 5J51A 1VMOA 2JZ4A 1UGYC 1UH1A 3WOBA 4AKCA 1C3KA 4PITA 4R6OA 2C9KA 3EB7A 3MIUA 1CIYA 1ZGRA 3APAA 1KUJA 3VZGA 2GUEA 4PIUA 2HYQA 4GX7A 1WS4A 1WS4C 1I5PA 4R6QA 3P8SA 2NU5A 3TOWA 4PIKA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3LL2 A;  3AQG A;  1C3N A;  1UGY A;  1UH0 A;  4AK4 A;  3R51 A;  1JOT A;  1TOQ A;  3LKY A;  1J4U A;  3O44 A;  1WS5 C;  3LLY A;  3R52 A;  4AKB A;  2HYR A;  3LL1 A;  5BN6 E;  4PIF A;  5J4T A;  4MQ0 A;  5AV7 A;  2GUD A;  1VBO A;  1J4T A;  1JAC A;  3WOC A;  4R6R A;  5JM1 A;  1XXR A;  4DDN A;  4R6N A;  5EXG A;  2GUX A;  3LLZ A;  2GTY A;  1WS5 A;  3VZE A;  3VZF A;  4R6P A;  3VY7 A;  1VBP A;  1XEZ A;  2NUO A;  1OUW A;  3LL0 A;  5J4X A;  2GUC A;  3R50 A;  1C3M A;  3MIV A;  1UGX A;  3LM1 A;  4AKD A;  1M26 A;  1PXD A;  3VY6 A;  4WOG A;  2BMY A;  1KU8 A;  2BN0 A;  3MIT A;  1TP8 A;  1X1V A;  1ZGS A;  1UGW A;  1UGW C;  1XXQ A;  1J4S A;  2BMZ A;  5J50 A;  5J51 A;  2JZ4 A;  1UGY C;  1UH1 A;  3WOB A;  4AKC A;  1C3K A;  4PIT A;  4R6O A;  3MIU A;  1ZGR A;  3APA A;  1KUJ A;  3VZG A;  2GUE A;  4PIU A;  2HYQ A;  4GX7 A;  1WS4 A;  1WS4 C;  4R6Q A;  3P8S A;  2NU5 A;  4PIK A; 
#chains in the Genus database with same CATH topology
 3LL2 A;  3AQG A;  1C3N A;  1W99 A;  1UGY A;  1UH0 A;  4AK4 A;  4MOA A;  3R51 A;  4QX2 A;  1JOT A;  1TOQ A;  3LKY A;  1J4U A;  3O44 A;  1WS5 C;  3LLY A;  3R52 A;  4AKB A;  2HYR A;  3LL1 A;  5BN6 E;  4PIF A;  5J4T A;  4MQ0 A;  5AV7 A;  2GUD A;  1VBO A;  4QX3 A;  1J4T A;  1JAC A;  3WOC A;  4R6R A;  4ARX A;  5JM1 A;  4QX1 A;  1XXR A;  4DDN A;  4R6N A;  5EXG A;  4D8M A;  2GUX A;  3LLZ A;  2GTY A;  1DLC A;  1WS5 A;  4QX0 A;  3VZE A;  3VZF A;  4R6P A;  3VY7 A;  1VBP A;  1XEZ A;  1JI6 A;  4W8J A;  2NUO A;  1OUW A;  3LL0 A;  5J4X A;  2GUC A;  3R50 A;  1C3M A;  3MIV A;  2QP2 A;  1UGX A;  3LM1 A;  4AKD A;  4ARY A;  1M26 A;  1PXD A;  3VY6 A;  4WOG A;  2BMY A;  1KU8 A;  2BN0 A;  3MIT A;  1TP8 A;  1X1V A;  1ZGS A;  1UGW A;  1UGW C;  1XXQ A;  1J4S A;  2BMZ A;  5J50 A;  5J51 A;  1VMO A;  2JZ4 A;  1UGY C;  1UH1 A;  3WOB A;  4AKC A;  1C3K A;  4PIT A;  4R6O A;  2C9K A;  3EB7 A;  3MIU A;  1CIY A;  1ZGR A;  3APA A;  1KUJ A;  3VZG A;  2GUE A;  4PIU A;  2HYQ A;  4GX7 A;  1WS4 A;  1WS4 C;  1I5P A;  4R6Q A;  3P8S A;  2NU5 A;  3TOW A;  4PIK A; 
#chains in the Genus database with same CATH homology
 3LL2 A;  3AQG A;  1C3N A;  1UGY A;  1UH0 A;  4AK4 A;  3R51 A;  1JOT A;  1TOQ A;  3LKY A;  1J4U A;  3O44 A;  1WS5 C;  3LLY A;  3R52 A;  4AKB A;  2HYR A;  3LL1 A;  5BN6 E;  4PIF A;  5J4T A;  4MQ0 A;  5AV7 A;  2GUD A;  1VBO A;  1J4T A;  1JAC A;  3WOC A;  4R6R A;  5JM1 A;  1XXR A;  4DDN A;  4R6N A;  5EXG A;  2GUX A;  3LLZ A;  2GTY A;  1WS5 A;  3VZE A;  3VZF A;  4R6P A;  3VY7 A;  1VBP A;  1XEZ A;  2NUO A;  1OUW A;  3LL0 A;  5J4X A;  2GUC A;  3R50 A;  1C3M A;  3MIV A;  1UGX A;  3LM1 A;  4AKD A;  1M26 A;  1PXD A;  3VY6 A;  4WOG A;  2BMY A;  1KU8 A;  2BN0 A;  3MIT A;  1TP8 A;  1X1V A;  1ZGS A;  1UGW A;  1UGW C;  1XXQ A;  1J4S A;  2BMZ A;  5J50 A;  5J51 A;  2JZ4 A;  1UGY C;  1UH1 A;  3WOB A;  4AKC A;  1C3K A;  4PIT A;  4R6O A;  3MIU A;  1ZGR A;  3APA A;  1KUJ A;  3VZG A;  2GUE A;  4PIU A;  2HYQ A;  4GX7 A;  1WS4 A;  1WS4 C;  4R6Q A;  3P8S A;  2NU5 A;  4PIK A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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4AKDA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations