The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
48
|
sequence length |
166
|
structure length |
166
|
Chain Sequence |
HGYVASPGSRAFFGSSAGGNLNTNVGRAQWEPQSIEAPKNTFITGKLASAGVSGFEPLDEQTATRWHKTNITTGPLDITWNLTAQHRTASWDYYITKNGWNPNQPLDIKNFDKIASIDGKQEVPNKVVKQTINIPTDRKGYHVIYAVWGIGDTVNAFYQAIDVNIQ
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule tags |
Chitin binding protein
|
| source organism |
Enterococcus faecalis
|
| publication title |
Structural and Electronic Snapshots During the Transition from a Cu(II) to Cu(I) Metal Center of a Lytic Polysaccharide Monooxygenase by X-Ray Photo-Reduction.
pubmed doi rcsb |
| molecule keywords |
CHITIN BINDING PROTEIN
|
| total genus |
48
|
| structure length |
166
|
| sequence length |
166
|
| ec nomenclature |
ec
1.14.99.53: Lytic chitin monooxygenase. |
| pdb deposition date | 2012-03-02 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF03067 | LPMO_10 | Lytic polysaccharide mono-oxygenase, cellulose-degrading |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Distorted Sandwich | Coagulation Factor XIII; Chain A, domain 1 | chitin-binding protein cbp21 |
#chains in the Genus database with same CATH superfamily 4ALS A; 5AA7 A; 4A02 A; 2YOX A; 2YOY A; 4ALT A; 4OY6 A; 2BEN A; 5IJU A; 4ALR A; 2YOW A; 5FTZ A; 4ALC A; 2BEM A; 4OY8 A; 5FJQ A; 3UAM A; 4GBO A; 2XWX A; 4OY7 A; 4ALE A; 2LHS A; 4ALQ A; #chains in the Genus database with same CATH topology 1FT3 A; 1QVY A; 4ALT A; 5HNP A; 5FOH A; 5IJU A; 4GOK C; 1HH4 D; 1KSJ B; 2JHY A; 5FTZ A; 3ZUD A; 4JV8 B; 1KSH B; 2JHS A; 4GOJ C; 1DS6 B; 2BXW A; 4JVB B; 4QI8 A; 4JV6 B; 4ALQ A; 1KSG B; 4ALS A; 3GQQ A; 2JHW A; 5E80 A; 5AA7 A; 2YOX A; 5HGU A; 3EJA A; 2YET A; 4D7U A; 2JHX A; 4LN0 A; 4B5Q A; 5TB5 B; 5HNO A; 5ACG A; 5DQ8 A; 4JHP B; 5TAR B; 5ACJ A; 2BEM A; 4OY8 A; 1KMT A; 3T5G B; 4EIS A; 3JUA A; 3EII A; 3L15 A; 4RE1 A; 4EIS B; 4FMR A; 5EMW A; 5E8F A; 5DQE A; 3RBQ A; 4OY6 A; 2BEN A; 2JHZ A; 3KYS A; 2YOW A; 5ACH A; 2JI0 A; 2JHV A; 5EMV A; 4ALC A; 4D7V A; 4JVF B; 2JHU A; 4GBO A; 5F2U A; 4ALE A; 2R5O A; 5L7K A; 2VTC A; 5ACI A; 1FST A; 1FT0 A; 4A02 A; 2YOY A; 4F38 B; 1RHO A; 4ALR A; 4EIR A; 1FSO A; 2JHT A; 3T5I A; 5FJQ A; 3UAM A; 5ACF A; 2XWX A; 4MAI A; 1DOA B; 1GDF A; 4MAH A; 4OY7 A; 2LHS A; 1AJW A; #chains in the Genus database with same CATH homology 4ALS A; 5AA7 A; 4A02 A; 2YOX A; 2YOY A; 4ALT A; 4OY6 A; 2BEN A; 5IJU A; 4ALR A; 2YOW A; 5FTZ A; 4ALC A; 2BEM A; 4OY8 A; 5FJQ A; 3UAM A; 4GBO A; 2XWX A; 4OY7 A; 4ALE A; 2LHS A; 4ALQ A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
